cluster # 2660

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Anopheles gambiae
cluster # 2660 cluster # 2660 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2660#0 length = 795 sequences # 1

consensus_2660#1 length = 376 sequences # 1

consensusID : consensus_2660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 795
fasta sequence

                              [TTTTATAAATCAAACTCTGTTTTACACATTTCGCACATACTCTTACTAGCCATTATGTACAATCCCCTGTTGCATACAATGCTTTTGCGCGTGTACAAAAATATATCAGTCGTATTTGTTACCCTATTTATACATCATCGTTTCCTACAACTCTTCCCTGTGCACAACAACATTTCACGCACTAACTAATGAATGTTACTGGACCCGCTGCTACTGCTCTACCCTCTTTTCAACGGCCTGTTTTTTTTAGATAGGTTTCTTTTTGCTATGGTTATTTCTTTTTGCTATGTTTGGTAGCGTACCCCGGTGCTGTAAAGGAACAGGAAAAACAACGGACGTTACTGATACCTGTGTGCTTTGCATGTTGCTGAATGTGTATGTCCTTGTTTGTTCGTGTATTTTATTGAACTACTTTAAACGTAACAAACTTGACGAATAATGTTTTCTGTTGTTCGCAATTGTAATGCTCCCGGGTGCTGTTTTAAATCGGAAAAGTAAATGGTACAGCAAACCAAAATTCATGGATCGCAAAAACGGACCCCATATGGTGCAACTGTAATTCTACTCCTATAATGCTCTCTCTGCATAGACTTCCCCCCCAGTCGTCGTTGCTTTTGTTTGCCTATTTTGCTTATTCCCAAAACTAACGCGCGCGTGCACTGACGAGTTCCTTGCCACTCCTTCACAAACATTCCCATCTTAGGTCACTAGGTGTGGTAAGTTATTAGTGCAATGTGCAAATTGTTTCATGGTTAAATAGCTCTTTCTCCAGTGGGCCAACAGTGCTCGAGGACC]

[+] EMBL CNS08QOO             [TTTTATAAATCAAACTCTGTTTTACACATTTCGCACATACTCTTACTAGCCATTATGTACAATCCCCTGTTGCATACAATGCTTTTGCGCGTGTACAAAAATATATCAGTCGTATTTGTTACCCTATTTATACATCATCGTTTCCTACAACTCTTCCCTGTGCACAACAACATTTCACGCACTAACTAATGAATGTTACTGGACCCGCTGCTACTGCTCTACCCTCTTTTCAACGGCCTGTTTTTTTTAGATAGGTTTCTTTTTGCTATGGTTATTTCTTTTTGCTATGTTTGGTAGCGTACCCCGGTGCTGTAAAGGAACAGGAAAAACAACGGACGTTACTGATACCTGTGTGCTTTGCATGTTGCTGAATGTGTATGTCCTTGTTTGTTCGTGTATTTTATTGAACTACTTTAAACGTAACAAACTTGACGAATAATGTTTTCTGTTGTTCGCAATTGTAATGCTCCCGGGTGCTGTTTTAAATCGGAAAAGTAAATGGTACAGCAAACCAAAATTCATGGATCGCAAAAACGGACCCCATATGGTGCAACTGTAATTCTACTCCTATAATGCTCTCTCTGCATAGACTTCCCCCCCAGTCGTCGTTGCTTTTGTTTGCCTATTTTGCTTATTCCCAAAACTAACGCGCGCGTGCACTGACGAGTTCCTTGCCACTCCTTCACAAACATTCCCATCTTAGGTCACTAGGTGTGGTAAGTTATTAGTGCAATGTGCAAATTGTTTCATGGTTAAATAGCTCTTTCTCCAGTGGGCCAACAGTGCTCGAGGACC]




