cluster # 2797

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Anopheles gambiae
cluster # 2797 cluster # 2797 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2797#0 length = 649 sequences # 1

consensus_2797#1 length = 455 sequences # 1

consensusID : consensus_2797#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [GGNAAGATGGTTACAACTTTACCTTAACATCTATACTGTTTCGAGTTTTTGAAAACTAACACACAAACAGTTTTGTCATCATCTTCTTATGCTCTTTGCTCTTTCAGCATGTTTAGTTCTCTGTACATACTGGTAGTTAAAATGGAAGAAACTTGTCACCGCGAAAGATAGATAATCGAAAAGCAAGACGAGAAAAAAAACAAACATACAAAACCTGAAACTAATGCAAGCGATATTAGCAACAATATACTTCATTCAATGCTGATCTAATACTACTACTCACATACACGCTCGTGGAAAGGATGGAATGCTGTTAAGAGAAGGAAAAGCAAACTCTATATNTATAGCACAGAAAGAGANAGCAAAGTNAAGANATGANAAGAAAATGAAATAATAAATACTAAAAAAAAATGAAAAGGCTNAGGANTGATAGAATACAAAGTATATGAAACGTGAAAAATCTAATGCTTCGTGTAAGATATAGTCGCTTTTCTNNCATGCAAGACAAAACTAACGCNAACNNCTATTTGCAGTGCCGCAGGGTCGCAACACGTTTTAGAGCAGCGTTTAGAGGCNAATTTGCNAAATTCAAAACAACCAAAAAACTCTCTTTCCTATGTNGTGTTTGTGAAAAACAAATCTAAAGATC]

[+] EMBL BX624256             [GGNAAGATGGTTACAACTTTACCTTAACATCTATACTGTTTCGAGTTTTTGAAAACTAACACACAAACAGTTTTGTCATCATCTTCTTATGCTCTTTGCTCTTTCAGCATGTTTAGTTCTCTGTACATACTGGTAGTTAAAATGGAAGAAACTTGTCACCGCGAAAGATAGATAATCGAAAAGCAAGACGAGAAAAAAAACAAACATACAAAACCTGAAACTAATGCAAGCGATATTAGCAACAATATACTTCATTCAATGCTGATCTAATACTACTACTCACATACACGCTCGTGGAAAGGATGGAATGCTGTTAAGAGAAGGAAAAGCAAACTCTATATNTATAGCACAGAAAGAGANAGCAAAGTNAAGANATGANAAGAAAATGAAATAATAAATACTAAAAAAAAATGAAAAGGCTNAGGANTGATAGAATACAAAGTATATGAAACGTGAAAAATCTAATGCTTCGTGTAAGATATAGTCGCTTTTCTNNCATGCAAGACAAAACTAACGCNAACNNCTATTTGCAGTGCCGCAGGGTCGCAACACGTTTTAGAGCAGCGTTTAGAGGCNAATTTGCNAAATTCAAAACAACCAAAAAACTCTCTTTCCTATGTNGTGTTTGTGAAAAACAAATCTAAAGATC]




>consensus_2797#0
GGNAAGATGGTTACAACTTTACCTTAACATCTATACTGTTTCGAGTTTTTGAAAACTAAC
ACACAAACAGTTTTGTCATCATCTTCTTATGCTCTTTGCTCTTTCAGCATGTTTAGTTCT
CTGTACATACTGGTAGTTAAAATGGAAGAAACTTGTCACCGCGAAAGATAGATAATCGAA
AAGCAAGACGAGAAAAAAAACAAACATACAAAACCTGAAACTAATGCAAGCGATATTAGC
AACAATATACTTCATTCAATGCTGATCTAATACTACTACTCACATACACGCTCGTGGAAA
GGATGGAATGCTGTTAAGAGAAGGAAAAGCAAACTCTATATNTATAGCACAGAAAGAGAN
AGCAAAGTNAAGANATGANAAGAAAATGAAATAATAAATACTAAAAAAAAATGAAAAGGC
TNAGGANTGATAGAATACAAAGTATATGAAACGTGAAAAATCTAATGCTTCGTGTAAGAT
ATAGTCGCTTTTCTNNCATGCAAGACAAAACTAACGCNAACNNCTATTTGCAGTGCCGCA
GGGTCGCAACACGTTTTAGAGCAGCGTTTAGAGGCNAATTTGCNAAATTCAAAACAACCA
AAAAACTCTCTTTCCTATGTNGTGTTTGTGAAAAACAAATCTAAAGATC

consensusID : consensus_2797#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [CCGGAGAGAGGGAGAGAGAGAGAGAGAGAGAAAAAAAAAAACAAACATACAAAACCTGAAACTAATGCAAGCGATATTAGCAACAATATACTTCATTCAATGCTGATCTAATACTACTACTCACATACACGCTCGTGGAAAGGATGGAATGCTGTTAAGAGAAGGAAAAGCAAACTCTATATTTATAGCACAGAAAGAGAGAGAAAGATAGAGAAAGCAAAGTTAAGAAATGAAAAGAAAATGATATAATAAATACTAAAAAAAAATGAAAAGGCTTAGGAATGTTAGAATCCCCCCCATATGAAACGTGAAAAATCTAATGCTTCGTGTAAGATATAGTCGCTTTTCTTCCATGCAAAACAAAACTAACGCAAACTCCTATTTGCAGTGCCGCAGGGTCGCAACACGTTTTAGAGCAGCGTTTAGAGGCAAATTTGCAAAATTCAAAACAAACC]

