These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGCCCACGCGTCCGACTGTAGGCACTTTTGGGCCACTTATCTCTCGGCAGCTGTTGTTTCGGTGAATTAGTAATAGGCAGATAATAGACATTATTGTACGTTCCCGAAAAGTTGGTGATCTCGCACACGGAATGTTGACGGGCGAAACGGTACTGCTCGTCCAGATCGCTCTGGTGGTGATCGCTCTGGTACCGCTTGCAAAATGGTTCAAGAAGCGGCTCAACTTGCACGATGTGATCAACAAAATTCCCGGCCCCAAGGCGTACCCGATCATCGGAACGATGTACACCTTCGTTGGGAAGAAGTCGGAAGAAATCTTCTACATCATTGACAAACGCACCCGTGACTACCCGGAGATTCATCGCATTTGGAACGGGTTCGTGCCGGAGGTGCGCATCAACAAGGCGGAGTACGTGGAGAAGCTGCTCTCCTCCAGCCGGAACATTGAAAAGTCGATGACGTACAAATTCACCCGGGACTGGCTCGGTCAGGGTTTGTTAACGTCAAAAGATGATCGATGGTTTCAGCACCGGCGGCTCATAACGCCCACCTTTCACTTCAACATCCTGGACGGCTTCTGCGAGGTGTTTGCCGAGCATGGGGCACTGCTGGTGGAGAAGCTGGCGGCAGCCCGGGGCCGCCACCAGTGCCAGCCAGCCGATCAACGT] [+] EMBL BM639147 [CCGCCCACGCGTCCGACTGTAGGCACTTTTGGGCCACTTATCTCTCGGCAGCTGTTGTTTCGGTGAATTAGTAATAGGCAGATAATAGACATTATTGTACGTTCCCGAAAAGTTGGTGATCTCGCACACGGAATGTTGACGGGCGAAACGGTACTGCTCGTCCAGATCGCTCTGGTGGTGATCGCTCTGGTACCGCTTGCAAAATGGTTCAAGAAGCGGCTCAACTTGCACGATGTGATCAACAAAATTCCCGGCCCCAAGGCGTACCCGATCATCGGAACGATGTACACCTTCGTTGGGAAGAAGTCGGAAGAAATCTTCTACATCATTGACAAACGCACCCGTGACTACCCGGAGATTCATCGCATTTGGAACGGGTTCGTGCCGGAGGTGCGCATCAACAAGGCGGAGTACGTGGAGAAGCTGCTCTCCTCCAGCCGGAACATTGAAAAGTCGATGACGTACAAATTCACCCGGGACTGGCTCGGTCAGGGTTTGTTAACGTCAAAAGATGATCGATGGTTTCAGCACCGGCGGCTCATAACGCCCACCTTTCACTTCAACATCCTGGACGGCTTCTGCGAGGTGTTTGCCGAGCATGGGGCACTGCTGGTGGAGAAGCTGGCGGCAGCCCGGGGCCGCCACCAGTGCCAGCCAGCCGATCAACGT] consensusID : consensus_2756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGGAGCCTTGGAACTGTAGGCACTTTTGGGCCACTTATCTCTCGGCAGCTGTTGTTTCGGTGAATTAGTAATAGGCAGATAATAGACATTATTGTACGTTCCCGAAAAGTTGGTGATCTCGCACACGGAATGTTGACGGGCGAAACGGTACTGCTCGTCCAGATCGCTCTGGTGGTGATCGCTCTGGTACCGCTTGCAAAATGGTTCAAGAAGCGGCTCAACTTGCACGATGTGATCAACAAAATTCCCGGCCCCAAGGCGTACCCGATCATCGGAACGATGTACACCTTCGTTGGGAAGAAGTCGGAAGAAATCTTCTACATCATTGACAAACGCACCCGTGACTACCCGGAGATTCATCGCATTTGGAACGGGTTCGTGCCGGAGGTGCGCATCAACAAGGCGGAGTACGTGGAGAAGCTGCTCTCCTCCAGCCGGAACATTGAAAAGTCGATGACGTACAAATTCACCCGGGACTGGCTCGGTCAGGGTTTGTTAACGTCAAAAGATGATCGATGGTTTCAGCACCGGCGGCTCATAACGCCCACCTTTCACTTCAACATCCTGGACGGCTTCTGCGAGGTGTTTGCCGAGCATGGGGCACTGCTGGTGGAAGAAGCTGGCGGCAGCCCGGGCCGCCACCAGTGCCAGCCAGCCGATCAACGTG] [+] EMBL BM648861 [CCGGAGCCTTGGAACTGTAGGCACTTTTGGGCCACTTATCTCTCGGCAGCTGTTGTTTCGGTGAATTAGTAATAGGCAGATAATAGACATTATTGTACGTTCCCGAAAAGTTGGTGATCTCGCACACGGAATGTTGACGGGCGAAACGGTACTGCTCGTCCAGATCGCTCTGGTGGTGATCGCTCTGGTACCGCTTGCAAAATGGTTCAAGAAGCGGCTCAACTTGCACGATGTGATCAACAAAATTCCCGGCCCCAAGGCGTACCCGATCATCGGAACGATGTACACCTTCGTTGGGAAGAAGTCGGAAGAAATCTTCTACATCATTGACAAACGCACCCGTGACTACCCGGAGATTCATCGCATTTGGAACGGGTTCGTGCCGGAGGTGCGCATCAACAAGGCGGAGTACGTGGAGAAGCTGCTCTCCTCCAGCCGGAACATTGAAAAGTCGATGACGTACAAATTCACCCGGGACTGGCTCGGTCAGGGTTTGTTAACGTCAAAAGATGATCGATGGTTTCAGCACCGGCGGCTCATAACGCCCACCTTTCACTTCAACATCCTGGACGGCTTCTGCGAGGTGTTTGCCGAGCATGGGGCACTGCTGGTGGAAGAAGCTGGCGGCAGCCCGGGCCGCCACCAGTGCCAGCCAGCCGATCAACGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2756#0 