These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2664#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [ATCGCCCCGAGGCTACTTGTCTTTATGATGTCGACCTGGCTGAGAAGTCGGACTCGATGAGAAGAAAAAGCTCGATTAATTGAGTCAAGAAAATAGCAATAGATAATGAAATTATCTCGTTCGCAACTGCCGAACGCGCGCTCTCGGGGTGGCGAAAGNGTGGTTTGTGTTTGCGCGTTCCCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCAGTGAGCATAGCAGACATGGAACAGGTGGAAGAATATTCAATTTGTAGACGAGAAACAGAACCTATAAAATGATTTAATATATTAAAACAATATACCANTGTCCAGAAAGGGCGACTAGCGTGTGCAATACGGGGAACAATGTGGAACGAAAAACGGACTGGTAGCAGNGAAAAGAGATTATAACAAACGAACGAACAANATGTGGATGGACGCTGNAGCANCANGTGCACACACTGANACCAAGGACTAANAGAACAGAAGCACGCACANTGCNACACGATACTGTGTTGTGCTACAAGTAGTTGCGNNGGCGGGTAAAGGATGGTNGAGCNTAAGAATCTTAGTAAGCATGGGTTGTTAATNCAAGANAGTTCTTCAGCNGCCCCGGNGACAATCCGTAAGANCAANCAGCAGCA] [+] EMBL AL934645 [ATCGCCCCGAGGCTACTTGTCTTTATGATGTCGACCTGGCTGAGAAGTCGGACTCGATGAGAAGAAAAAGCTCGATTAATTGAGTCAAGAAAATAGCAATAGATAATGAAATTATCTCGTTCGCAACTGCCGAACGCGCGCTCTCGGGGTGGCGAAAGNGTGGTTTGTGTTTGCGCGTTCCCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCAGTGAGCATAGCAGACATGGAACAGGTGGAAGAATATTCAATTTGTAGACGAGAAACAGAACCTATAAAATGATTTAATATATTAAAACAATATACCANTGTCCAGAAAGGGCGACTAGCGTGTGCAATACGGGGAACAATGTGGAACGAAAAACGGACTGGTAGCAGNGAAAAGAGATTATAACAAACGAACGAACAANATGTGGATGGACGCTGNAGCANCANGTGCACACACTGANACCAAGGACTAANAGAACAGAAGCACGCACANTGCNACACGATACTGTGTTGTGCTACAAGTAGTTGCGNNGGCGGGTAAAGGATGGTNGAGCNTAAGAATCTTAGTAAGCATGGGTTGTTAATNCAAGANAGTTCTTCAGCNGCCCCGGNGACAATCCGTAAGANCAANCAGCAGCA] consensusID : consensus_2664#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CGCGCTCTCGGGGGGCGAAAGGTGGTTTGTGTTTGCGCGTTCCCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCAGTGAGCATAGCAGACATGGAAAGGTGGAAGAATATTCAATTGTAGACGAGAAACAGAACCTATAAAATGATTTAATATATTAAAACAATATAAAATGTCAAGAAAGGGCGATAGCGTGTGCAATAGGGGGAAAATGTGGAAGAAAAACTGGATGGTAGAGGAAAAGAGATTATAACAAACGAACGAACAAATGTGGATGGACGTGAGAAAAGTGAAACATGAAACAAGATAAAAACAGAAGCACGCAATGCAAACATACTGTGTTGTGCTACAAGTAGTTGCGGGCGGGTAAAGATGGTAAATAAGAATCTTAGTAACATGGGTGTTAATTAAAATTTTCAGCAGCCCAGTGAAATCCGTAAGAACAACAGCAACAGCCTACAAAACAGACGAACAAACAAACGTAAATCACACAAACAGACACACACACACACATTTATTGGGCAAATAAAACTGCTTGAA] [+] EMBL BX627409 [CGCGCTCTCGGGGGGCGAAAGGTGGTTTGTGTTTGCGCGTTCCCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCAGTGAGCATAGCAGACATGGAAAGGTGGAAGAATATTCAATTGTAGACGAGAAACAGAACCTATAAAATGATTTAATATATTAAAACAATATAAAATGTCAAGAAAGGGCGATAGCGTGTGCAATAGGGGGAAAATGTGGAAGAAAAACTGGATGGTAGAGGAAAAGAGATTATAACAAACGAACGAACAAATGTGGATGGACGTGAGAAAAGTGAAACATGAAACAAGATAAAAACAGAAGCACGCAATGCAAACATACTGTGTTGTGCTACAAGTAGTTGCGGGCGGGTAAAGATGGTAAATAAGAATCTTAGTAACATGGGTGTTAATTAAAATTTTCAGCAGCCCAGTGAAATCCGTAAGAACAACAGCAACAGCCTACAAAACAGACGAACAAACAAACGTAAATCACACAAACAGACACACACACACACATTTATTGGGCAAATAAAACTGCTTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2664#0 