cluster # 2626

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Anopheles gambiae
cluster # 2626 cluster # 2626 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2626#0 length = 545 sequences # 1

consensus_2626#1 length = 302 sequences # 1

consensusID : consensus_2626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [AGTGTCCGAACTGTTCGACGAAACGCTGTCGAATCTTTCCTCGGCCGTCGTGGAGGAAGGTCACGAGACGGACGAGTTCTTTGATGCGGTTGGTGGGCAGAACAGGCATCACTATCACAGTCTGCTCGGGTCGGAGCAGTGTTACGACTTTACGCCACGCATCTTCCACCTGACCAGTATCAACAATGGCAACTTTGAGGCGACCGAGCTACAGTGTGCGCTGCGTGCGAAGGACCGCCCCACGGCGTACCCGTTCCGGCAGGAGGATCTTTACAGCGCCCATCAGCCAACGATCTTCCTGATCGATAATGGGCACGTGCTGTGGCTGTGGCACGGGCTGGTGGCCGACGGGCGACGAGTCGGGCAGCGACAGTGGCGCCGGCGGCGAGACGAACCACAGCAGCTTCGACAGCAACCGGTCGGGCGAGAACCGGTGGCAGGTGGAGCCGGCGGGTCGCAATGGAGACGGCCGTCTCGTACTGGAAGGCGAAACAGCGGCAGGCAGGTGTGGGCGAACGCGTGACGAATGGCAATGGGCATGCGAT]

[+] EMBL AL934613             [AGTGTCCGAACTGTTCGACGAAACGCTGTCGAATCTTTCCTCGGCCGTCGTGGAGGAAGGTCACGAGACGGACGAGTTCTTTGATGCGGTTGGTGGGCAGAACAGGCATCACTATCACAGTCTGCTCGGGTCGGAGCAGTGTTACGACTTTACGCCACGCATCTTCCACCTGACCAGTATCAACAATGGCAACTTTGAGGCGACCGAGCTACAGTGTGCGCTGCGTGCGAAGGACCGCCCCACGGCGTACCCGTTCCGGCAGGAGGATCTTTACAGCGCCCATCAGCCAACGATCTTCCTGATCGATAATGGGCACGTGCTGTGGCTGTGGCACGGGCTGGTGGCCGACGGGCGACGAGTCGGGCAGCGACAGTGGCGCCGGCGGCGAGACGAACCACAGCAGCTTCGACAGCAACCGGTCGGGCGAGAACCGGTGGCAGGTGGAGCCGGCGGGTCGCAATGGAGACGGCCGTCTCGTACTGGAAGGCGAAACAGCGGCAGGCAGGTGTGGGCGAACGCGTGACGAATGGCAATGGGCATGCGAT]




>consensus_2626#0
AGTGTCCGAACTGTTCGACGAAACGCTGTCGAATCTTTCCTCGGCCGTCGTGGAGGAAGG
TCACGAGACGGACGAGTTCTTTGATGCGGTTGGTGGGCAGAACAGGCATCACTATCACAG
TCTGCTCGGGTCGGAGCAGTGTTACGACTTTACGCCACGCATCTTCCACCTGACCAGTAT
CAACAATGGCAACTTTGAGGCGACCGAGCTACAGTGTGCGCTGCGTGCGAAGGACCGCCC
CACGGCGTACCCGTTCCGGCAGGAGGATCTTTACAGCGCCCATCAGCCAACGATCTTCCT
GATCGATAATGGGCACGTGCTGTGGCTGTGGCACGGGCTGGTGGCCGACGGGCGACGAGT
CGGGCAGCGACAGTGGCGCCGGCGGCGAGACGAACCACAGCAGCTTCGACAGCAACCGGT
CGGGCGAGAACCGGTGGCAGGTGGAGCCGGCGGGTCGCAATGGAGACGGCCGTCTCGTAC
TGGAAGGCGAAACAGCGGCAGGCAGGTGTGGGCGAACGCGTGACGAATGGCAATGGGCAT
GCGAT

consensusID : consensus_2626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence

                              [TCGGCCACGAGGNTGGATGGCAGGTGGAGCGGCGGGTCCGCAATGGAGACGGCCGTCTCGTACTGGAAGGCGAAACAGCGGCAGGCAGGTGTGGGCGAACGCGTGACGAATGGCAATGGGCATGCGATTGCTACTACGGCGACGACACGACNGCGGATGAGAATGGAAACGATGAGCAGGGGTGTGGATGAGGTCGATGCCAAGACGACGACGGACCGGCAGCAGGAGCATCACCGTGTGGAGACCACCGGCGACCGACTGCTGCTCCGGATGACCACGTGCATGGGTTCGTCAGGATCTGG]