CCGCCCACGCGTCCGA-CTGTAGGCACTTTTGGGCCACTTATCTCTCGGCAGCTGTTGTT 59 consensus_2756#1 ---CCGGAGCCTTGGAACTGTAGGCACTTTTGGGCCACTTATCTCTCGGCAGCTGTTGTT 57 ** ** * ** ******************************************* consensus_2756#0 TCGGTGAATTAGTAATAGGCAGATAATAGACATTATTGTACGTTCCCGAAAAGTTGGTGA 119 consensus_2756#1 TCGGTGAATTAGTAATAGGCAGATAATAGACATTATTGTACGTTCCCGAAAAGTTGGTGA 117 ************************************************************ consensus_2756#0 TCTCGCACACGGAATGTTGACGGGCGAAACGGTACTGCTCGTCCAGATCGCTCTGGTGGT 179 consensus_2756#1 TCTCGCACACGGAATGTTGACGGGCGAAACGGTACTGCTCGTCCAGATCGCTCTGGTGGT 177 ************************************************************ consensus_2756#0 GATCGCTCTGGTACCGCTTGCAAAATGGTTCAAGAAGCGGCTCAACTTGCACGATGTGAT 239 consensus_2756#1 GATCGCTCTGGTACCGCTTGCAAAATGGTTCAAGAAGCGGCTCAACTTGCACGATGTGAT 237 ************************************************************ consensus_2756#0 CAACAAAATTCCCGGCCCCAAGGCGTACCCGATCATCGGAACGATGTACACCTTCGTTGG 299 consensus_2756#1 CAACAAAATTCCCGGCCCCAAGGCGTACCCGATCATCGGAACGATGTACACCTTCGTTGG 297 ************************************************************ consensus_2756#0 GAAGAAGTCGGAAGAAATCTTCTACATCATTGACAAACGCACCCGTGACTACCCGGAGAT 359 consensus_2756#1 GAAGAAGTCGGAAGAAATCTTCTACATCATTGACAAACGCACCCGTGACTACCCGGAGAT 357 ************************************************************ consensus_2756#0 TCATCGCATTTGGAACGGGTTCGTGCCGGAGGTGCGCATCAACAAGGCGGAGTACGTGGA 419 consensus_2756#1 TCATCGCATTTGGAACGGGTTCGTGCCGGAGGTGCGCATCAACAAGGCGGAGTACGTGGA 417 ************************************************************ consensus_2756#0 GAAGCTGCTCTCCTCCAGCCGGAACATTGAAAAGTCGATGACGTACAAATTCACCCGGGA 479 consensus_2756#1 GAAGCTGCTCTCCTCCAGCCGGAACATTGAAAAGTCGATGACGTACAAATTCACCCGGGA 477 ************************************************************ consensus_2756#0 CTGGCTCGGTCAGGGTTTGTTAACGTCAAAAGATGATCGATGGTTTCAGCACCGGCGGCT 539 consensus_2756#1 CTGGCTCGGTCAGGGTTTGTTAACGTCAAAAGATGATCGATGGTTTCAGCACCGGCGGCT 537 ************************************************************ consensus_2756#0 CATAACGCCCACCTTTCACTTCAACATCCTGGACGGCTTCTGCGAGGTGTTTGCCGAGCA 599 consensus_2756#1 CATAACGCCCACCTTTCACTTCAACATCCTGGACGGCTTCTGCGAGGTGTTTGCCGAGCA 597 ************************************************************ consensus_2756#0 TGGGGCACTGCTGGTGGA-GAAGCTGGCGGCAGCCCGGGGCCGCCACCAGTGCCAGCCAG 658 consensus_2756#1 TGGGGCACTGCTGGTGGAAGAAGCTGGCGGCAGCCCGGG-CCGCCACCAGTGCCAGCCAG 656 ****************** ******************** ******************** consensus_2756#0 CCGATCAACGT- 669 consensus_2756#1 CCGATCAACGTG 668 *********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||