These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CCGGGTTTTTGTGCACACCGGCTAGAACGGAGTGGAAAAAAGCGCCGGAAACCAATCGATAAACGCGCACGATGGGTTTGCTAACGAATCCATCCATTTCGCAAAAGGCTAAATATTGCCGCAAGCTGGTCCGCTACAATACGGCCATCTGTCTGACGCTGTATCTGCTGGGCGTTGGCTTTTTCTGCGCCCTGCCGGATGCCAACTTTAACTCCGGCACCTACTTTTCCGAGAATGCGCTACTGCCGGGACTGGTAAACTCCGAGCTGGAGATGGAAACGGTCAATCTGGTCAAATCGCTGTCCGGTGAGTTGCAACGGGAGCGGGAAAACTACCCGAAAGGGATGCCGTACCCGTGGCTGCTGGCAAAGATGCGACGGTTCGGGCTGGAGACACACACGCACAACTTTACGCTCAACTATCCGTTCGGGGGTGGAAAGCGCTTTAAAGGTGAAAACGTGTACGGCATACTGCGCGCCCCGCGCATTGCATCCACAGAAGCGATTGTGATAAGCGTACCCTATCGGCCACCGGAAACCGTCCACACGGACGTTTCGGCCGGTGTGCCGTTAATGCTCGCGTTCGCCGATTTTGCCCGCCGCAAGAAGTACTGGGCGAAGGACATTATTTTTCCTCGTCACCGAGCAGGAGCAGCTGGGAATGCA] [+] EMBL BM592312 [CCGGGTTTTTGTGCACACCGGCTAGAACGGAGTGGAAAAAAGCGCCGGAAACCAATCGATAAACGCGCACGATGGGTTTGCTAACGAATCCATCCATTTCGCAAAAGGCTAAATATTGCCGCAAGCTGGTCCGCTACAATACGGCCATCTGTCTGACGCTGTATCTGCTGGGCGTTGGCTTTTTCTGCGCCCTGCCGGATGCCAACTTTAACTCCGGCACCTACTTTTCCGAGAATGCGCTACTGCCGGGACTGGTAAACTCCGAGCTGGAGATGGAAACGGTCAATCTGGTCAAATCGCTGTCCGGTGAGTTGCAACGGGAGCGGGAAAACTACCCGAAAGGGATGCCGTACCCGTGGCTGCTGGCAAAGATGCGACGGTTCGGGCTGGAGACACACACGCACAACTTTACGCTCAACTATCCGTTCGGGGGTGGAAAGCGCTTTAAAGGTGAAAACGTGTACGGCATACTGCGCGCCCCGCGCATTGCATCCACAGAAGCGATTGTGATAAGCGTACCCTATCGGCCACCGGAAACCGTCCACACGGACGTTTCGGCCGGTGTGCCGTTAATGCTCGCGTTCGCCGATTTTGCCCGCCGCAAGAAGTACTGGGCGAAGGACATTATTTTTCCTCGTCACCGAGCAGGAGCAGCTGGGAATGCA] consensusID : consensus_2667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [CCGCCCACGCGTCCGCGTTAATGCTAGCGTTCGCCGATTTTGCCCGCCGCAAGAAGTACTGGGCGAAGGACATTATTTTCCTCGTCACCGAGCAGGAGCAGCTGGGAATGCAGGCCTGGCTGGAGGCGTACCATGGCGGCGACGAGGGGCGCATTCTCGATTCGGGACTGTTGCGTGCTCGGGCCGGCTCCATCCAAGCAGCCCTCAATCTGGAAGTGCAAAGTTTGGACATTAGTCATATAAACTTAAAAATTGAAGGACTCAACGGACAGCTTCCCAATCTGGACCTTCACAATCTGGTGCAGAAACTTTCGTCGAAGAATGGCATAATAGCGGGATACAAACAATCCTCCTCCAGCCCGAAACGATCCTTCCGCTACCAGGACAAGCTGCTCAATCTGCTGTCGATGGTGTTTTCGCAGGCGAGCGGCGTACCGACGGGAAATCATGGTCTTTTCCACAAGTACGGCATCGAAGCGCTAACGCTCGAAGCGGTCAAGCGGGAACGGACGCAGCAGCAGCAGTTTCAGGAGGTCGGTTCGATGCTGCGCATCATCGAGGGAATTAGCCGCAGCTTGAACAATCTGCTGGAGCGCTTTCATCAGAGCTTTTCTTCTATCTGCTCGTCTCGAACGA] [+] EMBL BM617268 [CCGCCCACGCGTCCGCGTTAATGCTAGCGTTCGCCGATTTTGCCCGCCGCAAGAAGTACTGGGCGAAGGACATTATTTTCCTCGTCACCGAGCAGGAGCAGCTGGGAATGCAGGCCTGGCTGGAGGCGTACCATGGCGGCGACGAGGGGCGCATTCTCGATTCGGGACTGTTGCGTGCTCGGGCCGGCTCCATCCAAGCAGCCCTCAATCTGGAAGTGCAAAGTTTGGACATTAGTCATATAAACTTAAAAATTGAAGGACTCAACGGACAGCTTCCCAATCTGGACCTTCACAATCTGGTGCAGAAACTTTCGTCGAAGAATGGCATAATAGCGGGATACAAACAATCCTCCTCCAGCCCGAAACGATCCTTCCGCTACCAGGACAAGCTGCTCAATCTGCTGTCGATGGTGTTTTCGCAGGCGAGCGGCGTACCGACGGGAAATCATGGTCTTTTCCACAAGTACGGCATCGAAGCGCTAACGCTCGAAGCGGTCAAGCGGGAACGGACGCAGCAGCAGCAGTTTCAGGAGGTCGGTTCGATGCTGCGCATCATCGAGGGAATTAGCCGCAGCTTGAACAATCTGCTGGAGCGCTTTCATCAGAGCTTTTCTTCTATCTGCTCGTCTCGAACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2667#0 