cluster # 2752

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Anopheles gambiae
cluster # 2752 cluster # 2752 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2752#0 length = 625 sequences # 1

consensus_2752#1 length = 269 sequences # 1

consensusID : consensus_2752#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CCGCCCACGCGTCCGGCAATTTGTAAATAGATAGTTTCTTATCGGATCTTTATCCCATAAATCCAAGGTTCTCGAAGAAAAAAACCTCTTCGGTATCCCGTTGCTGGCAGTATAAAGATAAAACGTTGTAGGTTTGCCAGTAATTGGCAATGTTCAGCAATATCGAAAAGTGCAATATGGAGCAGACAACGCAAACAAAAAACAGTTCCGAATCCGAACTTCGGGAAGACGTGCCCAACGATAACCCAGAGACCTACTGTCGATTGTGTTTCTCCGAAACCAATGTTCATCCGCTCTTCCCACAGAACGGGGGACTGATACGTGAAATGACCGAAAAGATACGGACCTGCGCCGGTATACATATTAGTGTGCGGGACGACTATCCAGCCGGACTATGTTTTGCGTGCCTGTCGATATTAGATGAGATTCATCAGTTTCAACAACGAAGTAAACATTGTGACGAAATCATTCGTACCAAGCGCGGTCTGCTGGAGCAGATTACAGTGAAAGTAGAAATGACGGAAGAAGATGGTGTACATTTTATCCCCCCTGGCGGAGGAAGCTGCACCGGCCTAGGAGCTAGTGAAGACTACGCAAATGATGATTGTCTTTACGGAGAGCAGTA]

[+] EMBL BM639104             [CCGCCCACGCGTCCGGCAATTTGTAAATAGATAGTTTCTTATCGGATCTTTATCCCATAAATCCAAGGTTCTCGAAGAAAAAAACCTCTTCGGTATCCCGTTGCTGGCAGTATAAAGATAAAACGTTGTAGGTTTGCCAGTAATTGGCAATGTTCAGCAATATCGAAAAGTGCAATATGGAGCAGACAACGCAAACAAAAAACAGTTCCGAATCCGAACTTCGGGAAGACGTGCCCAACGATAACCCAGAGACCTACTGTCGATTGTGTTTCTCCGAAACCAATGTTCATCCGCTCTTCCCACAGAACGGGGGACTGATACGTGAAATGACCGAAAAGATACGGACCTGCGCCGGTATACATATTAGTGTGCGGGACGACTATCCAGCCGGACTATGTTTTGCGTGCCTGTCGATATTAGATGAGATTCATCAGTTTCAACAACGAAGTAAACATTGTGACGAAATCATTCGTACCAAGCGCGGTCTGCTGGAGCAGATTACAGTGAAAGTAGAAATGACGGAAGAAGATGGTGTACATTTTATCCCCCCTGGCGGAGGAAGCTGCACCGGCCTAGGAGCTAGTGAAGACTACGCAAATGATGATTGTCTTTACGGAGAGCAGTA]




>consensus_2752#0
CCGCCCACGCGTCCGGCAATTTGTAAATAGATAGTTTCTTATCGGATCTTTATCCCATAA
ATCCAAGGTTCTCGAAGAAAAAAACCTCTTCGGTATCCCGTTGCTGGCAGTATAAAGATA
AAACGTTGTAGGTTTGCCAGTAATTGGCAATGTTCAGCAATATCGAAAAGTGCAATATGG
AGCAGACAACGCAAACAAAAAACAGTTCCGAATCCGAACTTCGGGAAGACGTGCCCAACG
ATAACCCAGAGACCTACTGTCGATTGTGTTTCTCCGAAACCAATGTTCATCCGCTCTTCC
CACAGAACGGGGGACTGATACGTGAAATGACCGAAAAGATACGGACCTGCGCCGGTATAC
ATATTAGTGTGCGGGACGACTATCCAGCCGGACTATGTTTTGCGTGCCTGTCGATATTAG
ATGAGATTCATCAGTTTCAACAACGAAGTAAACATTGTGACGAAATCATTCGTACCAAGC
GCGGTCTGCTGGAGCAGATTACAGTGAAAGTAGAAATGACGGAAGAAGATGGTGTACATT
TTATCCCCCCTGGCGGAGGAAGCTGCACCGGCCTAGGAGCTAGTGAAGACTACGCAAATG
ATGATTGTCTTTACGGAGAGCAGTA

consensusID : consensus_2752#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [AGCAGAATCNCCAGAGNTGNATAACAATTATCGCTACTTAACATGCAATTTGTAAATAGATAGTTTCTTATCGGATCTTTATCCCATAAATCCAAGGTTCTCGAAGAAAAAAACCTCTTCGGTATCCCGTTGCTGGCAGTATAAAGATTAAACGTTGTAGGTTTGCCAGTAATTGGCAATGTTCAGCAATATCGAAAAGTGCAATATGGAGCAGACAACGCAAACAAAAAACAGTGTCCGAATCCGAACTTCGGGAAGACGTGCCCAAC]

