These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [AGGGCGTGTAAGGTAGAACCGCGTTCGTTCAGCGAGAACCGGCTATTGTTTCCTTTTCCCATCCCGCTTCGAAAGCATTTTTTGAAAATGTGTCCTTATAAATTATTTCAATTGTTTGTGCAAGAAAAAAAGCTCTCCCACGTGGCTTACAGGGTTTTCCAGGAGTTCTCATAGTTTTCATAGAGTTCTCAATTGGGAATTGGACTCTATAGCACCATTGTTGGAAAATTCCAGTAAGATTTTTCAATGAGTCTGGCCATAAAATCCAATTTCCAACATATGAAGTTCACTTCCAATAGGAAAGAATCAAGGAAATGTCCCACAGTTATGAGAACCACCGCGGAAACCCTGTACGACTGTTTTCTTTCAAATTGATGTTAATTGGATGGTATGTTTTAAAACGTTAAGCGTTATTGGGCCAGTATTGTGTGTTTTTTTTAAAGAAAATTAATTAAAAAGAGGATAAAAATGAGAACTGTTTAGGCAATTTAAAACCCTTCTGTTAGCGAATTAAACCAAAAAAAATTAGTGTTACCAAAATTCAAAACCACAAAACCCCCCTTCGCCCTCCCCCCCCTTCTATTGGAAACACAATGGCGCCATTAATGGTGATAACACCACCGTATGCATGTTTAACCGCACACGTACGCT] [+] EMBL BX626859 [AGGGCGTGTAAGGTAGAACCGCGTTCGTTCAGCGAGAACCGGCTATTGTTTCCTTTTCCCATCCCGCTTCGAAAGCATTTTTTGAAAATGTGTCCTTATAAATTATTTCAATTGTTTGTGCAAGAAAAAAAGCTCTCCCACGTGGCTTACAGGGTTTTCCAGGAGTTCTCATAGTTTTCATAGAGTTCTCAATTGGGAATTGGACTCTATAGCACCATTGTTGGAAAATTCCAGTAAGATTTTTCAATGAGTCTGGCCATAAAATCCAATTTCCAACATATGAAGTTCACTTCCAATAGGAAAGAATCAAGGAAATGTCCCACAGTTATGAGAACCACCGCGGAAACCCTGTACGACTGTTTTCTTTCAAATTGATGTTAATTGGATGGTATGTTTTAAAACGTTAAGCGTTATTGGGCCAGTATTGTGTGTTTTTTTTAAAGAAAATTAATTAAAAAGAGGATAAAAATGAGAACTGTTTAGGCAATTTAAAACCCTTCTGTTAGCGAATTAAACCAAAAAAAATTAGTGTTACCAAAATTCAAAACCACAAAACCCCCCTTCGCCCTCCCCCCCCTTCTATTGGAAACACAATGGCGCCATTAATGGTGATAACACCACCGTATGCATGTTTAACCGCACACGTACGCT] consensusID : consensus_271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [TGTTCAGTCACTCTAGTAGCAGCAACCCACTGGAAGCGGTGTTTTGTTGCGATATACAAAACGCGTGGGAAGAAAAGCTCGCAAAAAAAATAAATGAAGAGAAAGGAGAAGAAAGACGTTAGAGAAAGAGAGAGAGAGAGAGAAAAAAAAACAAACAAACAAAAAAACCCTAAACAGAATATAGCGCTAAATTTTAATTAAAATTAACGTTACAAATGGTAAAAGGAATTAATAACAGAAGAAAGCCCTAAATCTACTACTTTTATTAATTCCTTTTACCATTTGTAACGCTAAATTTTAATTAAAATTAACGTTACAAATGGTAAAAGAAGAAATAAAGAAAACCAGCCCATACGAAATGGTGGGAGGAAATAGAAATCTCTAACTTAGTGACAGAGATGCTGAAAATCTATTGTTAGTCGAAATATTTACTAGGATACCGATGATTTAATGGCATAAGTGAATCACAAAACAACACATACACAAACACACACACGCACACCTATACACAACGACACATCAGACACGCGTACATCCCCAAATACACAGATGATAATGAATAAAACCTTTCTAGTTATAAAACAAAACAAACAGAGAAAGCCATGTCGTTGAATAATAAAAGTAAAAG] [+] EMBL BX618167 [TGTTCAGTCACTCTAGTAGCAGCAACCCACTGGAAGCGGTGTTTTGTTGCGATATACAAAACGCGTGGGAAGAAAAGCTCGCAAAAAAAATAAATGAAGAGAAAGGAGAAGAAAGACGTTAGAGAAAGAGAGAGAGAGAGAGAAAAAAAAACAAACAAACAAAAAAACCCTAAACAGAATATAGCGCTAAATTTTAATTAAAATTAACGTTACAAATGGTAAAAGGAATTAATAACAGAAGAAAGCCCTAAATCTACTACTTTTATTAATTCCTTTTACCATTTGTAACGCTAAATTTTAATTAAAATTAACGTTACAAATGGTAAAAGAAGAAATAAAGAAAACCAGCCCATACGAAATGGTGGGAGGAAATAGAAATCTCTAACTTAGTGACAGAGATGCTGAAAATCTATTGTTAGTCGAAATATTTACTAGGATACCGATGATTTAATGGCATAAGTGAATCACAAAACAACACATACACAAACACACACACGCACACCTATACACAACGACACATCAGACACGCGTACATCCCCAAATACACAGATGATAATGAATAAAACCTTTCTAGTTATAAAACAAAACAAACAGAGAAAGCCATGTCGTTGAATAATAAAAGTAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_271#0 