These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [CCGCGCACCACGAACAGTTGGCTATCCCGCAGCAGCTGCCTACTGAGTATTCTACCAACCTCAACAAAAACCAAATCAACCGAAGATGTTCAAGTCGCACCTGGAAATGATCGGAAGCTACGAGCCCATCAGCAAGAAGGCTCGCTTCTTCAACACCTACCTTAAGTCGCTCAAGGGCTCCCAGGACATCATGGCCAAGGAGAAGCGCAGCTACAGCTCGTCCTTCGAATCGCAGAGCATCTACAGTGACTCGAAATTCGCCTGCGAAAGAGTCAAGTCGCCCGGCTACCACTACAACCCGGTCAGCAAGGACACCTATGGCGTTACGCCGAGAAAGATCAATGCACGCGACTTCACCCGCTAAACATCGTGTAGCAATAATATCTTTTTGTCTTAATGTGTCCCTAAGTTCTTGAACACCACACAAGAAGAGAAAAAACAACACCTAACCTACACATACACACACACATACGTAAAAAGATATACAGCCTAACACCTTTGTTATCTTTGAGACGAGACAACAACAACAACGTTAGAAGGAAGAGAGAGCGAGGAATGCAGCGCGGGGATGTCCCGATGCCGCGTGACTCCTCCAACTGGTCATTATGTCCAACAATCCCACACATAAGGTGTATTTTGTATATAAATAG] [+] EMBL BM645534 [CCGCGCACCACGAACAGTTGGCTATCCCGCAGCAGCTGCCTACTGAGTATTCTACCAACCTCAACAAAAACCAAATCAACCGAAGATGTTCAAGTCGCACCTGGAAATGATCGGAAGCTACGAGCCCATCAGCAAGAAGGCTCGCTTCTTCAACACCTACCTTAAGTCGCTCAAGGGCTCCCAGGACATCATGGCCAAGGAGAAGCGCAGCTACAGCTCGTCCTTCGAATCGCAGAGCATCTACAGTGACTCGAAATTCGCCTGCGAAAGAGTCAAGTCGCCCGGCTACCACTACAACCCGGTCAGCAAGGACACCTATGGCGTTACGCCGAGAAAGATCAATGCACGCGACTTCACCCGCTAAACATCGTGTAGCAATAATATCTTTTTGTCTTAATGTGTCCCTAAGTTCTTGAACACCACACAAGAAGAGAAAAAACAACACCTAACCTACACATACACACACACATACGTAAAAAGATATACAGCCTAACACCTTTGTTATCTTTGAGACGAGACAACAACAACAACGTTAGAAGGAAGAGAGAGCGAGGAATGCAGCGCGGGGATGTCCCGATGCCGCGTGACTCCTCCAACTGGTCATTATGTCCAACAATCCCACACATAAGGTGTATTTTGTATATAAATAG] consensusID : consensus_278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [CCGCGGACGCGTGGGTGCTGGATAGCGTTATGGAGGGTGACGATGAGACGATCGCCGAGGTGGTGAAGCTGGTTGCGGACGGTATCAAGAGCGGTGCGGTGCGGCCCCTGCCGACGAGCGTGTTCACCGAGCAGCAGGTCGAGCAGGCTTTTCGCTTCATGGCTTCGGGTAAGCACATCGGCAAGGTGGTGGTACGCGTGCGCGAGGAAGAGAAGGCGAAGATTGTGCAGCCGGCGCCGAAGCTGATCAGCGCGATCCCGCGCACCTACATGCACGCCGAGAAGGTGTACATCCTGATCGGGGGGCTCGGCGGGTTCGGGCTGGAGCTGTCCAACTGGCTGGTTTCGCGCGGCGCCAAGATCATCGTGCTGACGTCGCGCAGCGGCGTGCGCACGGGCTATCAGTCGCTCATGATCCGACGCTGGACGGAGCGAGGCGTGAAGGTGGTGATCGACACGAACGACGTAACGACGCTGAAGGGCGCCCCAGAAGCTGCTGACGGACGCGGCCCGGCACGGCCCGGTCGGCGGG] [+] EMBL BM589127 [CCGCGGACGCGTGGGTGCTGGATAGCGTTATGGAGGGTGACGATGAGACGATCGCCGAGGTGGTGAAGCTGGTTGCGGACGGTATCAAGAGCGGTGCGGTGCGGCCCCTGCCGACGAGCGTGTTCACCGAGCAGCAGGTCGAGCAGGCTTTTCGCTTCATGGCTTCGGGTAAGCACATCGGCAAGGTGGTGGTACGCGTGCGCGAGGAAGAGAAGGCGAAGATTGTGCAGCCGGCGCCGAAGCTGATCAGCGCGATCCCGCGCACCTACATGCACGCCGAGAAGGTGTACATCCTGATCGGGGGGCTCGGCGGGTTCGGGCTGGAGCTGTCCAACTGGCTGGTTTCGCGCGGCGCCAAGATCATCGTGCTGACGTCGCGCAGCGGCGTGCGCACGGGCTATCAGTCGCTCATGATCCGACGCTGGACGGAGCGAGGCGTGAAGGTGGTGATCGACACGAACGACGTAACGACGCTGAAGGGCGCCCCAGAAGCTGCTGACGGACGCGGCCCGGCACGGCCCGGTCGGCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_278#0 