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Anopheles gambiae
cluster # 2711 cluster # 2711       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2711#0 length = 757 sequences # 1  
consensus_2711#1 length = 753 sequences # 1  

consensusID : consensus_2711#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 757
fasta sequence
                              [TCATTCAATTTAACACAACAAAAACGATTCGATAGAAATGATTGTAGCCATTCAAGAAAGAAAGGAGAGAAGCCAAGTTTCTTGAATTTAGCAATGAGCAGAGAATGGGGGATTTTATCAAACGCAGCTTTGAAATCGGTATACACAGCATCAACCTGCATGCCAGAGTCCAGATTTAAGAGTACTGAGGAAACAAATTCCATAAGATTAGTAGTGGTGGAGCGGCCAGCCATAAAGCCATGTTGATTTGGAATGATCCACGATTTCACCATTTCCATTAGAGGTAAACGAATAACAGATTCAAAGACTTTGCTGAACGCCGATAAAATAGATATGCCACGATAATTAGAGATACAACCACGATCACCCTTTTTAAAAACTGGCCTTATCCATGCTTGTTTCCAAATATTCGGAAAAGTAGCCGTAGACAAAGAAAGATTAAAAAGGAAAGAAACAGGAAGGGCTAGTGCTTCACGACAGTGAAAGAGTAAAGCAGCAGGAATACCATCGGGACCCGGCACTGAGGATGGTTTAAGGTTACCTAACGCACGTAAAACAGAAGCTCTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACTACGATGTGTTCAGATTAATAGCTTTATTCCAACTGACTATTCTATAAGGGTATACATGTATACTACGATCGTACNATAACTA]

[+] EMBL BX621696             [TCATTCAATTTAACACAACAAAAACGATTCGATAGAAATGATTGTAGCCATTCAAGAAAGAAAGGAGAGAAGCCAAGTTTCTTGAATTTAGCAATGAGCAGAGAATGGGGGATTTTATCAAACGCAGCTTTGAAATCGGTATACACAGCATCAACCTGCATGCCAGAGTCCAGATTTAAGAGTACTGAGGAAACAAATTCCATAAGATTAGTAGTGGTGGAGCGGCCAGCCATAAAGCCATGTTGATTTGGAATGATCCACGATTTCACCATTTCCATTAGAGGTAAACGAATAACAGATTCAAAGACTTTGCTGAACGCCGATAAAATAGATATGCCACGATAATTAGAGATACAACCACGATCACCCTTTTTAAAAACTGGCCTTATCCATGCTTGTTTCCAAATATTCGGAAAAGTAGCCGTAGACAAAGAAAGATTAAAAAGGAAAGAAACAGGAAGGGCTAGTGCTTCACGACAGTGAAAGAGTAAAGCAGCAGGAATACCATCGGGACCCGGCACTGAGGATGGTTTAAGGTTACCTAACGCACGTAAAACAGAAGCTCTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACTACGATGTGTTCAGATTAATAGCTTTATTCCAACTGACTATTCTATAAGGGTATACATGTATACTACGATCGTACNATAACTA]


>consensus_2711#0 TCATTCAATTTAACACAACAAAAACGATTCGATAGAAATGATTGTAGCCATTCAAGAAAG AAAGGAGAGAAGCCAAGTTTCTTGAATTTAGCAATGAGCAGAGAATGGGGGATTTTATCA AACGCAGCTTTGAAATCGGTATACACAGCATCAACCTGCATGCCAGAGTCCAGATTTAAG AGTACTGAGGAAACAAATTCCATAAGATTAGTAGTGGTGGAGCGGCCAGCCATAAAGCCA TGTTGATTTGGAATGATCCACGATTTCACCATTTCCATTAGAGGTAAACGAATAACAGAT TCAAAGACTTTGCTGAACGCCGATAAAATAGATATGCCACGATAATTAGAGATACAACCA CGATCACCCTTTTTAAAAACTGGCCTTATCCATGCTTGTTTCCAAATATTCGGAAAAGTA GCCGTAGACAAAGAAAGATTAAAAAGGAAAGAAACAGGAAGGGCTAGTGCTTCACGACAG TGAAAGAGTAAAGCAGCAGGAATACCATCGGGACCCGGCACTGAGGATGGTTTAAGGTTA CCTAACGCACGTAAAACAGAAGCTCTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTC TGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATA CTTAGTTGCCAGACTACGATGTGTTCAGATTAATAGCTTTATTCCAACTGACTATTCTAT AAGGGTATACATGTATACTACGATCGTACNATAACTA