[+] EMBL BM655911             [CCGGAGAGAGGGAGAGAGAGAGAGAGAGAGAAAAAAAAAAACAAACATACAAAACCTGAAACTAATGCAAGCGATATTAGCAACAATATACTTCATTCAATGCTGATCTAATACTACTACTCACATACACGCTCGTGGAAAGGATGGAATGCTGTTAAGAGAAGGAAAAGCAAACTCTATATTTATAGCACAGAAAGAGAGAGAAAGATAGAGAAAGCAAAGTTAAGAAATGAAAAGAAAATGATATAATAAATACTAAAAAAAAATGAAAAGGCTTAGGAATGTTAGAATCCCCCCCATATGAAACGTGAAAAATCTAATGCTTCGTGTAAGATATAGTCGCTTTTCTTCCATGCAAAACAAAACTAACGCAAACTCCTATTTGCAGTGCCGCAGGGTCGCAACACGTTTTAGAGCAGCGTTTAGAGGCAAATTTGCAAAATTCAAAACAAACC]




>consensus_2797#1
CCGGAGAGAGGGAGAGAGAGAGAGAGAGAGAAAAAAAAAAACAAACATACAAAACCTGAA
ACTAATGCAAGCGATATTAGCAACAATATACTTCATTCAATGCTGATCTAATACTACTAC
TCACATACACGCTCGTGGAAAGGATGGAATGCTGTTAAGAGAAGGAAAAGCAAACTCTAT
ATTTATAGCACAGAAAGAGAGAGAAAGATAGAGAAAGCAAAGTTAAGAAATGAAAAGAAA
ATGATATAATAAATACTAAAAAAAAATGAAAAGGCTTAGGAATGTTAGAATCCCCCCCAT
ATGAAACGTGAAAAATCTAATGCTTCGTGTAAGATATAGTCGCTTTTCTTCCATGCAAAA
CAAAACTAACGCAAACTCCTATTTGCAGTGCCGCAGGGTCGCAACACGTTTTAGAGCAGC
GTTTAGAGGCAAATTTGCAAAATTCAAAACAAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2797#0      GGNAAGATGGTTACAACTTTACCTTAACATCTATACTGTTTCGAGTTTTTGAAAACTAAC 60
consensus_2797#1      ------------------------------------------------------------
                                                                                  

consensus_2797#0      ACACAAACAGTTTTGTCATCATCTTCTTATGCTCTTTGCTCTTTCAGCATGTTTAGTTCT 120
consensus_2797#1      ------------------------------------------------------------
                                                                                  

consensus_2797#0      CTGTACATACTGGTAGTTAAAATGGAAGAAACTTGTCACCGCGAAAGATAGATAATCGAA 180
consensus_2797#1      --------------------------------------CCG-GAGAGAGGGAGAGAGAGA 21
                                                            *** ** ***  ** *     *

consensus_2797#0      AAGCAAGACGAGAAAAAAAACAAACATACAAAACCTGAAACTAATGCAAGCGATATTAGC 240
consensus_2797#1      GAGAGAGAGAAAAAAAAAAACAAACATACAAAACCTGAAACTAATGCAAGCGATATTAGC 81
                       **  ***  * ************************************************

consensus_2797#0      AACAATATACTTCATTCAATGCTGATCTAATACTACTACTCACATACACGCTCGTGGAAA 300
consensus_2797#1      AACAATATACTTCATTCAATGCTGATCTAATACTACTACTCACATACACGCTCGTGGAAA 141
                      ************************************************************

consensus_2797#0      GGATGGAATGCTGTTAAGAGAAGGAAAAGCAAACTCTATATNTATAGCACAGAAAGAGAN 360
consensus_2797#1      GGATGGAATGCTGTTAAGAGAAGGAAAAGCAAACTCTATATTTATAGCACAGAAAGAGAG 201
                      ***************************************** ***************** 

consensus_2797#0      AG--------------CAAAGTNAAGANATGANAAGAAAATGAAATAATAAATACTAAAA 406
consensus_2797#1      AGAAAGATAGAGAAAGCAAAGTTAAGAAATGAAAAGAAAATGATATAATAAATACTAAAA 261
                      **              ****** **** **** ********** ****************

consensus_2797#0      AAAAATGAAAAGGCTNAGGANTGATAGAATACAAAGTATATGAAACGTGAAAAATCTAAT 466
consensus_2797#1      AAAAATGAAAAGGCTTAGGAATGTTAGAATCCCCCCCATATGAAACGTGAAAAATCTAAT 321
                      *************** **** ** ****** *     ***********************

consensus_2797#0      GCTTCGTGTAAGATATAGTCGCTTTTCTNNCATGCAAGACAAAACTAACGCNAACNNCTA 526
consensus_2797#1      GCTTCGTGTAAGATATAGTCGCTTTTCTTCCATGCAAAACAAAACTAACGCAAACTCCTA 381
                      ****************************  ******* ************* ***  ***

consensus_2797#0      TTTGCAGTGCCGCAGGGTCGCAACACGTTTTAGAGCAGCGTTTAGAGGCNAATTTGCNAA 586
consensus_2797#1      TTTGCAGTGCCGCAGGGTCGCAACACGTTTTAGAGCAGCGTTTAGAGGCAAATTTGCAAA 441
                      ************************************************* ******* **

consensus_2797#0      ATTCAAAACAACCAAAAAACTCTCTTTCCTATGTNGTGTTTGTGAAAAACAAATCTAAAG 646
consensus_2797#1      ATTCAAAACAAACC---------------------------------------------- 455
                      *********** *                                               

consensus_2797#0      ATC 649
consensus_2797#1      ---