These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [AGCCATTTCGAGATTGCTGCAGCTCGTATTATTCTCGCACGGAAGCGCACTGCATTTCAATTGGGGGGAGGTGGGCGTATTTAGTCATTTTATCGGATTGTATTTTTGTTATCGGATCAAACTATCGTATAATGGCATCAGTGTCAAAGGCGTGATATGCAACGGGCGCGTCGAAACATTGCCGCATAGAATTGTTTTCATTGTAGGATCTAAATCATACCCCCCCTCGTAACCATTAATAAGCAATGTTCGATAGAAAAGGCGATCTACTGCGCGTGCGTGTTATACGGTGCAAAGAGAGTGTAGATCCGTTATGTTGTAGCATCCTTCTAACAAAAGCAATCGACGCGGGTGTGGTCAACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGCGGGACGAACAGTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAAACAAAAGGACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAATGGGAAACCGTTTAAAATCAGTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACNAGAAGCGAGCCACGCGAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACAGAAGGCCATGAAAACATGGACCAT] [+] EMBL BX627161 [AGCCATTTCGAGATTGCTGCAGCTCGTATTATTCTCGCACGGAAGCGCACTGCATTTCAATTGGGGGGAGGTGGGCGTATTTAGTCATTTTATCGGATTGTATTTTTGTTATCGGATCAAACTATCGTATAATGGCATCAGTGTCAAAGGCGTGATATGCAACGGGCGCGTCGAAACATTGCCGCATAGAATTGTTTTCATTGTAGGATCTAAATCATACCCCCCCTCGTAACCATTAATAAGCAATGTTCGATAGAAAAGGCGATCTACTGCGCGTGCGTGTTATACGGTGCAAAGAGAGTGTAGATCCGTTATGTTGTAGCATCCTTCTAACAAAAGCAATCGACGCGGGTGTGGTCAACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGCGGGACGAACAGTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAAACAAAAGGACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAATGGGAAACCGTTTAAAATCAGTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACNAGAAGCGAGCCACGCGAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACAGAAGGCCATGAAAACATGGACCAT] consensusID : consensus_2791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [ATCCCGAGGTTAAAGAGTGTATCGTTATGTTGTAGCATCTTCTAACAAAAGCATCGACGCGGGTGTGGTCAACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGGGGGGACGAACAGTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAACAAAAGGACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAAAGGGAAACCGTTTAAAATCAGTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACAAGAAGCGAGCCACGCGAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACAGAAGGCCATGAAACATGGAC] [+] EMBL AL933364 [ATCCCGAGGTTAAAGAGTGTATCGTTATGTTGTAGCATCTTCTAACAAAAGCATCGACGCGGGTGTGGTCAACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGGGGGGACGAACAGTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAACAAAAGGACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAAAGGGAAACCGTTTAAAATCAGTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACAAGAAGCGAGCCACGCGAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACAGAAGGCCATGAAACATGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2791#0 AGCCATTTCGAGATTGCTGCAGCTCGTATTATTCTCGCACGGAAGCGCACTGCATTTCAA 60 consensus_2791#1 ------------------------------------------------------------ consensus_2791#0 TTGGGGGGAGGTGGGCGTATTTAGTCATTTTATCGGATTGTATTTTTGTTATCGGATCAA 120 consensus_2791#1 ------------------------------------------------------------ consensus_2791#0 ACTATCGTATAATGGCATCAGTGTCAAAGGCGTGATATGCAACGGGCGCGTCGAAACATT 180 consensus_2791#1 ------------------------------------------------------------ consensus_2791#0 GCCGCATAGAATTGTTTTCATTGTAGGATCTAAATCATACCCCCCCTCGTAACCATTAAT 240 consensus_2791#1 ------------------------------------------------------------ consensus_2791#0 AAGCAATGTTCGATAGAAAAGGCGATCTACTGCGCGTGCGTGTTATACGGTGCAAAGAGA 300 consensus_2791#1 --------------------------------------------ATCCCGAGGTTAAAGA 16 ** * * * * *** consensus_2791#0 GTGTAGATCCGTTATGTTGTAGCATCCTTCTAACAAAAGCAATCGACGCGGGTGTGGTCA 360 consensus_2791#1 GTGTA---TCGTTATGTTGTAGCATC-TTCTAACAAAAGCA-TCGACGCGGGTGTGGTCA 71 ***** ***************** ************** ****************** consensus_2791#0 ACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGCGGG-ACGAACA 419 consensus_2791#1 ACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGGGGGGACGAACA 131 ************************************************ *** ******* consensus_2791#0 GTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAAACAAAAGG 479 consensus_2791#1 GTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAA-CAAAAGG 190 **************************************************** ******* consensus_2791#0 ACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAATGGGAAACCGTTTAAAATCA 539 consensus_2791#1 ACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAAAGGGAAACCGTTTAAAATCA 250 **************************************** ******************* consensus_2791#0 GTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACNAGAAGCGAGCCACGC 599 consensus_2791#1 GTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACAAGAAGCGAGCCACGC 310 ******************************************** *************** consensus_2791#0 GAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACA 659 consensus_2791#1 GAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACA 370 ************************************************************ consensus_2791#0 GAAGGCCATGAAAACATGGACCAT 683 consensus_2791#1 GAAGGCCATGAAA-CATGGAC--- 390 ************* ******* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||