>consensus_2660#0
TTTTATAAATCAAACTCTGTTTTACACATTTCGCACATACTCTTACTAGCCATTATGTAC
AATCCCCTGTTGCATACAATGCTTTTGCGCGTGTACAAAAATATATCAGTCGTATTTGTT
ACCCTATTTATACATCATCGTTTCCTACAACTCTTCCCTGTGCACAACAACATTTCACGC
ACTAACTAATGAATGTTACTGGACCCGCTGCTACTGCTCTACCCTCTTTTCAACGGCCTG
TTTTTTTTAGATAGGTTTCTTTTTGCTATGGTTATTTCTTTTTGCTATGTTTGGTAGCGT
ACCCCGGTGCTGTAAAGGAACAGGAAAAACAACGGACGTTACTGATACCTGTGTGCTTTG
CATGTTGCTGAATGTGTATGTCCTTGTTTGTTCGTGTATTTTATTGAACTACTTTAAACG
TAACAAACTTGACGAATAATGTTTTCTGTTGTTCGCAATTGTAATGCTCCCGGGTGCTGT
TTTAAATCGGAAAAGTAAATGGTACAGCAAACCAAAATTCATGGATCGCAAAAACGGACC
CCATATGGTGCAACTGTAATTCTACTCCTATAATGCTCTCTCTGCATAGACTTCCCCCCC
AGTCGTCGTTGCTTTTGTTTGCCTATTTTGCTTATTCCCAAAACTAACGCGCGCGTGCAC
TGACGAGTTCCTTGCCACTCCTTCACAAACATTCCCATCTTAGGTCACTAGGTGTGGTAA
GTTATTAGTGCAATGTGCAAATTGTTTCATGGTTAAATAGCTCTTTCTCCAGTGGGCCAA
CAGTGCTCGAGGACC

consensusID : consensus_2660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [CATTAAATAACATGAACATGATCGGTCCATTGTTTTGTTTTACTCAGTGGCGCTTTTATAAATCAAACTCTGTTTTACACATTTCGCACATACTCTTACTAGCCATTATTTACAATCCCCTGTTGCATACAATGCTTTTGCGCGTGTACAAAAATATATCAGTCGTATTTGTTACCCTATTTATACATCATTGTTTCCTACAACTCTTCCCTGTGCACAACAACATTTCACGCAGTTCACTAACTAATGAATGTTACTGGACCCGCTGCTACTGCTCTACCTCCCTCTTTTCAACGGCCTGTTTTTTTGAGATAGGTTTCTTTTTGCTATGTTTTTTTTTTTGGTAGCGCCCACGCGTCCGCCCACGCGTCCGCGG]

[-] EMBL BM654419             [CATTAAATAACATGAACATGATCGGTCCATTGTTTTGTTTTACTCAGTGGCGCTTTTATAAATCAAACTCTGTTTTACACATTTCGCACATACTCTTACTAGCCATTATTTACAATCCCCTGTTGCATACAATGCTTTTGCGCGTGTACAAAAATATATCAGTCGTATTTGTTACCCTATTTATACATCATTGTTTCCTACAACTCTTCCCTGTGCACAACAACATTTCACGCAGTTCACTAACTAATGAATGTTACTGGACCCGCTGCTACTGCTCTACCTCCCTCTTTTCAACGGCCTGTTTTTTTGAGATAGGTTTCTTTTTGCTATGTTTTTTTTTTTGGTAGCGCCCACGCGTCCGCCCACGCGTCCGCGG]




>consensus_2660#1
CATTAAATAACATGAACATGATCGGTCCATTGTTTTGTTTTACTCAGTGGCGCTTTTATA
AATCAAACTCTGTTTTACACATTTCGCACATACTCTTACTAGCCATTATTTACAATCCCC
TGTTGCATACAATGCTTTTGCGCGTGTACAAAAATATATCAGTCGTATTTGTTACCCTAT
TTATACATCATTGTTTCCTACAACTCTTCCCTGTGCACAACAACATTTCACGCAGTTCAC
TAACTAATGAATGTTACTGGACCCGCTGCTACTGCTCTACCTCCCTCTTTTCAACGGCCT
GTTTTTTTGAGATAGGTTTCTTTTTGCTATGTTTTTTTTTTTGGTAGCGCCCACGCGTCC
GCCCACGCGTCCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2660#0      -----------------------------------------------------TTTTATA 7
consensus_2660#1      CATTAAATAACATGAACATGATCGGTCCATTGTTTTGTTTTACTCAGTGGCGCTTTTATA 60
                                                                           *******

