These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [TCTTCAGCTGGGGCATTATGAACACGGCCTACGAGCAGCTGAAAAAGGGGTTCTATTAAGGGGTCGGTGGTGGTGGTGGCCCCATGAGTCAAAGGCCCCCGGGAGTATAGAAGGGCCGGTATTATAGTACGTTTGTAAATAGATTGATCGTTTAGGAAGGGCGTTACACAAGCGGTCTGCACAACTTTGGCACGCACGCAGTCACTGAGGGCGGATGGAACGGACGGTGTGGCCACATCTCTCCTGCCATCTCTTTTATTTAGGTTAGCTTTGCCGGCATTAGCCAGACAAGGCAAACGAGCATGAGATTTAAGTATACCCCATCAATCGTGTGTGCGTTTGTGTGTGTGTGTGCTATACCTTCTCTCCTCATTTTGCATTTAATGCGCTCCTCATCCTGGATGCTCCGTGTACAGATGAAACTGCTGTTTTCATCGCTTTAAGTGCTTAAAGTATTCATCTCACCTCGTGTTGTTGGTTCTCGCCCGTTTGTAAATATATATATCGATATGTATATACTTGTCCGCATCCCGCACACAGTTCACTGTAGGGCAATACATAGCCCTACACGGCCCAGAAGCCCCCCCCCCCCTACTCCT] [+] EMBL BX608421 [TCTTCAGCTGGGGCATTATGAACACGGCCTACGAGCAGCTGAAAAAGGGGTTCTATTAAGGGGTCGGTGGTGGTGGTGGCCCCATGAGTCAAAGGCCCCCGGGAGTATAGAAGGGCCGGTATTATAGTACGTTTGTAAATAGATTGATCGTTTAGGAAGGGCGTTACACAAGCGGTCTGCACAACTTTGGCACGCACGCAGTCACTGAGGGCGGATGGAACGGACGGTGTGGCCACATCTCTCCTGCCATCTCTTTTATTTAGGTTAGCTTTGCCGGCATTAGCCAGACAAGGCAAACGAGCATGAGATTTAAGTATACCCCATCAATCGTGTGTGCGTTTGTGTGTGTGTGTGCTATACCTTCTCTCCTCATTTTGCATTTAATGCGCTCCTCATCCTGGATGCTCCGTGTACAGATGAAACTGCTGTTTTCATCGCTTTAAGTGCTTAAAGTATTCATCTCACCTCGTGTTGTTGGTTCTCGCCCGTTTGTAAATATATATATCGATATGTATATACTTGTCCGCATCCCGCACACAGTTCACTGTAGGGCAATACATAGCCCTACACGGCCCAGAAGCCCCCCCCCCCCTACTCCT] consensusID : consensus_2735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [ATCGGCACGAGGATCATTCTGGAAAACGGTATTAAAGNAGTTTGTACAGGGCTAGTGCCGGTACTTTGGCGCAACGGACCTTCGAACGCTATGTTTTTCGTGCTAAGAGAGGAAGCCGACAGCCGTCTACCGAAACGGGTTTCGATACTGTCGCAACGGACGCAAGAGTTTGTGGCGGGTGCCTGCATCGGTGCATTTATCAGCTCGCTGTTCTACCCGCTGAACGTGGTCAAGGTGACGATGCAGTGCCGGGTCGGCGGACCGTACGACAGTATGTGGACAGCGCTGCAGCAGGTGTACAATGATCGCGATCGAAAGCTGCGAAATGTGTACAAAGGCGTCAGCATGAACTGCACACGTGCGTTCTTCAGCTGGGGCATTATGAACACGGCCTAC] [+] EMBL BX619205 [ATCGGCACGAGGATCATTCTGGAAAACGGTATTAAAGNAGTTTGTACAGGGCTAGTGCCGGTACTTTGGCGCAACGGACCTTCGAACGCTATGTTTTTCGTGCTAAGAGAGGAAGCCGACAGCCGTCTACCGAAACGGGTTTCGATACTGTCGCAACGGACGCAAGAGTTTGTGGCGGGTGCCTGCATCGGTGCATTTATCAGCTCGCTGTTCTACCCGCTGAACGTGGTCAAGGTGACGATGCAGTGCCGGGTCGGCGGACCGTACGACAGTATGTGGACAGCGCTGCAGCAGGTGTACAATGATCGCGATCGAAAGCTGCGAAATGTGTACAAAGGCGTCAGCATGAACTGCACACGTGCGTTCTTCAGCTGGGGCATTATGAACACGGCCTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2735#0 