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Anopheles gambiae
cluster # 2647 cluster # 2647       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2647#0 length = 572 sequences # 1  
consensus_2647#1 length = 540 sequences # 1  

consensusID : consensus_2647#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence
                              [GCAAGAATCCCCCCAGTTATCCGGCATCGCNGGCCAATCGCTCCAAGGAGATTATACGCGCNCGGGGGAGCGAAAAATTTCCGGCATCATGAATGACGGCATNAACTCGCTAATCGCTACTATCTGGCCCGGTTTAAGTGACACGTACCGGCAGTGCCACGATCGATATGATGCTCGGCAACAACGTGTTCTGCCCGAGTCGGTGTCGGGCTCGGCTGGCACCCAGACCGCGCCACGGACGAGACGGACGCGCTGGAGTGGTGCGGAGCATGCTGCGCCTGCTGGTCGAGGACTGCCGNNGGCTGCTGCTCGGCACGGGCCAGCTTCCGGTCGGTGCCTGGGGTCTCATCGATGCCGATCCAAGGTAAGGGCGCCACACAACAACAAACAAACACCAAAAATGCCTTTCATGCGATGCCTTATTTGTTGTGTGCTTAGAAGGCCTGTATGTGTGTGTGTAGTAGTAGTTGTAGGTAGCTGCGGTAGTTGCTAAAACAGNTAAACAATAATCGAACCACTTTTTGCGGCAACCAANAACCAAAAACCCAAACAAGGCGTATTGCGTTGTAAAT]

[+] EMBL AL933299             [GCAAGAATCCCCCCAGTTATCCGGCATCGCNGGCCAATCGCTCCAAGGAGATTATACGCGCNCGGGGGAGCGAAAAATTTCCGGCATCATGAATGACGGCATNAACTCGCTAATCGCTACTATCTGGCCCGGTTTAAGTGACACGTACCGGCAGTGCCACGATCGATATGATGCTCGGCAACAACGTGTTCTGCCCGAGTCGGTGTCGGGCTCGGCTGGCACCCAGACCGCGCCACGGACGAGACGGACGCGCTGGAGTGGTGCGGAGCATGCTGCGCCTGCTGGTCGAGGACTGCCGNNGGCTGCTGCTCGGCACGGGCCAGCTTCCGGTCGGTGCCTGGGGTCTCATCGATGCCGATCCAAGGTAAGGGCGCCACACAACAACAAACAAACACCAAAAATGCCTTTCATGCGATGCCTTATTTGTTGTGTGCTTAGAAGGCCTGTATGTGTGTGTGTAGTAGTAGTTGTAGGTAGCTGCGGTAGTTGCTAAAACAGNTAAACAATAATCGAACCACTTTTTGCGGCAACCAANAACCAAAAACCCAAACAAGGCGTATTGCGTTGTAAAT]


>consensus_2647#0 GCAAGAATCCCCCCAGTTATCCGGCATCGCNGGCCAATCGCTCCAAGGAGATTATACGCG CNCGGGGGAGCGAAAAATTTCCGGCATCATGAATGACGGCATNAACTCGCTAATCGCTAC TATCTGGCCCGGTTTAAGTGACACGTACCGGCAGTGCCACGATCGATATGATGCTCGGCA ACAACGTGTTCTGCCCGAGTCGGTGTCGGGCTCGGCTGGCACCCAGACCGCGCCACGGAC GAGACGGACGCGCTGGAGTGGTGCGGAGCATGCTGCGCCTGCTGGTCGAGGACTGCCGNN GGCTGCTGCTCGGCACGGGCCAGCTTCCGGTCGGTGCCTGGGGTCTCATCGATGCCGATC CAAGGTAAGGGCGCCACACAACAACAAACAAACACCAAAAATGCCTTTCATGCGATGCCT TATTTGTTGTGTGCTTAGAAGGCCTGTATGTGTGTGTGTAGTAGTAGTTGTAGGTAGCTG CGGTAGTTGCTAAAACAGNTAAACAATAATCGAACCACTTTTTGCGGCAACCAANAACCA AAAACCCAAACAAGGCGTATTGCGTTGTAAAT