consensus_2660#0      AATCAAACTCTGTTTTACACATTTCGCACATACTCTTACTAGCCATTATGTACAATCCCC 67
consensus_2660#1      AATCAAACTCTGTTTTACACATTTCGCACATACTCTTACTAGCCATTATTTACAATCCCC 120
                      ************************************************* **********

consensus_2660#0      TGTTGCATACAATGCTTTTGCGCGTGTACAAAAATATATCAGTCGTATTTGTTACCCTAT 127
consensus_2660#1      TGTTGCATACAATGCTTTTGCGCGTGTACAAAAATATATCAGTCGTATTTGTTACCCTAT 180
                      ************************************************************

consensus_2660#0      TTATACATCATCGTTTCCTACAACTCTTCCCTGTGCACAACAACATTTCACGCA-----C 182
consensus_2660#1      TTATACATCATTGTTTCCTACAACTCTTCCCTGTGCACAACAACATTTCACGCAGTTCAC 240
                      *********** ******************************************     *

consensus_2660#0      TAACTAATGAATGTTACTGGACCCGCTGCTACTGCTCTACC---CTCTTTTCAACGGCCT 239
consensus_2660#1      TAACTAATGAATGTTACTGGACCCGCTGCTACTGCTCTACCTCCCTCTTTTCAACGGCCT 300
                      *****************************************   ****************

consensus_2660#0      GTTTTTTTTAGATAGGTTTCTTTTTGCTATGGTTATTTCTTTTTGCTATGTTTGGTAGCG 299
consensus_2660#1      GTTTTTTTGAGATAGGTTTCTTTTTGCTATG-TTTTTTTTTTTGGTAGCGCCCA--CGCG 357
                      ******** ********************** ** *** **** *    *       ***

consensus_2660#0      TACCCCGGTGCTGTAAAGGAACAGGAAAAACAACGGACGTTACTGATACCTGTGTGCTTT 359
consensus_2660#1      TCCGCCCACGCGTCCGCGG----------------------------------------- 376
                      * * **   **      **                                         

consensus_2660#0      GCATGTTGCTGAATGTGTATGTCCTTGTTTGTTCGTGTATTTTATTGAACTACTTTAAAC 419
consensus_2660#1      ------------------------------------------------------------
                                                                                  

consensus_2660#0      GTAACAAACTTGACGAATAATGTTTTCTGTTGTTCGCAATTGTAATGCTCCCGGGTGCTG 479
consensus_2660#1      ------------------------------------------------------------
                                                                                  

consensus_2660#0      TTTTAAATCGGAAAAGTAAATGGTACAGCAAACCAAAATTCATGGATCGCAAAAACGGAC 539
consensus_2660#1      ------------------------------------------------------------
                                                                                  

consensus_2660#0      CCCATATGGTGCAACTGTAATTCTACTCCTATAATGCTCTCTCTGCATAGACTTCCCCCC 599
consensus_2660#1      ------------------------------------------------------------
                                                                                  

consensus_2660#0      CAGTCGTCGTTGCTTTTGTTTGCCTATTTTGCTTATTCCCAAAACTAACGCGCGCGTGCA 659
consensus_2660#1      ------------------------------------------------------------
                                                                                  

consensus_2660#0      CTGACGAGTTCCTTGCCACTCCTTCACAAACATTCCCATCTTAGGTCACTAGGTGTGGTA 719
consensus_2660#1      ------------------------------------------------------------
                                                                                  

consensus_2660#0      AGTTATTAGTGCAATGTGCAAATTGTTTCATGGTTAAATAGCTCTTTCTCCAGTGGGCCA 779
consensus_2660#1      ------------------------------------------------------------
                                                                                  

consensus_2660#0      ACAGTGCTCGAGGACC 795
consensus_2660#1      ----------------