These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CCGGCGTGCCACTGCGATTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCTTTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCGTAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACAGCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGAAGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAAGCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTGCCTCATTAGGGATAATGAAAATGCAGCGGCAGAGCTGGGAAAACTGCTAGAAGCGAGCGTCTATCCGGTACCCCGAGTCGAAACATTGACGACGTGAGGGAAGCAAACAATTGCTTCTCGATTCTACGATAACGCTACGTAAATGTTAATGTCATATAATGGATTAAAATTATTTCCCATGCTGCAATACGCTCGCCATGTTACGCTTACAAGTAGACAACGTTAGTTTATTTTTAGCATACCCCATTACACTATGCTCGAAAAAAAAACCTAAATAAAACAACACTT] [+] EMBL BM613682 [CCGGCGTGCCACTGCGATTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCTTTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCGTAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACAGCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGAAGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAAGCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTGCCTCATTAGGGATAATGAAAATGCAGCGGCAGAGCTGGGAAAACTGCTAGAAGCGAGCGTCTATCCGGTACCCCGAGTCGAAACATTGACGACGTGAGGGAAGCAAACAATTGCTTCTCGATTCTACGATAACGCTACGTAAATGTTAATGTCATATAATGGATTAAAATTATTTCCCATGCTGCAATACGCTCGCCATGTTACGCTTACAAGTAGACAACGTTAGTTTATTTTTAGCATACCCCATTACACTATGCTCGAAAAAAAAACCTAAATAAAACAACACTT] consensusID : consensus_2840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [CCGGTTTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCTTTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCGTAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACAGCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGAAGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAAGCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTGCCTCATTAGAGATTGAATTAGAGAGTGAAAATGCAGCGGCAGAGTAGGACGAACTAGCTGGGAAAATTGATAGAAGCGAGCGTTTATCTGGTTCCCCGAGTCCAAACATTGCTTCTCGATTCAACGATAACGCTACGTAAATGAAC] [+] EMBL BM577784 [CCGGTTTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCTTTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCGTAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACAGCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGAAGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAAGCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTGCCTCATTAGAGATTGAATTAGAGAGTGAAAATGCAGCGGCAGAGTAGGACGAACTAGCTGGGAAAATTGATAGAAGCGAGCGTTTATCTGGTTCCCCGAGTCCAAACATTGCTTCTCGATTCAACGATAACGCTACGTAAATGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2840#0 CCGGCGTGCCACTGCGATTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCT 60 consensus_2840#1 -----------CCG-GTTTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCT 48 * * * ******************************************* consensus_2840#0 TTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCG 120 consensus_2840#1 TTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCG 108 ************************************************************ consensus_2840#0 TAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACA 180 consensus_2840#1 TAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACA 168 ************************************************************ consensus_2840#0 GCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGA 240 consensus_2840#1 GCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGA 228 ************************************************************ consensus_2840#0 AGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAA 300 consensus_2840#1 AGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAA 288 ************************************************************ consensus_2840#0 GCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTG 360 consensus_2840#1 GCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTG 348 ************************************************************ consensus_2840#0 CCTCATTAGGGAT----------AATGAAAATGCAGCGGCAGAG-------------CTG 397 consensus_2840#1 CCTCATTAGAGATTGAATTAGAGAGTGAAAATGCAGCGGCAGAGTAGGACGAACTAGCTG 408 ********* *** * ******************* *** consensus_2840#0 GGAAAACTGCTAGAAGCGAGCGTCTATCCGGTACCCCGAGTCGAAACATTGACGACGTGA 457 consensus_2840#1 GGAAAATTGATAGAAGCGAGCGTTTATCTGGTTCCCCGAGTCCAAACATTG--------- 459 ****** ** ************* **** *** ********* ******** consensus_2840#0 GGGAAGCAAACAATTGCTTCTCGATTCTACGATAACGCTACGTAAATGTTAATGTCATAT 517 consensus_2840#1 ----------------CTTCTCGATTCAACGATAACGCTACGTAAATG--AAC------- 494 *********** ******************** ** consensus_2840#0 AATGGATTAAAATTATTTCCCATGCTGCAATACGCTCGCCATGTTACGCTTACAAGTAGA 577 consensus_2840#1 ------------------------------------------------------------ consensus_2840#0 CAACGTTAGTTTATTTTTAGCATACCCCATTACACTATGCTCGAAAAAAAAACCTAAATA 637 consensus_2840#1 ------------------------------------------------------------ consensus_2840#0 AAACAACACTT 648 consensus_2840#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||