AGGGCGTGTAAGGTAGAACCGCGTTCGTTCAGCGAGAACCGGCTATTGTTTCCTTTTCCC 60 consensus_271#1 --TGTTCAGTCACTCTAGTAGCAGCAACCCACTGGAAGCGGTGTTTTGTTGCGATATAC- 57 * * * ** ** * * * * * ***** * * * * consensus_271#0 ATCCCGCTTCGAAAGCATTTTTTG---AAAATGTGTCCTTATAAATTATTTCAATTGTTT 117 consensus_271#1 AAAACGCGTGGGAAGAAAAGCTCGCAAAAAAAATAAATGAAGAGAAAGGAGAAGAAAGAC 117 * *** * * *** * * * **** * * * * * consensus_271#0 GTGCAAGAAAAAAAGCTCTCCCACGTGGCTTACAGGGTTTTCCAGGAGTTCTCATAGTTT 177 consensus_271#1 GTTAGAGAAAGAGAGAGAGAGAGAGAAAAAAAAACAAACAAACAAAAAAACCC-TAAACA 176 ** ***** * ** * * * ** * * * ** consensus_271#0 TCATAGAGTTCTCAATTGGGAATTGGACTCTATAGCACCATTGTTGGAA------AATTC 231 consensus_271#1 GAATATAGCGCTAAATTTT-AATTAAAATTAACGTTACAAATGGTAAAAGGAATTAATAA 235 *** ** ** **** **** * * * ** * ** * ** *** consensus_271#0 CAGTAAGATTTTTCAATGAGTCTGGCCATAA-AATCCAATTTCCAACATATGAAGTTCAC 290 consensus_271#1 CAGAAGAAAGCCCTAAATCTACTACTTTTATTAATTCCTTTTACCATTTGTAACGCTAAA 295 *** * * ** ** ** *** * *** * * * * * * * * consensus_271#0 TTCCAATAGGAAAGAATCAAGGAAATGTCCCAC-----AGTTATGAGAACCACCGCG--- 342 consensus_271#1 TTTTAATTAAAATTAACGTTACAAATGGTAAAAGAAGAAATAAAGAAAACCAGCCCATAC 355 ** *** ** ** ***** * * * * ** ***** * * consensus_271#0 GAAACCCTGTACG--ACTGTTTTCTTTCAAATTGATGTTAATTGGATGGTATGTTTTAAA 400 consensus_271#1 GAAATGGTGGGAGGAAATAGAAATCTCTAACTTAGTGACAGAGATGCTGAAAATCT---A 412 **** ** * * * * ** ** ** * * * * * * consensus_271#0 ACGTTAAGCGTTAT-TGGGCCAGTATTGTGTGTTTTTTTTAAAGAAAATTAATTA-AAAA 458 consensus_271#1 TTGTTAGTCGAAATATTTACTAGGATACCGATGATTTAATGGCATAAGTGAATCACAAAA 472 **** ** ** * * ** ** * *** * ** * *** * **** consensus_271#0 GAGGATAAAAATGAGAACTGTTTAGGCAATTTAAAACCCTTCTGTTAGCGAATTAAACCA 518 consensus_271#1 CAACACATACACAAACAC-ACACACGCACACCTATACACAAC----GACACATCAGACAC 527 * * * * * * ** * *** * ** * * * ** * ** consensus_271#0 AAAAAAATTAGTGTTACCAAAATTCAAAACCACAAAACCCCCCTTCGCCCTCCCCCCCCT 578 consensus_271#1 GCGTACATCCCCAAATACACAGATGATAATGAATAAAACCTTTCTAGTTATAAAACAAAA 587 * ** ** * * * ** * *** ** * * * * consensus_271#0 TCTATTGGAAACACAATGGCGCC-ATTAATGGTGATAACACCACCGTATGCATGTTTAAC 637 consensus_271#1 CAAACAGAGAAAGCCATGTCGTTGAATAATAAAAGTAAAAG------------------- 628 * * ** * *** ** * **** *** * consensus_271#0 CGCACACGTACGCT 651 consensus_271#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||