CCGGGTTTTTGTGCACACCGGCTAGAACGGAGTGGAAAAAAGCGCCGGAAACCAATCGAT 60 consensus_2667#1 ------------------CCGCCCACGCGTCCGCGTTAATGCTAGCGTTCGCCGATTTTG 42 * ** ** * ** ** ** ** consensus_2667#0 AAACGCGCACGATGGGTTTGCTAACGAAT-CCATCCATTTCGCAAAAGGCTAAATATTGC 119 consensus_2667#1 CCCGCCGCAAGAAGTACTGGGCGAAGGACATTATTTTCCTCGTCACCGAGCAGGAGCAGC 102 **** ** * * * * * * ** *** * * * ** consensus_2667#0 CGCAA--GCTGGTCCGCTACAATACG-GCCATCTGTCTGACGCTGTATCTGCTGGGCGTT 176 consensus_2667#1 TGGGAATGCAGGCCTGGCTGGAGGCGTACCATGGCGGCGACGAGGGGCGCATTCTCGATT 162 * * ** ** * * * ** **** **** * * ** consensus_2667#0 GGCTTTTTCTGCGCCCTGCCGGATGCCAACTTTAACTCCGGCACCTACTTTTCCGAGAAT 236 consensus_2667#1 CGGGACTGTTGCGTGCT--CGG--GCCGGCTCCATC-CAAGCAGCCCTCAATCTGGAAGT 217 * * **** ** *** *** ** * * * *** * ** * * * consensus_2667#0 GCGCTACTGCCGGGACTGGTAAACTCCGAGCTGGAGATGGAAACGGTCAATCTGGTCAAA 296 consensus_2667#1 GCAA-AGTTTGGACATTAGTCA-TATAAACTTAAAAATTGAAGGACTCAA-CGGACAGCT 274 ** * * * * * ** * * * * ** *** **** * * consensus_2667#0 TCGCTGTCCGGTGAGTTGCAACGGGAGCGGGAAAACTACCCGAAAGGGATGCCGTACCCG 356 consensus_2667#1 TCCCAATCTGGACCTTCACAATCTG-GTGCAGAAACTTTCGTCGAAGAATGGCATAATAG 333 ** * ** ** * *** * * * ***** * * * *** * ** * consensus_2667#0 TGGCTGCTGGCAAAGATGCGACGGTTCGGGCTGGAGACACACACGCACAACTTTACGCTC 416 consensus_2667#1 CGG-----GATACAAACAATCCTCCTCCAGCCCGAAACG-ATCCTTCCGCTACCAGGACA 387 ** * * * * * ** ** ** ** * * * * * consensus_2667#0 AACTATCCGTTCGGGGGTGGAAAGCGCTTTAAAGGTGAAAACGTGTACGGCATACTGCGC 476 consensus_2667#1 AGCTGCTCAATCTGCTGTCGATGGTGTTTTCGCAGGCGAGCGGCGTACCG---ACGGGAA 444 * ** * ** * ** ** * * *** * * * **** * ** * consensus_2667#0 GCCCCGCGCATTGCATCCACAGAAGCGATTGTGATAAGCGTACCCT---ATCGGCCACCG 533 consensus_2667#1 ATCATGGTCTTT---TCCACAAGTACGGCATCGAAGCGCTAACGCTCGAAGCGGTCAAGC 501 * * * ** ****** ** ** ** ** ** * *** ** consensus_2667#0 GAAACCGTCCACA----CGGACGTTTCGGCCGGTGTGC-CGTTAATGCTCGCGTTCGCCG 588 consensus_2667#1 GGGAACGGACGCAGCAGCAGCAGTTTCAGGAGGTCGGTTCGATGCTGCGCATCATCGAGG 561 * * ** * ** * * ***** * *** * ** * *** * *** * consensus_2667#0 ATTTTGCCCGCCGCAAGAAGTACTGGGCGAAGGACATT-ATTTTTCCTCGTCACCGAGCA 647 consensus_2667#1 GAATTAGCCGCAGCTTGAACAATCTGCTGGAGCGCTTTCATCAGAGCTTTTCTTCTATCT 621 ** **** ** *** * * * ** * ** ** ** ** * * * consensus_2667#0 GGAGCAGCTGGGAATGCA 665 consensus_2667#1 GC--TCGTCTCGAACGA- 636 * * *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||