[+] EMBL BX466208             [AGCAGAATCNCCAGAGNTGNATAACAATTATCGCTACTTAACATGCAATTTGTAAATAGATAGTTTCTTATCGGATCTTTATCCCATAAATCCAAGGTTCTCGAAGAAAAAAACCTCTTCGGTATCCCGTTGCTGGCAGTATAAAGATTAAACGTTGTAGGTTTGCCAGTAATTGGCAATGTTCAGCAATATCGAAAAGTGCAATATGGAGCAGACAACGCAAACAAAAAACAGTGTCCGAATCCGAACTTCGGGAAGACGTGCCCAAC]




>consensus_2752#1
AGCAGAATCNCCAGAGNTGNATAACAATTATCGCTACTTAACATGCAATTTGTAAATAGA
TAGTTTCTTATCGGATCTTTATCCCATAAATCCAAGGTTCTCGAAGAAAAAAACCTCTTC
GGTATCCCGTTGCTGGCAGTATAAAGATTAAACGTTGTAGGTTTGCCAGTAATTGGCAAT
GTTCAGCAATATCGAAAAGTGCAATATGGAGCAGACAACGCAAACAAAAAACAGTGTCCG
AATCCGAACTTCGGGAAGACGTGCCCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2752#0      ------------------------------CCGCCCACGCGTCCGGCAATTTGTAAATAG 30
consensus_2752#1      AGCAGAATCNCCAGAGNTGNATAACAATTATCGCT-ACTTAACATGCAATTTGTAAATAG 59
                                                     ***  **    *  ***************

consensus_2752#0      ATAGTTTCTTATCGGATCTTTATCCCATAAATCCAAGGTTCTCGAAGAAAAAAACCTCTT 90
consensus_2752#1      ATAGTTTCTTATCGGATCTTTATCCCATAAATCCAAGGTTCTCGAAGAAAAAAACCTCTT 119
                      ************************************************************

consensus_2752#0      CGGTATCCCGTTGCTGGCAGTATAAAGATAAAACGTTGTAGGTTTGCCAGTAATTGGCAA 150
consensus_2752#1      CGGTATCCCGTTGCTGGCAGTATAAAGATTAAACGTTGTAGGTTTGCCAGTAATTGGCAA 179
                      ***************************** ******************************

consensus_2752#0      TGTTCAGCAATATCGAAAAGTGCAATATGGAGCAGACAACGCAAACAAAAAACAGT-TCC 209
consensus_2752#1      TGTTCAGCAATATCGAAAAGTGCAATATGGAGCAGACAACGCAAACAAAAAACAGTGTCC 239
                      ******************************************************** ***

consensus_2752#0      GAATCCGAACTTCGGGAAGACGTGCCCAACGATAACCCAGAGACCTACTGTCGATTGTGT 269
consensus_2752#1      GAATCCGAACTTCGGGAAGACGTGCCCAAC------------------------------ 269
                      ******************************                              

consensus_2752#0      TTCTCCGAAACCAATGTTCATCCGCTCTTCCCACAGAACGGGGGACTGATACGTGAAATG 329
consensus_2752#1      ------------------------------------------------------------
                                                                                  

consensus_2752#0      ACCGAAAAGATACGGACCTGCGCCGGTATACATATTAGTGTGCGGGACGACTATCCAGCC 389
consensus_2752#1      ------------------------------------------------------------
                                                                                  

consensus_2752#0      GGACTATGTTTTGCGTGCCTGTCGATATTAGATGAGATTCATCAGTTTCAACAACGAAGT 449
consensus_2752#1      ------------------------------------------------------------
                                                                                  

consensus_2752#0      AAACATTGTGACGAAATCATTCGTACCAAGCGCGGTCTGCTGGAGCAGATTACAGTGAAA 509
consensus_2752#1      ------------------------------------------------------------
                                                                                  

consensus_2752#0      GTAGAAATGACGGAAGAAGATGGTGTACATTTTATCCCCCCTGGCGGAGGAAGCTGCACC 569
consensus_2752#1      ------------------------------------------------------------
                                                                                  

consensus_2752#0      GGCCTAGGAGCTAGTGAAGACTACGCAAATGATGATTGTCTTTACGGAGAGCAGTA 625
consensus_2752#1      --------------------------------------------------------