TCTTCAGCTGGGGCATTATGAACACGGCCTACGAGCAGCTGAAAAAGGGGTTCTATTAAG 60 consensus_2735#1 ------------------------------------------------------------ consensus_2735#0 GGGTCGGTGGTGGTGGTGGCCCCATGAGTCAAAGGCCCCCGGGAGTATAGAAGGGCCGGT 120 consensus_2735#1 ------------------------------------------------------------ consensus_2735#0 ATTATAGTACGTTTGTAAATAGATTGATCGTTTAGGAAGGGCGTTACACAAGCGGTCTGC 180 consensus_2735#1 --------------ATCGGCACGAGGATCATTCTGGAAAA-CGGTATTAAAGNAGTTTGT 45 * * **** ** **** ** ** *** ** ** consensus_2735#0 ACAACTTTGGCACGCACGCAGTCACTGAGGGCGGATGGAACGGACGGTGTGGCCACATCT 240 consensus_2735#1 ACAGGGCTAGT------GCCGGTACT-----TTGGCGCAACGGAC------------CTT 82 *** * * ** * *** * * ******* * consensus_2735#0 CTCCTGCCATCTCTTTTATTTAGGTTAGCTTTGCCGGCATTAGCCAGACAAGGCAAACGA 300 consensus_2735#1 CGAACGCTATGTTTTTCGTGCTAAGAGAGGAAGCCGACAGCCGTCTACCGAAACGGGTTT 142 * ** ** * *** * **** ** * * * * * consensus_2735#0 GCATGAGATTTAAGTATACCCCATCAATCGTGTGTGCGTTTGTGTGTGTGTGTGCTATAC 360 consensus_2735#1 CGATACTGTCGCAACGGACGCAAGAGTTTGTG-GCGGGTGCCTGCATCGGTGCATT-TAT 200 ** * * ** * * * *** * * ** ** * *** * ** consensus_2735#0 CTTCTCTCCTCATTTTGCATTTAATGCGCTCCTCATCCTGGATGCTCCGTGTACAGATGA 420 consensus_2735#1 CAGCTCGCTGTTCTACCCGCTGAACGTGGTCA-------AGGTGA-CGATGCAGTGCCGG 252 * *** * * * * ** * * ** * ** * ** * * * consensus_2735#0 AACTGCTGTTTTCATCGCTTTAAGTGCTTAAAGTATTCATCTCACCTCGTGTTGTTGGTT 480 consensus_2735#1 GTCGGCGGACCGTACGACAGTATGTGGACAGCGC-TGCAGCAGGTGT-ACAATGATCGCG 310 * ** * * * ** *** * * * ** * * ** * * consensus_2735#0 CTCGCCCGTTTGTAAATATATATATCGATATGTATATACTTGTCCGCATCCCGCACACAG 540 consensus_2735#1 ATCGAAAGCTGCGAAATGTGTACAAAGGCGTCAGCATG---AACTGCA-CACGTGCGTTC 366 *** * * **** * ** * * * ** * *** * ** * consensus_2735#0 TTCACTGTAGGGCAATACATAGCCCTACACGGCCCAGAAGCCCCCCCCCCCCTACTCCT 599 consensus_2735#1 TTCAGC-TGGGGCATTATGAA------CACGGCCTAC---------------------- 396 **** * ***** ** * ******* * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||