These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [CCGCGGGCGCGATGCTCAGTTACCAAAGCAACGCCCGCGGCTAGTGTCCGGCTGATCTCCTTTCCAACGGCGACGACGTCGAACGTTCTTTCCGTGTTTTGTGTGATTACTCACAACGTGTGCGTGTGTGTGTGTGTGTGTGAAGCATTTTTTAGGCAGCAAACTAGTGTTAGCAAACGTCTCGATCAACCCCCTAGCTAAGCAACAGTGCAGTGTTTGACACGATAGCGGATAACGGACGCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTTCAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGGCTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCGTGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAACAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCACCAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAAACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAACCTGGACACGCTGATGCACATGCTGAACGGGAACCTC] [+] EMBL BM593706 [CCGCGGGCGCGATGCTCAGTTACCAAAGCAACGCCCGCGGCTAGTGTCCGGCTGATCTCCTTTCCAACGGCGACGACGTCGAACGTTCTTTCCGTGTTTTGTGTGATTACTCACAACGTGTGCGTGTGTGTGTGTGTGTGTGAAGCATTTTTTAGGCAGCAAACTAGTGTTAGCAAACGTCTCGATCAACCCCCTAGCTAAGCAACAGTGCAGTGTTTGACACGATAGCGGATAACGGACGCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTTCAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGGCTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCGTGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAACAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCACCAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAAACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAACCTGGACACGCTGATGCACATGCTGAACGGGAACCTC] consensusID : consensus_2810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [CCGCGGACGCGTGGGTGTTTGACACGATAGCGGATAACGGACGCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTTCAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGGCTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCGTGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAACAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCACCAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAAACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAACCTGGACAC] [+] EMBL BM587822 [CCGCGGACGCGTGGGTGTTTGACACGATAGCGGATAACGGACGCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTTCAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGGCTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCGTGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAACAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCACCAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAAACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAACCTGGACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2810#0 CCGCGGGCGCGATGCTCAGTTACCAAAGCAACGCCCGCGGCTAGTGTCCGGCTGATCTCC 60 consensus_2810#1 ------------------------------------------------------------ consensus_2810#0 TTTCCAACGGCGACGACGTCGAACGTTCTTTCCGTGTTTTGTGTGATTACTCACAACGTG 120 consensus_2810#1 ------------------------------------------------------------ consensus_2810#0 TGCGTGTGTGTGTGTGTGTGTGAAGCATTTTTTAGGCAGCAAACTAGTGTTAGCAAACGT 180 consensus_2810#1 ------------------------------------------------------------ consensus_2810#0 CTCGATCAACCCCCTAGCTAAGCAACAGTGCAGTGTTTGACACGATAGCGGATAACGGAC 240 consensus_2810#1 -----------------CCGCGGACGCGTG-GGTGTTTGACACGATAGCGGATAACGGAC 42 * * * *** **************************** consensus_2810#0 GCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTT 300 consensus_2810#1 GCGGCACTTAATCGGGTCGGCAGCGCAACAATAAATGCATAACGCCCACCTGCTGCCGTT 102 ************************************************************ consensus_2810#0 CAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGG 360 consensus_2810#1 CAATCGATGCGATCTTGCCAACAAGACGCCCCTGACCTGGCTGGAAGTGTTGGATAAGGG 162 ************************************************************ consensus_2810#0 CTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCG 420 consensus_2810#1 CTAAAGCGCTTCCCTTTTGCCCCGCCGAGCGAGACAGCAAACGATGGCACCGAAGTTCCG 222 ************************************************************ consensus_2810#0 TGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAA 480 consensus_2810#1 TGACGTCGATCAAACGACACCCCTCCTGCATGACTGTAACAACAACAACAACAACAGCAA 282 ************************************************************ consensus_2810#0 CAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCAC 540 consensus_2810#1 CAGCAACAGCAACATCAACAACGGACGGCTCAGCAATGGCACCGTCGTCACCGGTAGCAC 342 ************************************************************ consensus_2810#0 CAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAA 600 consensus_2810#1 CAACAGCAGCGCCACCACCATTGTCCACCTAGCGGCCGGCGGCGACCGGAAGCCAGGGAA 402 ************************************************************ consensus_2810#0 ACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAA 660 consensus_2810#1 ACCGGGCGCGCTGCTGCCCGATCCGGTCGCGGGCCGCACGCTCGACCATCCGACCACCAA 462 ************************************************************ consensus_2810#0 CCTGGACACGCTGATGCACATGCTGAACGGGAACCTC 697 consensus_2810#1 CCTGGACAC---------------------------- 471 ********* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||