These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [GGAAGAGCTAGATGGACTGCATACAAAGATAGCCTAAAAGAGCGATAAGAACGTAAGATAAATGATCACTTTAAATTTAATACTTTTTAATTCAACTTCCCACTTCTCACCCCCCCCCCTCCCCTCTCCTTCATTACTGCCTAATGCAGGTGTTACTTACGAATGTTTTTGTTTGTTTATCTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGTTTTGCTATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTCTTTCCGTTTTCCGATTTCCACCTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATTTGTTTTTTCCAATCACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTGTGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCATCCACCGTTACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGAAAGGGAAGGGGCATGGAATCTGGCAAATGAATCTAAAATTTCAGCCTTCTCCATCAACGGTTCTCCACAGAGTTAC] [+] EMBL BX617208 [GGAAGAGCTAGATGGACTGCATACAAAGATAGCCTAAAAGAGCGATAAGAACGTAAGATAAATGATCACTTTAAATTTAATACTTTTTAATTCAACTTCCCACTTCTCACCCCCCCCCCTCCCCTCTCCTTCATTACTGCCTAATGCAGGTGTTACTTACGAATGTTTTTGTTTGTTTATCTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGTTTTGCTATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTCTTTCCGTTTTCCGATTTCCACCTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATTTGTTTTTTCCAATCACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTGTGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCATCCACCGTTACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGAAAGGGAAGGGGCATGGAATCTGGCAAATGAATCTAAAATTTCAGCCTTCTCCATCAACGGTTCTCCACAGAGTTAC] consensusID : consensus_2666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [ATCTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGGTTTTGCTATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTTCTTTCTGTTTTCCGATTTCCACTTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATATGTTTTTTTCTTCTTCCAAACACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTGTGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCCACCGTTACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGGACGGGAAGGGGCATGATGGAATCTGGCAAATGAATGTAAAATTCCAGCCACACTGATTCAACGGTTCTCCATCAACACAGAGTTACAGAAACACACACACAGACACAGTAAGATGTAATAAAAACGGAAATTAGATTT] [-] EMBL BM590487 [ATCTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGGTTTTGCTATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTTCTTTCTGTTTTCCGATTTCCACTTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATATGTTTTTTTCTTCTTCCAAACACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTGTGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCCACCGTTACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGGACGGGAAGGGGCATGATGGAATCTGGCAAATGAATGTAAAATTCCAGCCACACTGATTCAACGGTTCTCCATCAACACAGAGTTACAGAAACACACACACAGACACAGTAAGATGTAATAAAAACGGAAATTAGATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2666#0 GGAAGAGCTAGATGGACTGCATACAAAGATAGCCTAAAAGAGCGATAAGAACGTAAGATA 60 consensus_2666#1 ------------------------------------------------------------ consensus_2666#0 AATGATCACTTTAAATTTAATACTTTTTAATTCAACTTCCCACTTCTCACCCCCCCCCCT 120 consensus_2666#1 ------------------------------------------------------------ consensus_2666#0 CCCCTCTCCTTCATTACTGCCTAATGCAGGTGTTACTTACGAATGTTTTTGTTTGTTTAT 180 consensus_2666#1 ----------------------------------------------------------AT 2 ** consensus_2666#0 CTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTG-TTTTGCT 239 consensus_2666#1 CTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGGTTTTGCT 62 **************************************************** ******* consensus_2666#0 ATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTT-CTTTCCGTTTTCC 298 consensus_2666#1 ATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTTCTTTCTGTTTTCC 122 ********************************************** ***** ******* consensus_2666#0 GATTTCCACCTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATTTGTTTTTT------- 351 consensus_2666#1 GATTTCCACTTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATATGTTTTTTTCTTCTT 182 ********* ********************************** ******** consensus_2666#0 CCAATCACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTG 411 consensus_2666#1 CCAAACACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTG 242 **** ******************************************************* consensus_2666#0 TGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCATCCACCGTT 471 consensus_2666#1 TGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGA---TCCACCGTT 299 ************************************************ ********* consensus_2666#0 ACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGAAAGGGAAGGGGCAT 531 consensus_2666#1 ACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGGACGGGAAGGGGCAT 359 ********************************************* * ************ consensus_2666#0 G---GAATCTGGCAAATGAATCTAAAATTTCAGCCTTCTCCAT-CAACGGTTCTCCA--- 584 consensus_2666#1 GATGGAATCTGGCAAATGAATGTAAAATTCCAGCCACACTGATTCAACGGTTCTCCATCA 419 * ***************** ******* ***** ** ************* consensus_2666#0 ---CAGAGTTAC------------------------------------------------ 593 consensus_2666#1 ACACAGAGTTACAGAAACACACACACAGACACAGTAAGATGTAATAAAAACGGAAATTAG 479 ********* consensus_2666#0 ---- consensus_2666#1 ATTT 483 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||