consensusID : consensus_2647#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence
                              [CCGGTTTCCACTGGCGCGACACGAACGGCCCGATCTGCAACCAGAAGGGCGTGTTCCGCGTCAACTGCATGGACTGTCTCGACCGCACGAACGTGGTGCAGACGGCCATCGGCAAGGCGGTGCTCGAGTCGCAGCTCGTCAAGCTCGGTCTCGCCATGCCGTACTCGCAGCTGCCGGACGCGCTCAAGGCCCCGTTCATGGTGCTGTGGGCGAACAACGGCGACGTCATCAGCCGGCAGTACGCGGGCACGAATGCGCTCAAGGGAGATTATACGCGCACGGGGGAGCGAAAAATTTCCGGCATCATGAAGGACGGCATGAACTCGGCTAATCGCTACTATCTGGCCCGGTTTAAGGACACGTACCGGCAGGCCACGATCGATATGATGCTCGGCAACAACGTGTCGCCCGAGTCGGTGTCGGCGCTCGGCGGCACCCAGACCGCCGCCACGGACGAGACGGACGCGCTGGAGGGTGCGGAGCATGCGCGCCTGCTGGTCGAGGACTGCCGGCGGCTGCTACTCGGCACGGCCCAGCTTC]

[+] EMBL BM628955             [CCGGTTTCCACTGGCGCGACACGAACGGCCCGATCTGCAACCAGAAGGGCGTGTTCCGCGTCAACTGCATGGACTGTCTCGACCGCACGAACGTGGTGCAGACGGCCATCGGCAAGGCGGTGCTCGAGTCGCAGCTCGTCAAGCTCGGTCTCGCCATGCCGTACTCGCAGCTGCCGGACGCGCTCAAGGCCCCGTTCATGGTGCTGTGGGCGAACAACGGCGACGTCATCAGCCGGCAGTACGCGGGCACGAATGCGCTCAAGGGAGATTATACGCGCACGGGGGAGCGAAAAATTTCCGGCATCATGAAGGACGGCATGAACTCGGCTAATCGCTACTATCTGGCCCGGTTTAAGGACACGTACCGGCAGGCCACGATCGATATGATGCTCGGCAACAACGTGTCGCCCGAGTCGGTGTCGGCGCTCGGCGGCACCCAGACCGCCGCCACGGACGAGACGGACGCGCTGGAGGGTGCGGAGCATGCGCGCCTGCTGGTCGAGGACTGCCGGCGGCTGCTACTCGGCACGGCCCAGCTTC]


>consensus_2647#1 CCGGTTTCCACTGGCGCGACACGAACGGCCCGATCTGCAACCAGAAGGGCGTGTTCCGCG TCAACTGCATGGACTGTCTCGACCGCACGAACGTGGTGCAGACGGCCATCGGCAAGGCGG TGCTCGAGTCGCAGCTCGTCAAGCTCGGTCTCGCCATGCCGTACTCGCAGCTGCCGGACG CGCTCAAGGCCCCGTTCATGGTGCTGTGGGCGAACAACGGCGACGTCATCAGCCGGCAGT ACGCGGGCACGAATGCGCTCAAGGGAGATTATACGCGCACGGGGGAGCGAAAAATTTCCG GCATCATGAAGGACGGCATGAACTCGGCTAATCGCTACTATCTGGCCCGGTTTAAGGACA CGTACCGGCAGGCCACGATCGATATGATGCTCGGCAACAACGTGTCGCCCGAGTCGGTGT CGGCGCTCGGCGGCACCCAGACCGCCGCCACGGACGAGACGGACGCGCTGGAGGGTGCGG AGCATGCGCGCCTGCTGGTCGAGGACTGCCGGCGGCTGCTACTCGGCACGGCCCAGCTTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2647#0      ------------------------------------------------------------
consensus_2647#1      CCGGTTTCCACTGGCGCGACACGAACGGCCCGATCTGCAACCAGAAGGGCGTGTTCCGCG 60
                                                                                  

