These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence [TCATTCAATTTAACACAACAAAAACGATTCGATAGAAATGATTGTAGCCATTCAAGAAAGAAAGGAGAGAAGCCAAGTTTCTTGAATTTAGCAATGAGCAGAGAATGGGGGATTTTATCAAACGCAGCTTTGAAATCGGTATACACAGCATCAACCTGCATGCCAGAGTCCAGATTTAAGAGTACTGAGGAAACAAATTCCATAAGATTAGTAGTGGTGGAGCGGCCAGCCATAAAGCCATGTTGATTTGGAATGATCCACGATTTCACCATTTCCATTAGAGGTAAACGAATAACAGATTCAAAGACTTTGCTGAACGCCGATAAAATAGATATGCCACGATAATTAGAGATACAACCACGATCACCCTTTTTAAAAACTGGCCTTATCCATGCTTGTTTCCAAATATTCGGAAAAGTAGCCGTAGACAAAGAAAGATTAAAAAGGAAAGAAACAGGAAGGGCTAGTGCTTCACGACAGTGAAAGAGTAAAGCAGCAGGAATACCATCGGGACCCGGCACTGAGGATGGTTTAAGGTTACCTAACGCACGTAAAACAGAAGCTCTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACTACGATGTGTTCAGATTAATAGCTTTATTCCAACTGACTATTCTATAAGGGTATACATGTATACTACGATCGTACNATAACTA] [+] EMBL BX621696 [TCATTCAATTTAACACAACAAAAACGATTCGATAGAAATGATTGTAGCCATTCAAGAAAGAAAGGAGAGAAGCCAAGTTTCTTGAATTTAGCAATGAGCAGAGAATGGGGGATTTTATCAAACGCAGCTTTGAAATCGGTATACACAGCATCAACCTGCATGCCAGAGTCCAGATTTAAGAGTACTGAGGAAACAAATTCCATAAGATTAGTAGTGGTGGAGCGGCCAGCCATAAAGCCATGTTGATTTGGAATGATCCACGATTTCACCATTTCCATTAGAGGTAAACGAATAACAGATTCAAAGACTTTGCTGAACGCCGATAAAATAGATATGCCACGATAATTAGAGATACAACCACGATCACCCTTTTTAAAAACTGGCCTTATCCATGCTTGTTTCCAAATATTCGGAAAAGTAGCCGTAGACAAAGAAAGATTAAAAAGGAAAGAAACAGGAAGGGCTAGTGCTTCACGACAGTGAAAGAGTAAAGCAGCAGGAATACCATCGGGACCCGGCACTGAGGATGGTTTAAGGTTACCTAACGCACGTAAAACAGAAGCTCTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACTACGATGTGTTCAGATTAATAGCTTTATTCCAACTGACTATTCTATAAGGGTATACATGTATACTACGATCGTACNATAACTA] consensusID : consensus_2711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 753 fasta sequence [GCATCCAGTAAGATTTGAACCGTTCTGGTAATTTGATAACTCTTCGACTTCTTTCCAAAATTGATGATTGCTGCTCTTGCTGTTGAACAACTGGTTCTTTGCAGTGTAATGGGCGCATCTGAAGTTTCGGCATCAATGCGAGAGAGTAGTCTGGCTCGTATGTCTGCGTAGGTTTGACCTTTTAATCCACAAATAAATACTAAACACTTGAAATGGTCAGCCTTCATGTTGTGGAATTCTGAATCTTCACAAGCCCGGTTCACTTTCGCCGCGTAACTAATAATGTCATCTGCTTCGGTTTTGACGAGCTAAAGACAACGGTAACGTCTGCTAAAAAGTGAACTCTGCGACCCGAAAATTTTCGATAATGTTTGCACAGTTTCCTTGAAAGTTAGCTCCTTCGGAAGTTTCGGGAGGATGTAATTGGTGTACTGGTTGTGTGCTTGTGCATCCAACTTCCTCAGTAAAAGCCTGACCTTAGCGACATCTTCGAGTTCTTTGGCATCCGACTCGAACAAATCTTCATAACGTCGAAACCATTTTTGAAAAGTTCCTCCGTTCTCTGGATCGAAAGTAAACTCGGTCATGTTCATTGCCACGAATCGTTCCGTATTATTTGTACCCGTTGATGTTTCTGATAGCTTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACT] [-] EMBL BX627796 [GCATCCAGTAAGATTTGAACCGTTCTGGTAATTTGATAACTCTTCGACTTCTTTCCAAAATTGATGATTGCTGCTCTTGCTGTTGAACAACTGGTTCTTTGCAGTGTAATGGGCGCATCTGAAGTTTCGGCATCAATGCGAGAGAGTAGTCTGGCTCGTATGTCTGCGTAGGTTTGACCTTTTAATCCACAAATAAATACTAAACACTTGAAATGGTCAGCCTTCATGTTGTGGAATTCTGAATCTTCACAAGCCCGGTTCACTTTCGCCGCGTAACTAATAATGTCATCTGCTTCGGTTTTGACGAGCTAAAGACAACGGTAACGTCTGCTAAAAAGTGAACTCTGCGACCCGAAAATTTTCGATAATGTTTGCACAGTTTCCTTGAAAGTTAGCTCCTTCGGAAGTTTCGGGAGGATGTAATTGGTGTACTGGTTGTGTGCTTGTGCATCCAACTTCCTCAGTAAAAGCCTGACCTTAGCGACATCTTCGAGTTCTTTGGCATCCGACTCGAACAAATCTTCATAACGTCGAAACCATTTTTGAAAAGTTCCTCCGTTCTCTGGATCGAAAGTAAACTCGGTCATGTTCATTGCCACGAATCGTTCCGTATTATTTGTACCCGTTGATGTTTCTGATAGCTTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2711#0 ------------------------------------------------------------ consensus_2711#1 GCATCCAGTAAGATTTGAACCGTTCTGGTAATTTGATAACTCTTCGACTTCTTTCCAAAA 60 consensus_2711#0 --------------------------TCATTCAATTTAACACAACAAAAACGATTCGATA 34 consensus_2711#1 TTGATGATTGCTGCTCTTGCTGTTGAACAACTGGTTCTTTGCAGTGTAATGGGCGCATCT 120 ** ** ** ** * * consensus_2711#0 GAAATGATTGTAGCCATTCAAGAAAGAAAGGAGAGAAGCCAAGTTTCTTGAATTTAGC-- 92 consensus_2711#1 GAAGTTTCGGCATCAATGCGAGAGAGTAGTCTGGCTCGTATGTCTGCGTAGGTTTGACCT 180 *** * * * * ** * *** ** * * * * * * *** * consensus_2711#0 ---AATGAGCAGAGAATGGGGGATTTTATCAAACG--CAGCTTTGAAATCGGTATACACA 147 consensus_2711#1 TTTAATCCACAAATAAATACTAAACACTTGAAATGGTCAGCCTTCATGTTGTGGAATTCT 240 *** ** * ** * * *** * **** ** * * * * * consensus_2711#0 GCATCAACCTGCATGCCAGAGTCCAGATTTAAGAGTA-CTGAGGAAACAAATTCCATAAG 206 consensus_2711#1 GAATC--TTCACAAGCCCGGTTCACTTTCGCCGCGTAACTAATAATGTCATCTGCTTCGG 298 * *** ** *** * ** * * *** ** * * * * * * * consensus_2711#0 ATTAGTAGTGGTGGAGCGGCCAGCCATAAAGCCATGTTGATTTGGAATGATCCACGATTT 266 consensus_2711#1 TTTTGACGAGCTAAA---GACAACGGTAACGTC-TGCTAAAAAGTGA-ACTCTGCGACCC 353 ** * * * * * * ** * *** * * ** * * * * ** *** consensus_2711#0 CACCATTTCCATTAGAGGTAAACGAATAAC----AGATTCAAAGACTTTGCTGAACGCCG 322 consensus_2711#1 GAAAATTTTCGATAATGTTTGCACAGTTTCCTTGAAAGTTAGCTCCTTCGG-AAGTTTCG 412 * **** * ** * * * * * * * * * *** * * ** consensus_2711#0 ATAAAATAGATATGCCACGATAATTAGAGATACAACCA--CGATCACCCTTTTTAAAAAC 380 consensus_2711#1 GGAGGATGTAATTGGTGTACTGGTTGTGTGCTTGTGCATCCAACTTCCTCAGTAAAAGCC 472 * ** * ** * ** ** * * ** * *** * consensus_2711#0 TGGCCTTATCCATGCTTGTTTCCAAATATTCGGAAAAGTAGCCGTAGACAAAGAAAGATT 440 consensus_2711#1 TGACCTTAGCGACA----TCTTCGAGTTCTTTGGCATCCGACT-CGAACAAATCTTCATA 527 ** ***** * * * * * * * * * * * ***** ** consensus_2711#0 AAAAAGGAAAGAAACAGGAAGGGCTAGTGC-TTCACGACAGTGAAAGAGTAAAGCAGCAG 499 consensus_2711#1 ACGTCGAAACCATTTTTGAAAAGTTCCTCCGTTCTCTGGATCGAAAG--TAAACTCGGTC 585 * * ** * *** * * * * *** * * ***** **** * consensus_2711#0 GAATACCATCGGGACCCGGCACTGAGGATGGTTTAAGGTTACCTAACGCACGTAAAACAG 559 consensus_2711#1 ATGT-TCATTGCCACGAATCGTTCCGTATTATTTG----TACCCGTTG---ATGTTTCTG 637 * *** * ** * * * ** *** **** * * * * consensus_2711#0 AAGCTCTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTC 619 consensus_2711#1 ATAGCTTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTC 697 * ****************************************************** consensus_2711#0 TTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACTACGA 679 consensus_2711#1 TTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACT---- 753 ******************************************************** consensus_2711#0 TGTGTTCAGATTAATAGCTTTATTCCAACTGACTATTCTATAAGGGTATACATGTATACT 739 consensus_2711#1 ------------------------------------------------------------ consensus_2711#0 ACGATCGTACNATAACTA 757 consensus_2711#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||