These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 846 fasta sequence [GAGGCAGAATCGCACGAGGGCTTAGCGAAGAAAAAAAAACACACACACACGTAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACGATAGTTAGGAAGCAAAGCAACTACATCAACAACAAAAAGATCGCAAGACAGTGGTTGTTACAGATGCAAAAGATTTCAAGCTTACGGGGAAACAGCACCATGTAGAAAAAAAAGCCACTAAGAGACTGGTGGAAGATAGAGCTGGCGGAAAGATATTGTGATATCGCCATGGTAGCTGCCGTGGCTGATAGCTGGCATCGAAATAGGGAAAGACGCGCTTGTAGGCCAATATACCCGCGAGTCAACATTCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATCGATCGATCGAATGTGTAAAACTTTGAATATGTTTTTATTTGTTGTTTATCCCAAATTGATCTTGCTTAGAGATCTTATATTTTACAATCCATCTCTCCTCCTCTCTTCTTGTATGCGTACACAATCACACACGCTTTTAATTACCGGACGTAAAGGAAAGGAATTGAGTTAGTTTTCAGCAAGCAAAGCACGCCAGAGGAGAGACAGTGCCAGAAAATCGAGGTTTTTTGCCAGTAGGCGCTCAAAAACGCTCCGTCGGCTCCGCAGGAAGATCATTTCTTAATCTATTAACGTTTATGGCTAATTAAGCGCAACACGCAGTTAGACCAAAATTCTCTNGGTGTTAGGGCCACAAACGTTACAGCCTTAAAAGGGGGATCCCCCTGACTTACGGACACACAAGCCACTAACGGGCCACAACGGGCCAAACCCGGAACCTTCCAATTG] [+] EMBL BX467621 [GAGGCAGAATCGCACGAGGGCTTAGCGAAGAAAAAAAAACACACACACACGTAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACGATAGTTAGGAAGCAAAGCAACTACATCAACAACAAAAAGATCGCAAGACAGTGGTTGTTACAGATGCAAAAGATTTCAAGCTTACGGGGAAACAGCACCATGTAGAAAAAAAAGCCACTAAGAGACTGGTGGAAGATAGAGCTGGCGGAAAGATATTGTGATATCGCCATGGTAGCTGCCGTGGCTGATAGCTGGCATCGAAATAGGGAAAGACGCGCTTGTAGGCCAATATACCCGCGAGTCAACATTCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATCGATCGATCGAATGTGTAAAACTTTGAATATGTTTTTATTTGTTGTTTATCCCAAATTGATCTTGCTTAGAGATCTTATATTTTACAATCCATCTCTCCTCCTCTCTTCTTGTATGCGTACACAATCACACACGCTTTTAATTACCGGACGTAAAGGAAAGGAATTGAGTTAGTTTTCAGCAAGCAAAGCACGCCAGAGGAGAGACAGTGCCAGAAAATCGAGGTTTTTTGCCAGTAGGCGCTCAAAAACGCTCCGTCGGCTCCGCAGGAAGATCATTTCTTAATCTATTAACGTTTATGGCTAATTAAGCGCAACACGCAGTTAGACCAAAATTCTCTNGGTGTTAGGGCCACAAACGTTACAGCCTTAAAAGGGGGATCCCCCTGACTTACGGACACACAAGCCACTAACGGGCCACAACGGGCCAAACCCGGAACCTTCCAATTG] consensusID : consensus_276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence [GCAGAATCGCCCACGAGGTTGACATATATTGCAAGGCTGTTAACTAGTGCTTAGCGAAGAAAAAAAAACACCCACACACATAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACGATAGTTAGGAAGCAAAGCAACTACGTCAACCACAAAAAGAGCGCAAGACAGTGGTTGTTACAGATGGAAAAGATTTCAAGCTTACGGGGAAACAGCACACCATGTAGAAAAAAGCCACTAAGAGACTGGTGGAAGATAGAGCTGGCGGAANAGATATTCTGATATCGCCATGTTAGCTGCCGTAGCTGATAGCTGGCATCGAAATAGGGAAAGACGATTCCGGTTGTAGTTGTCGCATTTGTGTAGCATCTTTGAAACCTCAACGCGCGTGTAGTCGCGATATACCCGACGAGTCAACATTCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATCGATCGATCGAATGTGTCGAAACTTTGAAAATGTTGCTATATCGTAGGTTATATCTCAAAGCGATCTTACTTAGAGATCTTATATTTTACAATCCATCTCTCTTCCTCCTCTCTTCTTGTATGCGTACACNAATNCCCACACGCTTTTAACTTACCCGGACGTANAAGGACAGGAATTCAAGGTTACATNGNAACCAGAACAACCATCAGGCAANAAAACANGGCCAGAGGCGAGACACGTGCCAGAAAACATCGAGGGTCNNTGNCAGGTAAGGCGGACAACAAACGCTCCGGACACAGGACTCCGCAA] [+] EMBL BX467240 [GCAGAATCGCCCACGAGGTTGACATATATTGCAAGGCTGTTAACTAGTGCTTAGCGAAGAAAAAAAAACACCCACACACATAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACGATAGTTAGGAAGCAAAGCAACTACGTCAACCACAAAAAGAGCGCAAGACAGTGGTTGTTACAGATGGAAAAGATTTCAAGCTTACGGGGAAACAGCACACCATGTAGAAAAAAGCCACTAAGAGACTGGTGGAAGATAGAGCTGGCGGAANAGATATTCTGATATCGCCATGTTAGCTGCCGTAGCTGATAGCTGGCATCGAAATAGGGAAAGACGATTCCGGTTGTAGTTGTCGCATTTGTGTAGCATCTTTGAAACCTCAACGCGCGTGTAGTCGCGATATACCCGACGAGTCAACATTCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATCGATCGATCGAATGTGTCGAAACTTTGAAAATGTTGCTATATCGTAGGTTATATCTCAAAGCGATCTTACTTAGAGATCTTATATTTTACAATCCATCTCTCTTCCTCCTCTCTTCTTGTATGCGTACACNAATNCCCACACGCTTTTAACTTACCCGGACGTANAAGGACAGGAATTCAAGGTTACATNGNAACCAGAACAACCATCAGGCAANAAAACANGGCCAGAGGCGAGACACGTGCCAGAAAACATCGAGGGTCNNTGNCAGGTAAGGCGGACAACAAACGCTCCGGACACAGGACTCCGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_276#0 ---------------------------GAGGCAGAATCGC--ACGAGGGCTTAGCGAAGA 31 consensus_276#1 GCAGAATCGCCCACGAGGTTGACATATATTGCAAGGCTGTTAACTAGTGCTTAGCGAAGA 60 *** * ** ** ************ consensus_276#0 AAAAAAAACACACACACACGTAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACG 91 consensus_276#1 AAAAAAAACACCCACACACATAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACG 120 *********** ******* **************************************** consensus_276#0 ATAGTTAGGAAGCAAAGCAACTACATCAACAACAAAAAGATCGCAAGACAGTGGTTGTTA 151 consensus_276#1 ATAGTTAGGAAGCAAAGCAACTACGTCAACCACAAAAAGAGCGCAAGACAGTGGTTGTTA 180 ************************ ***** ********* ******************* consensus_276#0 CAGATGCAAAAGATTTCAAGCTTACGGGGAAACAGCACCATGTAGAAAAAAAAGCCACTA 211 consensus_276#1 CAGATGGAAAAGATTTCAAGCTTACGGGGAAACAGCACACCATGTAGAAAAAAGCCACTA 240 ****** ******************************* * * ************* consensus_276#0 AGAGACTGGTGGAAGATAGAGCTGGCGGAAA-GATATTGTGATATCGCCATGGTAGCTGC 270 consensus_276#1 AGAGACTGGTGGAAGATAGAGCTGGCGGAANAGATATTCTGATATCGCCATGTTAGCTGC 300 ****************************** ****** ************* ******* consensus_276#0 CGTGGCTGATAGCTGGCATCGAAATAGGGAAAGACG------------------------ 306 consensus_276#1 CGTAGCTGATAGCTGGCATCGAAATAGGGAAAGACGATTCCGGTTGTAGTTGTCGCATTT 360 *** ******************************** consensus_276#0 -------------------------CGCTTGTAGGC-CAATATACCCG-CGAGTCAACAT 339 consensus_276#1 GTGTAGCATCTTTGAAACCTCAACGCGCGTGTAGTCGCGATATACCCGACGAGTCAACAT 420 *** ***** * * ********* *********** consensus_276#0 TCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATC 399 consensus_276#1 TCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATC 480 ************************************************************ consensus_276#0 GATCGATCGAATGTGT-AAAACTTTGAATATGTTTTTAT-TTGTTGTTTAT--CCCAAAT 455 consensus_276#1 GATCGATCGAATGTGTCGAAACTTTGAAAATGTTGCTATATCGTAGGTTATATCTCAAAG 540 **************** ********** ***** *** * ** * **** * **** consensus_276#0 TGATCTTGCTTAGAGATCTTATATTTTACAATCCATCTCTC---CTCCTCTCTTCTTGTA 512 consensus_276#1 CGATCTTACTTAGAGATCTTATATTTTACAATCCATCTCTCTTCCTCCTCTCTTCTTGTA 600 ****** ********************************* **************** consensus_276#0 TGCGTACACAA--TCACACACGCTTTTAATTA--CCGGACGTAAAGGAA-AGGAATTGA- 566 consensus_276#1 TGCGTACACNAATNCCCACACGCTTTTAACTTACCCGGACGTANAAGGACAGGAATTCAA 660 ********* * * ************* * ********* * * * ******* * consensus_276#0 -GTTAGTTTTCAGCAAGCAAAGCACGCCAGAGGAGAGACAGTGCCAGAAAATCGAGGTTT 625 consensus_276#1 GGTTACATNGNAACCAGAACAACCATCAGGCAANAAAACANGGCCAGAGG--CGAGACAC 718 **** * * * ** * * * * * * *** ****** **** consensus_276#0 TTTGCCAGTAGGCGCTCAAAAACGCTCCGTCGGCTCCGCAGGAAGATCATTTCTTAATCT 685 consensus_276#1 GT-GCCAGAAAACATCGAGGGTCNNT--GNCAGGTAAGGCGGACAACAAACGCTCCGGAC 775 * ***** * * * * * * * * * * *** * * ** consensus_276#0 ATTAACGTTTATGGCTAATTAAGCGCAACACGCAGTTAGACCAAAATTCTCTNGGTGTTA 745 consensus_276#1 ACAGGACTCCGCAA---------------------------------------------- 789 * * consensus_276#0 GGGCCACAAACGTTACAGCCTTAAAAGGGGGATCCCCCTGACTTACGGACACACAAGCCA 805 consensus_276#1 ------------------------------------------------------------ consensus_276#0 CTAACGGGCCACAACGGGCCAAACCCGGAACCTTCCAATTG 846 consensus_276#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||