cluster # 2834

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Anopheles gambiae
cluster # 2834 cluster # 2834 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2834#0 length = 670 sequences # 1

consensus_2834#1 length = 635 sequences # 1

consensusID : consensus_2834#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [CCGGGCAGCCGAAGCAGAAGCTGCCGACCGAAATCGAGCACACGCGCGCTGAAACGTTCGCGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTCTGCGCCCGTGTGCCGTGTGTATGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCACGCAGTGGAAGAAAACAACAACAAAACCGCGTGTTTGTTTGTGTGTGTGTGTGTGGGTGCGCCAATTAATCCCCCCATCCCACCCGTTTCCCTCCCGCTAACAAACACACACACACACCTACATTTTCCGGTCGTGTAGCGCCGTGTCCCAACTTTCCTTTGCTTCCCTTCTCGCCGCGTCCCTCTCTCCTTCTCTCTCGCTACCTGTTGTGACCTAGCCGGGCGTGACAATTGTGTGCGCAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGCGGCCCCGGTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCCCACCGGCCGCAATCAACCGGAAAGCGGAAAACAATCAACCGGACGAGATACACTACGTCAACCCGTTCGTGCACAAGCTCGTCTGGGACGATCCGATCGACAAGGCCAAGACAGCACTGCTGACGGTGATACTGCTGCCATTTCGCG]

[+] EMBL BM577742             [CCGGGCAGCCGAAGCAGAAGCTGCCGACCGAAATCGAGCACACGCGCGCTGAAACGTTCGCGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTCTGCGCCCGTGTGCCGTGTGTATGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCACGCAGTGGAAGAAAACAACAACAAAACCGCGTGTTTGTTTGTGTGTGTGTGTGTGGGTGCGCCAATTAATCCCCCCATCCCACCCGTTTCCCTCCCGCTAACAAACACACACACACACCTACATTTTCCGGTCGTGTAGCGCCGTGTCCCAACTTTCCTTTGCTTCCCTTCTCGCCGCGTCCCTCTCTCCTTCTCTCTCGCTACCTGTTGTGACCTAGCCGGGCGTGACAATTGTGTGCGCAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGCGGCCCCGGTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCCCACCGGCCGCAATCAACCGGAAAGCGGAAAACAATCAACCGGACGAGATACACTACGTCAACCCGTTCGTGCACAAGCTCGTCTGGGACGATCCGATCGACAAGGCCAAGACAGCACTGCTGACGGTGATACTGCTGCCATTTCGCG]




>consensus_2834#0
CCGGGCAGCCGAAGCAGAAGCTGCCGACCGAAATCGAGCACACGCGCGCTGAAACGTTCG
CGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTC
TGCGCCCGTGTGCCGTGTGTATGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCA
CGCAGTGGAAGAAAACAACAACAAAACCGCGTGTTTGTTTGTGTGTGTGTGTGTGGGTGC
GCCAATTAATCCCCCCATCCCACCCGTTTCCCTCCCGCTAACAAACACACACACACACCT
ACATTTTCCGGTCGTGTAGCGCCGTGTCCCAACTTTCCTTTGCTTCCCTTCTCGCCGCGT
CCCTCTCTCCTTCTCTCTCGCTACCTGTTGTGACCTAGCCGGGCGTGACAATTGTGTGCG
CAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGCGGCCCCG
GTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCCCACCGGCCGCAATCAAC
CGGAAAGCGGAAAACAATCAACCGGACGAGATACACTACGTCAACCCGTTCGTGCACAAG
CTCGTCTGGGACGATCCGATCGACAAGGCCAAGACAGCACTGCTGACGGTGATACTGCTG
CCATTTCGCG

consensusID : consensus_2834#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CCGCCACGCGTCCGCCGAAATCGAGCACACGCGCGCTGAAACGTTCGCGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTCTGCGCCCGTGTGCCGTGTGTGTGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCCGGGCGTGACAATTGTGTGCGCAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGCGGCCCCGGTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCCCACCGGCCGCAATCAACCGGAAAGCGGAAAACAATCAACCGGACGAGATACACTACGTCAACCCGTTCGTGCACAAGCTCGTCTGGGACGATCCGATCGACAAGGCCAAGACAGCACTGCTGACGGTGATACTGCTGCCATTTCGCGTCGTCCTAATTCTCGTCTGTCTGGTGGTGGCATGGGCCCTCGCCAATATCGGCCTCTATGGACTGTCCAAGGAGGATCTGCGTACGAAGCCACTGGTCGGCTGGCGGCGACGCTTGAAAGGGCCGCTCGGTGAGTTCGCCACGCTCGCGTACACCTGGCGCTGGGCTGGGCATTACGATACGGGGGCGGCAGGCGAGT]

[+] EMBL BM589508             [CCGCCACGCGTCCGCCGAAATCGAGCACACGCGCGCTGAAACGTTCGCGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTCTGCGCCCGTGTGCCGTGTGTGTGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCCGGGCGTGACAATTGTGTGCGCAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGCGGCCCCGGTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCCCACCGGCCGCAATCAACCGGAAAGCGGAAAACAATCAACCGGACGAGATACACTACGTCAACCCGTTCGTGCACAAGCTCGTCTGGGACGATCCGATCGACAAGGCCAAGACAGCACTGCTGACGGTGATACTGCTGCCATTTCGCGTCGTCCTAATTCTCGTCTGTCTGGTGGTGGCATGGGCCCTCGCCAATATCGGCCTCTATGGACTGTCCAAGGAGGATCTGCGTACGAAGCCACTGGTCGGCTGGCGGCGACGCTTGAAAGGGCCGCTCGGTGAGTTCGCCACGCTCGCGTACACCTGGCGCTGGGCTGGGCATTACGATACGGGGGCGGCAGGCGAGT]