consensusID : consensus_2711#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 753
fasta sequence
                              [GCATCCAGTAAGATTTGAACCGTTCTGGTAATTTGATAACTCTTCGACTTCTTTCCAAAATTGATGATTGCTGCTCTTGCTGTTGAACAACTGGTTCTTTGCAGTGTAATGGGCGCATCTGAAGTTTCGGCATCAATGCGAGAGAGTAGTCTGGCTCGTATGTCTGCGTAGGTTTGACCTTTTAATCCACAAATAAATACTAAACACTTGAAATGGTCAGCCTTCATGTTGTGGAATTCTGAATCTTCACAAGCCCGGTTCACTTTCGCCGCGTAACTAATAATGTCATCTGCTTCGGTTTTGACGAGCTAAAGACAACGGTAACGTCTGCTAAAAAGTGAACTCTGCGACCCGAAAATTTTCGATAATGTTTGCACAGTTTCCTTGAAAGTTAGCTCCTTCGGAAGTTTCGGGAGGATGTAATTGGTGTACTGGTTGTGTGCTTGTGCATCCAACTTCCTCAGTAAAAGCCTGACCTTAGCGACATCTTCGAGTTCTTTGGCATCCGACTCGAACAAATCTTCATAACGTCGAAACCATTTTTGAAAAGTTCCTCCGTTCTCTGGATCGAAAGTAAACTCGGTCATGTTCATTGCCACGAATCGTTCCGTATTATTTGTACCCGTTGATGTTTCTGATAGCTTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACT]

[-] EMBL BX627796             [GCATCCAGTAAGATTTGAACCGTTCTGGTAATTTGATAACTCTTCGACTTCTTTCCAAAATTGATGATTGCTGCTCTTGCTGTTGAACAACTGGTTCTTTGCAGTGTAATGGGCGCATCTGAAGTTTCGGCATCAATGCGAGAGAGTAGTCTGGCTCGTATGTCTGCGTAGGTTTGACCTTTTAATCCACAAATAAATACTAAACACTTGAAATGGTCAGCCTTCATGTTGTGGAATTCTGAATCTTCACAAGCCCGGTTCACTTTCGCCGCGTAACTAATAATGTCATCTGCTTCGGTTTTGACGAGCTAAAGACAACGGTAACGTCTGCTAAAAAGTGAACTCTGCGACCCGAAAATTTTCGATAATGTTTGCACAGTTTCCTTGAAAGTTAGCTCCTTCGGAAGTTTCGGGAGGATGTAATTGGTGTACTGGTTGTGTGCTTGTGCATCCAACTTCCTCAGTAAAAGCCTGACCTTAGCGACATCTTCGAGTTCTTTGGCATCCGACTCGAACAAATCTTCATAACGTCGAAACCATTTTTGAAAAGTTCCTCCGTTCTCTGGATCGAAAGTAAACTCGGTCATGTTCATTGCCACGAATCGTTCCGTATTATTTGTACCCGTTGATGTTTCTGATAGCTTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACT]


>consensus_2711#1 GCATCCAGTAAGATTTGAACCGTTCTGGTAATTTGATAACTCTTCGACTTCTTTCCAAAA TTGATGATTGCTGCTCTTGCTGTTGAACAACTGGTTCTTTGCAGTGTAATGGGCGCATCT GAAGTTTCGGCATCAATGCGAGAGAGTAGTCTGGCTCGTATGTCTGCGTAGGTTTGACCT TTTAATCCACAAATAAATACTAAACACTTGAAATGGTCAGCCTTCATGTTGTGGAATTCT GAATCTTCACAAGCCCGGTTCACTTTCGCCGCGTAACTAATAATGTCATCTGCTTCGGTT TTGACGAGCTAAAGACAACGGTAACGTCTGCTAAAAAGTGAACTCTGCGACCCGAAAATT TTCGATAATGTTTGCACAGTTTCCTTGAAAGTTAGCTCCTTCGGAAGTTTCGGGAGGATG TAATTGGTGTACTGGTTGTGTGCTTGTGCATCCAACTTCCTCAGTAAAAGCCTGACCTTA GCGACATCTTCGAGTTCTTTGGCATCCGACTCGAACAAATCTTCATAACGTCGAAACCAT TTTTGAAAAGTTCCTCCGTTCTCTGGATCGAAAGTAAACTCGGTCATGTTCATTGCCACG AATCGTTCCGTATTATTTGTACCCGTTGATGTTTCTGATAGCTTCTGCAGAGCCTTCAAA ATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTC GTCGCCAATTGTTATATACTTAGTTGCCAGACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2711#0      ------------------------------------------------------------
consensus_2711#1      GCATCCAGTAAGATTTGAACCGTTCTGGTAATTTGATAACTCTTCGACTTCTTTCCAAAA 60
                                                                                  