[+] EMBL BX469495             [TCGGCCACGAGGNTGGATGGCAGGTGGAGCGGCGGGTCCGCAATGGAGACGGCCGTCTCGTACTGGAAGGCGAAACAGCGGCAGGCAGGTGTGGGCGAACGCGTGACGAATGGCAATGGGCATGCGATTGCTACTACGGCGACGACACGACNGCGGATGAGAATGGAAACGATGAGCAGGGGTGTGGATGAGGTCGATGCCAAGACGACGACGGACCGGCAGCAGGAGCATCACCGTGTGGAGACCACCGGCGACCGACTGCTGCTCCGGATGACCACGTGCATGGGTTCGTCAGGATCTGG]




>consensus_2626#1
TCGGCCACGAGGNTGGATGGCAGGTGGAGCGGCGGGTCCGCAATGGAGACGGCCGTCTCG
TACTGGAAGGCGAAACAGCGGCAGGCAGGTGTGGGCGAACGCGTGACGAATGGCAATGGG
CATGCGATTGCTACTACGGCGACGACACGACNGCGGATGAGAATGGAAACGATGAGCAGG
GGTGTGGATGAGGTCGATGCCAAGACGACGACGGACCGGCAGCAGGAGCATCACCGTGTG
GAGACCACCGGCGACCGACTGCTGCTCCGGATGACCACGTGCATGGGTTCGTCAGGATCT
GG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2626#0      AGTGTCCGAACTGTTCGACGAAACGCTGTCGAATCTTTCCTCGGCCGTCGTGGAGGAAGG 60
consensus_2626#1      ------------------------------------------------------------
                                                                                  

consensus_2626#0      TCACGAGACGGACGAGTTCTTTGATGCGGTTGGTGGGCAGAACAGGCATCACTATCACAG 120
consensus_2626#1      ------------------------------------------------------------
                                                                                  

consensus_2626#0      TCTGCTCGGGTCGGAGCAGTGTTACGACTTTACGCCACGCATCTTCCACCTGACCAGTAT 180
consensus_2626#1      -------------------------------------------------TCGGCCACGAG 11
                                                                         * ***  * 

consensus_2626#0      CAACAATGGCAACTTTGAGGCGACCGAGCTACAGTGTGCGCTGCGTGCGAAGGACCGCCC 240
consensus_2626#1      GNTGGATGGCAGG--TGGAGCGGCGGGTCCGCAATGGAGACGGC-CGTCTCGTACTGG-- 66
                           ******    **  *** * *  *  ** **    * **  *    * ** *   

consensus_2626#0      CACGGCGTACCCGTTCCGGCAGGAGGATCTTTAC-AGCGCCCATCAGCCAACGATCTTCC 299
consensus_2626#1      -AAGGCGAAACAG---CGGCAGGCAGGTGTGGGCGAACGCGTGACGAATGGCAATGGGCA 122
                       * **** * * *   *******  * * *   * * ***    *      * **   * 

consensus_2626#0      TGATCGATAATGGGCACGTGCTGTGGCTGTGGCACGGGCTGGTGGCCGACGGGCGACGAG 359
consensus_2626#1      TG--CGATTGCTACTACG-GCGACGAC-ACGACNGCGGATGAGAATGGA--AACGATGAG 176
                      **  ****       *** **   * *   * *   ** **      **    *** ***

consensus_2626#0      TCGGGCAGCGACAGTGGCGCCGGCGGCGAGACGA-ACCACAGCAGCTTCGACAGCAAC-C 417
consensus_2626#1      CAGGGGTGTG--GATGAGGTCGATGCCAAGACGACGACGGACCGGCAGCAGGAGCATCAC 234
                        ***  * *    **  * **  * * ******   *  * * **  *   **** * *

consensus_2626#0      GGTCGGGCGAGAACCGGTGGCAGGTGGAGCCGGCGGGTCGCAATGGAGACGG--CCGTCT 475
consensus_2626#1      CGTGTGGAGACCACCGGCGACCGACTGCTGCTCCGGATGACCACGTGCATGGGTTCGTCA 294
                       **  ** **  ***** * * *   *   *  *** *  * * *   * **   **** 

consensus_2626#0      CGTACTGGAAGGCGAAACAGCGGCAGGCAGGTGTGGGCGAACGCGTGACGAATGGCAATG 535
consensus_2626#1      GGATCTGG---------------------------------------------------- 302
                       *  ****                                                    

consensus_2626#0      GGCATGCGAT 545
consensus_2626#1      ----------