These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2688#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CCGAACTTTGAAGGTTGCCACTGAAGGTGGTGTTTGCTGTGAAGATGCGGACGATCGTTTGTGTGGCGTTGCTTTGTATAAGCACCCTGTCGCTGACACACGGACAGCGACGGTTCCCTGAAGGGTTTAAGTTTGGCGTCGGTACATCGGCGTACCAGATCGAGGGAGGATGGAACGAGGACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTGACCGAACCAATGGAGATGTGGCCTGCGACTGTTACCATAATTGGCGTCGTGATGTGGAAATGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATACTCCCGACGGGCATCAGCAATCAGGTGAACGAGAAAGGTGTGGAATACTACAACAATCTTATCAACGAGCTGCTAAAGTATAACATCACACCGATGGTGACGCTGTTCCACTGGGACACACCGCAGCGGCTGCAGGAGATGGGAGGCTTTACAAACCGGCTTATTGTGGGATATTTCCGCGAGTATGCAAGGATTGCGTTCGAGCGATTTGGCGATCGGGTAAAGATCTGGACAACGTTCAACGAGCCGCCGCAAACCTGCCGTCTTCCGTACGAGTATGATGCGATGGCACCGGGGCTGGATTTT] [+] EMBL BM603482 [CCGAACTTTGAAGGTTGCCACTGAAGGTGGTGTTTGCTGTGAAGATGCGGACGATCGTTTGTGTGGCGTTGCTTTGTATAAGCACCCTGTCGCTGACACACGGACAGCGACGGTTCCCTGAAGGGTTTAAGTTTGGCGTCGGTACATCGGCGTACCAGATCGAGGGAGGATGGAACGAGGACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTGACCGAACCAATGGAGATGTGGCCTGCGACTGTTACCATAATTGGCGTCGTGATGTGGAAATGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATACTCCCGACGGGCATCAGCAATCAGGTGAACGAGAAAGGTGTGGAATACTACAACAATCTTATCAACGAGCTGCTAAAGTATAACATCACACCGATGGTGACGCTGTTCCACTGGGACACACCGCAGCGGCTGCAGGAGATGGGAGGCTTTACAAACCGGCTTATTGTGGGATATTTCCGCGAGTATGCAAGGATTGCGTTCGAGCGATTTGGCGATCGGGTAAAGATCTGGACAACGTTCAACGAGCCGCCGCAAACCTGCCGTCTTCCGTACGAGTATGATGCGATGGCACCGGGGCTGGATTTT] consensusID : consensus_2688#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [AATCGCCCGAGCGGCGTACAGATCGAGGGAGGATGGAACGAGGACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTGACCGAACCAATGGAGATGTGGCCTGTGACAGTTACCATAATTGGCGTCGTGATGTGGAAATGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATTACTCCCCAACAGGCATCAGCCAATCAGGTGAACGAGAAACGGTGTGGAATACTACAACAAAGTCTTTATTCAAACGGAGGCCTGCNTAAAGGTATAACCATCACAAC] [+] EMBL AL934662 [AATCGCCCGAGCGGCGTACAGATCGAGGGAGGATGGAACGAGGACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTGACCGAACCAATGGAGATGTGGCCTGTGACAGTTACCATAATTGGCGTCGTGATGTGGAAATGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATTACTCCCCAACAGGCATCAGCCAATCAGGTGAACGAGAAACGGTGTGGAATACTACAACAAAGTCTTTATTCAAACGGAGGCCTGCNTAAAGGTATAACCATCACAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2688#0 CCGAACTTTGAAGGTTGCCACTGAAGGTGGTGTTTGCTGTGAAGATGCGGACGATCGTTT 60 consensus_2688#1 ------------------------------------------------------------ consensus_2688#0 GTGTGGCGTTGCTTTGTATAAGCACCCTGTCGCTGACACACGGACAGCGACGGTTCCCTG 120 consensus_2688#1 ------------------------------------------------------------ consensus_2688#0 AAGGGTTTAAGTTTGGCGTCGGTACATCGGCGTACCAGATCGAGGGAGGATGGAACGAGG 180 consensus_2688#1 ----------------AATCGCCCGAGCGGCGTAC-AGATCGAGGGAGGATGGAACGAGG 43 *** * ******** ************************ consensus_2688#0 ACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTG 240 consensus_2688#1 ACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTG 103 ************************************************************ consensus_2688#0 ACCGAACCAATGGAGATGTGGCCTGCGACTGTTACCATAATTGGCGTCGTGATGTGGAAA 300 consensus_2688#1 ACCGAACCAATGGAGATGTGGCCTGTGACAGTTACCATAATTGGCGTCGTGATGTGGAAA 163 ************************* *** ****************************** consensus_2688#0 TGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCAT-ACTC 359 consensus_2688#1 TGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATTACTC 223 ******************************************************* **** consensus_2688#0 CC-GACGGGCATCAGC-AATCAGGTGAACGAGAAA-GGTGTGGAATACTACAACAATCTT 416 consensus_2688#1 CCCAACAGGCATCAGCCAATCAGGTGAACGAGAAACGGTGTGGAATACTACAACAAAGTC 283 ** ** ********* ****************** ******************** * consensus_2688#0 ATCAACGAGCTGCTAAA--GTATAACATCACACCGATGGTGACGCTGTTCCACTGGGACA 474 consensus_2688#1 TTTATTCAAACGGAGGCCTGCNTAAAGGTATAACCATCACAAC----------------- 326 * * * * * *** * * * ** ** consensus_2688#0 CACCGCAGCGGCTGCAGGAGATGGGAGGCTTTACAAACCGGCTTATTGTGGGATATTTCC 534 consensus_2688#1 ------------------------------------------------------------ consensus_2688#0 GCGAGTATGCAAGGATTGCGTTCGAGCGATTTGGCGATCGGGTAAAGATCTGGACAACGT 594 consensus_2688#1 ------------------------------------------------------------ consensus_2688#0 TCAACGAGCCGCCGCAAACCTGCCGTCTTCCGTACGAGTATGATGCGATGGCACCGGGGC 654 consensus_2688#1 ------------------------------------------------------------ consensus_2688#0 TGGATTTT 662 consensus_2688#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||