consensus_2647#0      ------------------------------------------------------------
consensus_2647#1      TCAACTGCATGGACTGTCTCGACCGCACGAACGTGGTGCAGACGGCCATCGGCAAGGCGG 120
                                                                                  

consensus_2647#0      ------------------------------------------------------------
consensus_2647#1      TGCTCGAGTCGCAGCTCGTCAAGCTCGGTCTCGCCATGCCGTACTCGCAGCTGCCGGACG 180
                                                                                  

consensus_2647#0      ---------------------------------GCAAGAATCCCCCCAGTTATCCGGCAT 27
consensus_2647#1      CGCTCAAGGCCCCGTTCATGGTGCTGTGGGCGAACAACGGCGACGTCA-TCAGCCGGCAG 239
                                                        ***      *  ** * * ****** 

consensus_2647#0      --CGCNGGCC--AAT-CGCTCCAAGGAGATTATACGCGCNCGGGGGAGCGAAAAATTTCC 82
consensus_2647#1      TACGCGGGCACGAATGCGCTCAAGGGAGATTATACGCGCACGGGGGAGCGAAAAATTTCC 299
                        *** ***   *** ***** * *************** ********************

consensus_2647#0      GGCATCATGAATGACGGCATNAACTCG-CTAATCGCTACTATCTGGCCCGGTTTAAGTGA 141
consensus_2647#1      GGCATCATGAAGGACGGCATGAACTCGGCTAATCGCTACTATCTGGCCCGGTTTAAG-GA 358
                      *********** ******** ****** ***************************** **

consensus_2647#0      CACGTACCGGCAGTGCCACGATCGATATGATGCTCGGCAACAACGTGTTCTGCCCGAGTC 201
consensus_2647#1      CACGTACCGGCAG-GCCACGATCGATATGATGCTCGGCAACAACGTGT--CGCCCGAGTC 415
                      ************* **********************************   *********

consensus_2647#0      GGTGTCGG-GCTCGGCTGGCACCCAGACCGC-GCCACGGACGAGACGGACGCGCTGGAGT 259
consensus_2647#1      GGTGTCGGCGCTCGGC-GGCACCCAGACCGCCGCCACGGACGAGACGGACGCGCTGGAG- 473
                      ******** ******* ************** *************************** 

consensus_2647#0      GGTGCGGAGCATGCTGCGCCTGCTGGTCGAGGACTGCCGNNGGCTGCTGCTCGGCACGGG 319
consensus_2647#1      GGTGCGGAGCATGC-GCGCCTGCTGGTCGAGGACTGCCGGCGGCTGCTACTCGGCACGGC 532
                      ************** ************************  ******* ********** 

consensus_2647#0      CCAGCTTCCGGTCGGTGCCTGGGGTCTCATCGATGCCGATCCAAGGTAAGGGCGCCACAC 379
consensus_2647#1      CCAGCTTC---------------------------------------------------- 540
                      ********                                                    

consensus_2647#0      AACAACAAACAAACACCAAAAATGCCTTTCATGCGATGCCTTATTTGTTGTGTGCTTAGA 439
consensus_2647#1      ------------------------------------------------------------
                                                                                  

consensus_2647#0      AGGCCTGTATGTGTGTGTGTAGTAGTAGTTGTAGGTAGCTGCGGTAGTTGCTAAAACAGN 499
consensus_2647#1      ------------------------------------------------------------
                                                                                  

consensus_2647#0      TAAACAATAATCGAACCACTTTTTGCGGCAACCAANAACCAAAAACCCAAACAAGGCGTA 559
consensus_2647#1      ------------------------------------------------------------
                                                                                  

consensus_2647#0      TTGCGTTGTAAAT 572
consensus_2647#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)