>consensus_2834#1
CCGCCACGCGTCCGCCGAAATCGAGCACACGCGCGCTGAAACGTTCGCGTTCGAAGGAAA
TCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTCTGCGCCCGTGTGC
CGTGTGTGTGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCCGGGCGTGACAATT
GTGTGCGCAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGC
GGCCCCGGTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCCCACCGGCCGC
AATCAACCGGAAAGCGGAAAACAATCAACCGGACGAGATACACTACGTCAACCCGTTCGT
GCACAAGCTCGTCTGGGACGATCCGATCGACAAGGCCAAGACAGCACTGCTGACGGTGAT
ACTGCTGCCATTTCGCGTCGTCCTAATTCTCGTCTGTCTGGTGGTGGCATGGGCCCTCGC
CAATATCGGCCTCTATGGACTGTCCAAGGAGGATCTGCGTACGAAGCCACTGGTCGGCTG
GCGGCGACGCTTGAAAGGGCCGCTCGGTGAGTTCGCCACGCTCGCGTACACCTGGCGCTG
GGCTGGGCATTACGATACGGGGGCGGCAGGCGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2834#0      CCGGGCAGCCGAAGCAGAAGCTGCCGACCGAAATCGAGCACACGCGCGCTGAAACGTTCG 60
consensus_2834#1      -------------CCGCCACGCGTCCGCCGAAATCGAGCACACGCGCGCTGAAACGTTCG 47
                                    *   *   * *  *********************************

consensus_2834#0      CGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTC 120
consensus_2834#1      CGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTC 107
                      ************************************************************

consensus_2834#0      TGCGCCCGTGTGCCGTGTGTATGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCA 180
consensus_2834#1      TGCGCCCGTGTGCCGTGTGTGTGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCC 167
                      ******************** ************************************** 

consensus_2834#0      CGCAGTGGAAGAAAACAACAACAAAACCGCGTGTTTGTTTGTGTGTGTGTGTGTGGGTGC 240
consensus_2834#1      GGGCGTG-------------ACAATTGTGTGCGCAGGGCAGTATG-GCGGCCACGGCCGA 213
                       *  ***             ****    * * *   *   ** ** * *     **  * 

consensus_2834#0      GCCAATTAATCCCCCCATCCCACCCGTTTCCCTCCCGCTAACAAACACACACACACACCT 300
consensus_2834#1      ATGGG---AGCCACCGGTGGCACCGGAAGCGGCCCCGGTGGCGCA-ACCGGAACGCAAGG 269
                              * ** **  *  **** *   *   **** *  *  * **    ** **   

consensus_2834#0      ACATTTTCCGGTCGTGTAGCGCCGTGTCCCAACTTTCCTTTGCTTCCCTTCTCGCCGCGT 360
consensus_2834#1      GGACGGCACCGGCGCCCGGCCCACCGGCCGCAATCAACCGGAAAGCGGAAAACAAT-CAA 328
                        *     * * **    ** *   * **  * *   *       *      *    *  

consensus_2834#0      CCCTCTCTCCTTCTCTCTCGCTACCTGTT-GTGACCTAGCCGGGC-GTGACAATTGTGTG 418
consensus_2834#1      CCGGACGAGATACACTACGTCAACCCGTTCGTGCACAAGCTCGTCTGGGACGATCCGATC 388
                      **        * * **    * *** *** ***  * ***  * * * *** **    * 

consensus_2834#0      CGCAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGCGGCCC 478
consensus_2834#1      GACAAGGC--CAAGACAGC-ACTGCTGAC--GGTGATACTGCTGCCATTTCGCGTCGTCC 443
                        ** ***   * * * ** ** ** **   ** *  ** * ** **      *  * **

consensus_2834#0      CGGTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCC-CACCGGCCGCAATC 537
consensus_2834#1      TAATT------CTCGTCTGTCTGGTGGTGGCATGGGCCCTCGCCAATATCGGCCTCTATG 497
                         *       *  *   *   ** *  ****  *** * ** *   * ***** * ** 

consensus_2834#0      AACCGGAAAGCGGAAAACAATCAACCGGACGA--GATACACTA-CGTCAACCCGTTCGTG 594
consensus_2834#1      GACTGTCCAAGGAGGATCTGCGTACGAAGCCACTGGTCGGCTGGCGGCGACGCTTGAAAG 557
                       ** *   *  *   * *     **    * *  * *   **  ** * ** * *    *

consensus_2834#0      CACAAGCTCGTCTGGGACGATCCGATCGACAAGGCCAAG-ACAGCACTGCTGACGGTGAT 653
consensus_2834#1      GGCC-GCTCGGTGAGTTCGCCACGCTCGCGTACACCTGGCGCTGGGCTGGGCATTACGAT 616
                        *  *****    *  **   ** ***   *  **  *  * *  ***   *    ***

consensus_2834#0      ACTGCTGCCATTTCGCG--- 670
consensus_2834#1      AC-GGGGGCGGCAGGCGAGT 635
                      ** *  * *     ***