cluster # 2823

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Anopheles gambiae
cluster # 2823 cluster # 2823 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2823#0 length = 674 sequences # 1

consensus_2823#1 length = 503 sequences # 1

consensusID : consensus_2823#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence

                              [ATGTACTTCCCCGGAGCGGAGAAGTACGACATCATCACATCACTGGATGGTTTGGAAAGCAACCTCGACCGGTGGATTCTATCACGCCTTGCCGGGTGTATTGAAACTGCAAACCGGGGTTTCGAAAAGTACGAGTTTGCCCTGGCTACAAACGCTTGCTACAACTTCTGGCTTTACGATTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTGGTGCACCT]

[+] EMBL BX621289             [ATGTACTTCCCCGGAGCGGAGAAGTACGACATCATCACATCACTGGATGGTTTGGAAAGCAACCTCGACCGGTGGATTCTATCACGCCTTGCCGGGTGTATTGAAACTGCAAACCGGGGTTTCGAAAAGTACGAGTTTGCCCTGGCTACAAACGCTTGCTACAACTTCTGGCTTTACGATTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTGGTGCACCT]




>consensus_2823#0
ATGTACTTCCCCGGAGCGGAGAAGTACGACATCATCACATCACTGGATGGTTTGGAAAGC
AACCTCGACCGGTGGATTCTATCACGCCTTGCCGGGTGTATTGAAACTGCAAACCGGGGT
TTCGAAAAGTACGAGTTTGCCCTGGCTACAAACGCTTGCTACAACTTCTGGCTTTACGAT
TTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCG
AAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCA
CCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCC
ACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGAT
GAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCA
CGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGAT
GAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCG
CAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAG
TGTGTGGTGCACCT

consensusID : consensus_2823#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [GAATCGCCCCGAGGNNTTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTG]

[+] EMBL AL932919             [GAATCGCCCCGAGGNNTTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTG]




>consensus_2823#1
GAATCGCCCCGAGGNNTTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAA
CGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGG
GTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGC
CCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCG
ACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTC
GGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCAT
ACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGG
AAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTC
TGACCATTTCCGGTCAGTGTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2823#0      ATGTACTTCCCCGGAGCGGAGAAGTACGACATCATCACATCACTGGATGGTTTGGAAAGC 60
consensus_2823#1      ------------------------------------------------------------
                                                                                  

consensus_2823#0      AACCTCGACCGGTGGATTCTATCACGCCTTGCCGGGTGTATTGAAACTGCAAACCGGGGT 120
consensus_2823#1      ------------------------------------------------------------
                                                                                  

consensus_2823#0      TTCGAAAAGTACGAGTTTGCCCTGGCTACAAACGCTTGCTACAACTTCTGGCTTTACGAT 180
consensus_2823#1      -------------------------------------------GAATCGCCCCGAGGNNT 17
                                                                    **   *       *

consensus_2823#0      TTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCG 240
consensus_2823#1      TTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCG 77
                      ************************************************************

consensus_2823#0      AAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCA 300
consensus_2823#1      AAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCA 137
                      ************************************************************

consensus_2823#0      CCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCC 360
consensus_2823#1      CCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCC 197
                      ************************************************************

consensus_2823#0      ACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGAT 420
consensus_2823#1      ACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGAT 257
                      ************************************************************

consensus_2823#0      GAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCA 480
consensus_2823#1      GAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCA 317
                      ************************************************************

consensus_2823#0      CGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGAT 540
consensus_2823#1      CGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGAT 377
                      ************************************************************

consensus_2823#0      GAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCG 600
consensus_2823#1      GAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCG 437
                      ************************************************************

consensus_2823#0      CAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAG 660
consensus_2823#1      CAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAG 497
                      ************************************************************

consensus_2823#0      TGTGTGGTGCACCT 674
consensus_2823#1      TGTGTG-------- 503
                      ******