These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [GCAAGAATCCCCCCAGTTATCCGGCATCGCNGGCCAATCGCTCCAAGGAGATTATACGCGCNCGGGGGAGCGAAAAATTTCCGGCATCATGAATGACGGCATNAACTCGCTAATCGCTACTATCTGGCCCGGTTTAAGTGACACGTACCGGCAGTGCCACGATCGATATGATGCTCGGCAACAACGTGTTCTGCCCGAGTCGGTGTCGGGCTCGGCTGGCACCCAGACCGCGCCACGGACGAGACGGACGCGCTGGAGTGGTGCGGAGCATGCTGCGCCTGCTGGTCGAGGACTGCCGNNGGCTGCTGCTCGGCACGGGCCAGCTTCCGGTCGGTGCCTGGGGTCTCATCGATGCCGATCCAAGGTAAGGGCGCCACACAACAACAAACAAACACCAAAAATGCCTTTCATGCGATGCCTTATTTGTTGTGTGCTTAGAAGGCCTGTATGTGTGTGTGTAGTAGTAGTTGTAGGTAGCTGCGGTAGTTGCTAAAACAGNTAAACAATAATCGAACCACTTTTTGCGGCAACCAANAACCAAAAACCCAAACAAGGCGTATTGCGTTGTAAAT] [+] EMBL AL933299 [GCAAGAATCCCCCCAGTTATCCGGCATCGCNGGCCAATCGCTCCAAGGAGATTATACGCGCNCGGGGGAGCGAAAAATTTCCGGCATCATGAATGACGGCATNAACTCGCTAATCGCTACTATCTGGCCCGGTTTAAGTGACACGTACCGGCAGTGCCACGATCGATATGATGCTCGGCAACAACGTGTTCTGCCCGAGTCGGTGTCGGGCTCGGCTGGCACCCAGACCGCGCCACGGACGAGACGGACGCGCTGGAGTGGTGCGGAGCATGCTGCGCCTGCTGGTCGAGGACTGCCGNNGGCTGCTGCTCGGCACGGGCCAGCTTCCGGTCGGTGCCTGGGGTCTCATCGATGCCGATCCAAGGTAAGGGCGCCACACAACAACAAACAAACACCAAAAATGCCTTTCATGCGATGCCTTATTTGTTGTGTGCTTAGAAGGCCTGTATGTGTGTGTGTAGTAGTAGTTGTAGGTAGCTGCGGTAGTTGCTAAAACAGNTAAACAATAATCGAACCACTTTTTGCGGCAACCAANAACCAAAAACCCAAACAAGGCGTATTGCGTTGTAAAT] consensusID : consensus_2647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CCGGTTTCCACTGGCGCGACACGAACGGCCCGATCTGCAACCAGAAGGGCGTGTTCCGCGTCAACTGCATGGACTGTCTCGACCGCACGAACGTGGTGCAGACGGCCATCGGCAAGGCGGTGCTCGAGTCGCAGCTCGTCAAGCTCGGTCTCGCCATGCCGTACTCGCAGCTGCCGGACGCGCTCAAGGCCCCGTTCATGGTGCTGTGGGCGAACAACGGCGACGTCATCAGCCGGCAGTACGCGGGCACGAATGCGCTCAAGGGAGATTATACGCGCACGGGGGAGCGAAAAATTTCCGGCATCATGAAGGACGGCATGAACTCGGCTAATCGCTACTATCTGGCCCGGTTTAAGGACACGTACCGGCAGGCCACGATCGATATGATGCTCGGCAACAACGTGTCGCCCGAGTCGGTGTCGGCGCTCGGCGGCACCCAGACCGCCGCCACGGACGAGACGGACGCGCTGGAGGGTGCGGAGCATGCGCGCCTGCTGGTCGAGGACTGCCGGCGGCTGCTACTCGGCACGGCCCAGCTTC] [+] EMBL BM628955 [CCGGTTTCCACTGGCGCGACACGAACGGCCCGATCTGCAACCAGAAGGGCGTGTTCCGCGTCAACTGCATGGACTGTCTCGACCGCACGAACGTGGTGCAGACGGCCATCGGCAAGGCGGTGCTCGAGTCGCAGCTCGTCAAGCTCGGTCTCGCCATGCCGTACTCGCAGCTGCCGGACGCGCTCAAGGCCCCGTTCATGGTGCTGTGGGCGAACAACGGCGACGTCATCAGCCGGCAGTACGCGGGCACGAATGCGCTCAAGGGAGATTATACGCGCACGGGGGAGCGAAAAATTTCCGGCATCATGAAGGACGGCATGAACTCGGCTAATCGCTACTATCTGGCCCGGTTTAAGGACACGTACCGGCAGGCCACGATCGATATGATGCTCGGCAACAACGTGTCGCCCGAGTCGGTGTCGGCGCTCGGCGGCACCCAGACCGCCGCCACGGACGAGACGGACGCGCTGGAGGGTGCGGAGCATGCGCGCCTGCTGGTCGAGGACTGCCGGCGGCTGCTACTCGGCACGGCCCAGCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2647#0 ------------------------------------------------------------ consensus_2647#1 CCGGTTTCCACTGGCGCGACACGAACGGCCCGATCTGCAACCAGAAGGGCGTGTTCCGCG 60 consensus_2647#0 ------------------------------------------------------------ consensus_2647#1 TCAACTGCATGGACTGTCTCGACCGCACGAACGTGGTGCAGACGGCCATCGGCAAGGCGG 120 consensus_2647#0 ------------------------------------------------------------ consensus_2647#1 TGCTCGAGTCGCAGCTCGTCAAGCTCGGTCTCGCCATGCCGTACTCGCAGCTGCCGGACG 180 consensus_2647#0 ---------------------------------GCAAGAATCCCCCCAGTTATCCGGCAT 27 consensus_2647#1 CGCTCAAGGCCCCGTTCATGGTGCTGTGGGCGAACAACGGCGACGTCA-TCAGCCGGCAG 239 *** * ** * * ****** consensus_2647#0 --CGCNGGCC--AAT-CGCTCCAAGGAGATTATACGCGCNCGGGGGAGCGAAAAATTTCC 82 consensus_2647#1 TACGCGGGCACGAATGCGCTCAAGGGAGATTATACGCGCACGGGGGAGCGAAAAATTTCC 299 *** *** *** ***** * *************** ******************** consensus_2647#0 GGCATCATGAATGACGGCATNAACTCG-CTAATCGCTACTATCTGGCCCGGTTTAAGTGA 141 consensus_2647#1 GGCATCATGAAGGACGGCATGAACTCGGCTAATCGCTACTATCTGGCCCGGTTTAAG-GA 358 *********** ******** ****** ***************************** ** consensus_2647#0 CACGTACCGGCAGTGCCACGATCGATATGATGCTCGGCAACAACGTGTTCTGCCCGAGTC 201 consensus_2647#1 CACGTACCGGCAG-GCCACGATCGATATGATGCTCGGCAACAACGTGT--CGCCCGAGTC 415 ************* ********************************** ********* consensus_2647#0 GGTGTCGG-GCTCGGCTGGCACCCAGACCGC-GCCACGGACGAGACGGACGCGCTGGAGT 259 consensus_2647#1 GGTGTCGGCGCTCGGC-GGCACCCAGACCGCCGCCACGGACGAGACGGACGCGCTGGAG- 473 ******** ******* ************** *************************** consensus_2647#0 GGTGCGGAGCATGCTGCGCCTGCTGGTCGAGGACTGCCGNNGGCTGCTGCTCGGCACGGG 319 consensus_2647#1 GGTGCGGAGCATGC-GCGCCTGCTGGTCGAGGACTGCCGGCGGCTGCTACTCGGCACGGC 532 ************** ************************ ******* ********** consensus_2647#0 CCAGCTTCCGGTCGGTGCCTGGGGTCTCATCGATGCCGATCCAAGGTAAGGGCGCCACAC 379 consensus_2647#1 CCAGCTTC---------------------------------------------------- 540 ******** consensus_2647#0 AACAACAAACAAACACCAAAAATGCCTTTCATGCGATGCCTTATTTGTTGTGTGCTTAGA 439 consensus_2647#1 ------------------------------------------------------------ consensus_2647#0 AGGCCTGTATGTGTGTGTGTAGTAGTAGTTGTAGGTAGCTGCGGTAGTTGCTAAAACAGN 499 consensus_2647#1 ------------------------------------------------------------ consensus_2647#0 TAAACAATAATCGAACCACTTTTTGCGGCAACCAANAACCAAAAACCCAAACAAGGCGTA 559 consensus_2647#1 ------------------------------------------------------------ consensus_2647#0 TTGCGTTGTAAAT 572 consensus_2647#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||