ATCGCCCCGAGGCTACTTGTCTTTATGATGTCGACCTGGCTGAGAAGTCGGACTCGATGA 60 consensus_2664#1 ------------------------------------------------------------ consensus_2664#0 GAAGAAAAAGCTCGATTAATTGAGTCAAGAAAATAGCAATAGATAATGAAATTATCTCGT 120 consensus_2664#1 ------------------------------------------------------------ consensus_2664#0 TCGCAACTGCCGAACGCGCGCTCTCGGGGTGGCGAAAGNGTGGTTTGTGTTTGCGCGTTC 180 consensus_2664#1 ----------------CGCGCTCTCGGGG-GGCGAAAGG-TGGTTTGTGTTTGCGCGTTC 42 ************* ******** ******************** consensus_2664#0 CCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCA 240 consensus_2664#1 CCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCA 102 ************************************************************ consensus_2664#0 GTGAGCATAGCAGACATGGAACAGGTGGAAGAATATTCAATTTGTAGACGAGAAACAGAA 300 consensus_2664#1 GTGAGCATAGCAGACATGGAA-AGGTGGAAGAATATTCAATT-GTAGACGAGAAACAGAA 160 ********************* ******************** ***************** consensus_2664#0 CCTATAAAATGATTTAATATATTAAAACAATATACCANTGTCCAGAAAGGGCGACTAGCG 360 consensus_2664#1 CCTATAAAATGATTTAATATATTAAAACAATATAA-AATGTCAAGAAAGGGCGA-TAGCG 218 ********************************** * **** *********** ***** consensus_2664#0 TGTGCAATACGGGGAACAATGTGGAACGAAAAACGGACTGGTAGCAGNGAAAAGAGATTA 420 consensus_2664#1 TGTGCAATAGGGGGAA-AATGTGGAA-GAAAAACTGGATGGTAG--AGGAAAAGAGATTA 274 ********* ****** ********* ******* * ****** ************ consensus_2664#0 TAACAAACGAACGAACAANATGTGGATGGACGCTGNAGCANCANGTGCACACACTGANAC 480 consensus_2664#1 TAACAAACGAACGAACAAA-TGTGGATGGACGTGAGAAAAGTGAA---ACA---TGAAAC 327 ****************** ************ * * *** *** ** consensus_2664#0 CAAGGACTAANAGAACAGAAGCACGCACANTGCNACACGATACTGTGTTGTGCTACAAGT 540 consensus_2664#1 AAG-----ATAAAAACAGAAGCACGCA--ATGCAA-AC-ATACTGTGTTGTGCTACAAGT 378 * * * ************** *** * ** ********************* consensus_2664#0 AGTTGCGNNGGCGGGTAAAGGATGGTNGAGCNTAAGAATCTTAGTAAGCATGGGTTGTTA 600 consensus_2664#1 AGTTGCGG--GCGGGTAAAG-ATGGTAA---ATAAGAATCTTAGTAA-CATGGGT-GTTA 430 ******* ********** ***** *************** ******* **** consensus_2664#0 ATNCAAGANAGTTCTTCAGCNGCCCCGGNGACAATCCGTAAGANCAANCAGCAGCA---- 656 consensus_2664#1 ATTAAAA-----TTTTCAGCAGCCC-AGTGA-AATCCGTAAGAACAAC-AGCAACAGCCT 482 ** ** * ****** **** * ** *********** *** **** ** consensus_2664#0 ------------------------------------------------------------ consensus_2664#1 ACAAAACAGACGAACAAACAAACGTAAATCACACAAACAGACACACACACACACATTTAT 542 consensus_2664#0 ---------------------- consensus_2664#1 TGGGCAAATAAAACTGCTTGAA 564 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||