CCGCGCACCACGAACAGTTGGCTATCCCGCAGCAGC-TGCCTACTGAGTATT-CTACCAA 58 consensus_278#1 --------------------------CCGCGGACGCGTGGGTGCTGGATAGCGTTATGGA 34 **** * ** ** * *** ** ** * consensus_278#0 CCTCAACAAAAACCAAATCAACCGAAGATGTTCAAGTCGCACCTGGAAATGATCGGAAGC 118 consensus_278#1 GGGTGACGATGAGACGATCGCC--GAGGTGGTGAAGCTGGTTGCGGACGGTATCAAGAGC 92 ** * * *** * ** ** * *** * *** *** *** consensus_278#0 TACGAGCCCATCAGCAAGAAGGCTCGCTTCTTCAACACCTACCTTAAGTCGCTCAAGGGC 178 consensus_278#1 GGTGCGGTGCGGCCCCTGCCGACGAGCGTGTTCACCGAGCAGC--AGGTCGAGCAGGCTT 150 * * * * * * ** * **** * * * * **** ** * consensus_278#0 TCCCAGGACATCATGGCCAAGGAGAAGCGCAGCTACA-GCTCGTCCTTCGAAT-CGCAGA 236 consensus_278#1 TTC----GCTTCATGGCTTCGGGTAAGCACATCGGCAAGGTGGTGGTACGCGTGCGCGAG 206 * * * ******* ** **** ** * ** * * ** * ** * *** consensus_278#0 GCATCTACAGTGACTCGAAATTCGCCTGCGAAAGAGTCAAGTCGCCCGGCTAC-CACTAC 295 consensus_278#1 GAAGAGAAGGCGAAGATTGTGCAGCCGGCGCCGAAGCTGATCAGCGCGATCCCGCGCACC 266 * * * * ** *** *** ** * ** ** * * * * consensus_278#0 AACCCGGTCAGCAAGGACACCTATGGCGTTACGCCGAGAAAGATCAATGCACGCGA-CTT 354 consensus_278#1 TACATGCACGCCGAGAAGGTGTA---CATCCTGATCGGGGGGCTCGGCGGGTTCGGGCTG 323 ** * * * ** * ** * * * * * ** * ** ** consensus_278#0 CACCCGCTAAACATCGTGTAGCAATAATATCTTTTTGTCTTAATGTGTCCCTAAGTTCTT 414 consensus_278#1 GAGCTGTCCAAC------TGGC--TGGTTTCGCGCGGCGCCAAGATCATC----GTGCT- 370 * * * *** * ** * * ** * ** * * ** ** consensus_278#0 GAACACCACACAAGAAGAGAAAAAACAACACCTAACCTACACATACACACACAC-ATACG 473 consensus_278#1 -GACGTCGCGCA-GCGGCGTGCGCACGGGCTATCAGTCGCTCATGATCCGACGCTGGACG 428 ** * * ** * * * ** * * * *** * ** * *** consensus_278#0 TAAAAAGATATACAGCCTAACACCTTTGTTATCTTTGAGACGAGACAACAACAACAACGT 533 consensus_278#1 GAGCGAGGCGTGAAGGTGGTGATCGACACGA--------ACGACGTAACGACGCTGAAGG 480 * ** * ** * * * **** *** ** * * consensus_278#0 TAGAAGGAAGAGAGAGCGAGGAATGCAGCGCGGGGATGTCCCGATGCCGCGTGACTCCTC 593 consensus_278#1 GCGCCCCAGAAGCTGCTGACGGACGCGGCCCGGCACGGCCCGGTCGGCGGG--------- 531 * * ** ** * * ** ** *** * ** * * ** * consensus_278#0 CAACTGGTCATTATGTCCAACAATCCCACACATAAGGTGTATTTTGTATATAAATAG 650 consensus_278#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||