These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [TGAGCAACTTCGTTAGTGCGGGTACAAGATCAGGGTAGACACGTGTATGGGACAGAAAGCCACAAGCAATAGTCGCACGGAATTGAGACGGGGAAAATCAAAGAGAGCTGTTAAAAATGTGTGTGCCATCGAATCGAATTTTAAGCAGCCGGGGCAAATGGGGGGAATCGGGATACTCTCCAAAACTGTCGACCTCGGTTTGTTTGTGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTCTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACAACACGCTCAGAGCGCGCGCGTTTGCGCTAAAGCAGAGTGGCCGAGAGACTTATCGACCCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCG] [+] EMBL BX628672 [TGAGCAACTTCGTTAGTGCGGGTACAAGATCAGGGTAGACACGTGTATGGGACAGAAAGCCACAAGCAATAGTCGCACGGAATTGAGACGGGGAAAATCAAAGAGAGCTGTTAAAAATGTGTGTGCCATCGAATCGAATTTTAAGCAGCCGGGGCAAATGGGGGGAATCGGGATACTCTCCAAAACTGTCGACCTCGGTTTGTTTGTGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTCTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACAACACGCTCAGAGCGCGCGCGTTTGCGCTAAAGCAGAGTGGCCGAGAGACTTATCGACCCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCG] consensusID : consensus_2670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [CCGCGGTTTGTTCGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTACTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACGACACGCTCAGAGCTGAGTGGCCGAGAGACTTATCGACTCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCGGTTTGAAAGAAGAAGAAAAAAAAACTTCGCCGTGTGTAGTGTTGTTGCAGAATGTACTGTGATGTGAAGAAAGGGGCGAATAATTATCAAGTTTTTGGATGTTTG] [+] EMBL BM638307 [CCGCGGTTTGTTCGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTACTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACGACACGCTCAGAGCTGAGTGGCCGAGAGACTTATCGACTCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCGGTTTGAAAGAAGAAGAAAAAAAAACTTCGCCGTGTGTAGTGTTGTTGCAGAATGTACTGTGATGTGAAGAAAGGGGCGAATAATTATCAAGTTTTTGGATGTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2670#0 TGAGCAACTTCGTTAGTGCGGGTACAAGATCAGGGTAGACACGTGTATGGGACAGAAAGC 60 consensus_2670#1 ------------------------------------------------------------ consensus_2670#0 CACAAGCAATAGTCGCACGGAATTGAGACGGGGAAAATCAAAGAGAGCTGTTAAAAATGT 120 consensus_2670#1 ------------------------------------------------------------ consensus_2670#0 GTGTGCCATCGAATCGAATTTTAAGCAGCCGGGGCAAATGGGGGGAATCGGGATACTCTC 180 consensus_2670#1 ------------------------------------------------------------ consensus_2670#0 CAAAACTGTCGACCTCGGTTTGTTTGTGTTTTTTTTTTAATTTAAATTAGCAAATTAATC 240 consensus_2670#1 ------------CCGCGGTTTGTTCGT--TTTTTTTTTAATTTAAATTAGCAAATTAATC 46 ** ********* ** ******************************* consensus_2670#0 AAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAA 300 consensus_2670#1 AAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAA 106 ************************************************************ consensus_2670#0 AGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGT-CTGTTTGTGTGCTAGCAGAAACG 359 consensus_2670#1 AGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTACTGTTTGTGTGCTAGCAGAAACG 166 ************************************ *********************** consensus_2670#0 TTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAAACAAACAAATCAA 419 consensus_2670#1 TTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAA-CAAACAAATCAA 225 *********************************************** ************ consensus_2670#0 AACTAAACAAAGCGGTTACAACACGCTCAGAGCGCGCGCGTTTGCGCTAAAGCAGAGTGG 479 consensus_2670#1 AACTAAACAAAGCGGTTACGACACGCTCAGAGCT--------------------GAGTGG 265 ******************* ************* ****** consensus_2670#0 CCGAGAGACTTATCGACCCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGC 539 consensus_2670#1 CCGAGAGACTTATCGACTCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGC 325 ***************** ****************************************** consensus_2670#0 AGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCG------------- 586 consensus_2670#1 AGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCGGTTTGAAAGAAGA 385 *********************************************** consensus_2670#0 ------------------------------------------------------------ consensus_2670#1 AGAAAAAAAAACTTCGCCGTGTGTAGTGTTGTTGCAGAATGTACTGTGATGTGAAGAAAG 445 consensus_2670#0 -------------------------------- consensus_2670#1 GGGCGAATAATTATCAAGTTTTTGGATGTTTG 477 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||