consensus_2711#0      --------------------------TCATTCAATTTAACACAACAAAAACGATTCGATA 34
consensus_2711#1      TTGATGATTGCTGCTCTTGCTGTTGAACAACTGGTTCTTTGCAGTGTAATGGGCGCATCT 120
                                                 **     **     **    **  *   *    

consensus_2711#0      GAAATGATTGTAGCCATTCAAGAAAGAAAGGAGAGAAGCCAAGTTTCTTGAATTTAGC-- 92
consensus_2711#1      GAAGTTTCGGCATCAATGCGAGAGAGTAGTCTGGCTCGTATGTCTGCGTAGGTTTGACCT 180
                      *** *    * * * ** * *** ** *    *    *      * * *   ***  *  

consensus_2711#0      ---AATGAGCAGAGAATGGGGGATTTTATCAAACG--CAGCTTTGAAATCGGTATACACA 147
consensus_2711#1      TTTAATCCACAAATAAATACTAAACACTTGAAATGGTCAGCCTTCATGTTGTGGAATTCT 240
                         ***   ** * **      *     * *** *  **** ** *  * *    *  * 

consensus_2711#0      GCATCAACCTGCATGCCAGAGTCCAGATTTAAGAGTA-CTGAGGAAACAAATTCCATAAG 206
consensus_2711#1      GAATC--TTCACAAGCCCGGTTCACTTTCGCCGCGTAACTAATAATGTCATCTGCTTCGG 298
                      * ***      ** *** *  **    *    * *** ** *  *    *  * * *  *

consensus_2711#0      ATTAGTAGTGGTGGAGCGGCCAGCCATAAAGCCATGTTGATTTGGAATGATCCACGATTT 266
consensus_2711#1      TTTTGACGAGCTAAA---GACAACGGTAACGTC-TGCTAAAAAGTGA-ACTCTGCGACCC 353
                       ** *  * * *  *   * ** *  *** * * ** * *   *  *   **  ***   

consensus_2711#0      CACCATTTCCATTAGAGGTAAACGAATAAC----AGATTCAAAGACTTTGCTGAACGCCG 322
consensus_2711#1      GAAAATTTTCGATAATGTTTGCACAGTTTCCTTGAAAGTTAGCTCCTTCGG-AAGTTTCG 412
                       *  **** *  **  * *     * *  *    * * * *    *** *   *    **

consensus_2711#0      ATAAAATAGATATGCCACGATAATTAGAGATACAACCA--CGATCACCCTTTTTAAAAAC 380
consensus_2711#1      GGAGGATGTAATTGGTGTACTGGTTGTGTGCTTGTGCATCCAACTTCCTCAGTAAAAGCC 472
                        *  **  *  **      *  **           **  * *   **    * ***  *

consensus_2711#0      TGGCCTTATCCATGCTTGTTTCCAAATATTCGGAAAAGTAGCCGTAGACAAAGAAAGATT 440
consensus_2711#1      TGACCTTAGCGACA----TCTTCGAGTTCTTTGGCATCCGACT-CGAACAAATCTTCATA 527
                      ** ***** * *      * * * * *  *  *  *     *     *****     ** 

consensus_2711#0      AAAAAGGAAAGAAACAGGAAGGGCTAGTGC-TTCACGACAGTGAAAGAGTAAAGCAGCAG 499
consensus_2711#1      ACGTCGAAACCATTTTTGAAAAGTTCCTCCGTTCTCTGGATCGAAAG--TAAACTCGGTC 585
                      *    * **  *     ***  * *  * * *** *   *  *****  ****   *   

consensus_2711#0      GAATACCATCGGGACCCGGCACTGAGGATGGTTTAAGGTTACCTAACGCACGTAAAACAG 559
consensus_2711#1      ATGT-TCATTGCCACGAATCGTTCCGTATTATTTG----TACCCGTTG---ATGTTTCTG 637
                         *  *** *  **    *  *  * **  ***     ****    *    *    * *

consensus_2711#0      AAGCTCTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTC 619
consensus_2711#1      ATAGCTTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTC 697
                      *     ******************************************************

consensus_2711#0      TTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACTACGA 679
consensus_2711#1      TTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACT---- 753
                      ********************************************************    

consensus_2711#0      TGTGTTCAGATTAATAGCTTTATTCCAACTGACTATTCTATAAGGGTATACATGTATACT 739
consensus_2711#1      ------------------------------------------------------------
                                                                                  

consensus_2711#0      ACGATCGTACNATAACTA 757
consensus_2711#1      ------------------
                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)