cluster # 2854

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Anopheles gambiae
cluster # 2854 cluster # 2854 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2854#0 length = 579 sequences # 1

consensus_2854#1 length = 405 sequences # 1

consensusID : consensus_2854#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [CCGGCTGTTGTCCGGCTAGGTTCGGACGGTAGATCGTAGATTAGCTAGCATGTAGTTCCCGTCCGGCTGTGTTGCGAGGTGTGCATTTGGTTGTTTTTGACGTGTGATTTTATCCCTTTTCGGTGGACGATCCCATCGTAAAGATAACATTTACGTGACTATGTATAAAATTGAACGGCGCGTTTGGTTGATGGCGTACATTGGCAAGGGTTAAGGATAAACTTTGATGAATGGTTCTCCCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCGCATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCAAGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCGAGGATTTGGCCGTCCGGTTGACCGCTTCCAAAAGCTTACGCAGCATCATGGATGACTTTGAGTTTGTGGCCGAGCAGTTTGTGGAGTACCTCGAACCGGCAGTGGCGCTGCTGTTCGGCCTGCTGAAGGAAGCGGTTGAGTGCGAAACGAAGATGACCGTGCTGTACGTGATGTCTTTCATC]

[+] EMBL BM602636             [CCGGCTGTTGTCCGGCTAGGTTCGGACGGTAGATCGTAGATTAGCTAGCATGTAGTTCCCGTCCGGCTGTGTTGCGAGGTGTGCATTTGGTTGTTTTTGACGTGTGATTTTATCCCTTTTCGGTGGACGATCCCATCGTAAAGATAACATTTACGTGACTATGTATAAAATTGAACGGCGCGTTTGGTTGATGGCGTACATTGGCAAGGGTTAAGGATAAACTTTGATGAATGGTTCTCCCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCGCATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCAAGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCGAGGATTTGGCCGTCCGGTTGACCGCTTCCAAAAGCTTACGCAGCATCATGGATGACTTTGAGTTTGTGGCCGAGCAGTTTGTGGAGTACCTCGAACCGGCAGTGGCGCTGCTGTTCGGCCTGCTGAAGGAAGCGGTTGAGTGCGAAACGAAGATGACCGTGCTGTACGTGATGTCTTTCATC]




>consensus_2854#0
CCGGCTGTTGTCCGGCTAGGTTCGGACGGTAGATCGTAGATTAGCTAGCATGTAGTTCCC
GTCCGGCTGTGTTGCGAGGTGTGCATTTGGTTGTTTTTGACGTGTGATTTTATCCCTTTT
CGGTGGACGATCCCATCGTAAAGATAACATTTACGTGACTATGTATAAAATTGAACGGCG
CGTTTGGTTGATGGCGTACATTGGCAAGGGTTAAGGATAAACTTTGATGAATGGTTCTCC
CGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCGC
ATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCAA
GTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCGAGGATTTGGCCGTCCGGTTGACC
GCTTCCAAAAGCTTACGCAGCATCATGGATGACTTTGAGTTTGTGGCCGAGCAGTTTGTG
GAGTACCTCGAACCGGCAGTGGCGCTGCTGTTCGGCCTGCTGAAGGAAGCGGTTGAGTGC
GAAACGAAGATGACCGTGCTGTACGTGATGTCTTTCATC

consensusID : consensus_2854#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [ATCCCCAGGTTAATATACATGTAGTTCCCNCGGCTGTGTTGCGAGTGTGCATTTGGTGTTTTGACGTGTGATTTTATCCCCTTTCGGTGGACGATCCCNTCGTGAAGATAACATTTACGTGACTATGTATTAAATTGAACGGCGCGCTTTGGTTGATGGCGTACATTGGCCAGGGTTAAGGATAAACTTTGATGAATGGTTCTCCCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCGCATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCAAGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCNAGGATTTGGCCGTCCGGTTGACCGCTTCCAAAAGCTTACGCAG]

[+] EMBL AL932928             [ATCCCCAGGTTAATATACATGTAGTTCCCNCGGCTGTGTTGCGAGTGTGCATTTGGTGTTTTGACGTGTGATTTTATCCCCTTTCGGTGGACGATCCCNTCGTGAAGATAACATTTACGTGACTATGTATTAAATTGAACGGCGCGCTTTGGTTGATGGCGTACATTGGCCAGGGTTAAGGATAAACTTTGATGAATGGTTCTCCCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCGCATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCAAGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCNAGGATTTGGCCGTCCGGTTGACCGCTTCCAAAAGCTTACGCAG]




>consensus_2854#1
ATCCCCAGGTTAATATACATGTAGTTCCCNCGGCTGTGTTGCGAGTGTGCATTTGGTGTT
TTGACGTGTGATTTTATCCCCTTTCGGTGGACGATCCCNTCGTGAAGATAACATTTACGT
GACTATGTATTAAATTGAACGGCGCGCTTTGGTTGATGGCGTACATTGGCCAGGGTTAAG
GATAAACTTTGATGAATGGTTCTCCCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCA
CAACTTCCGCATCATCCGCAAGCGCATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAG
GTTCTCGAAAGCGTTACGCCCTCAAGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATC
CNAGGATTTGGCCGTCCGGTTGACCGCTTCCAAAAGCTTACGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2854#0      CCGGCTGTTGTCCGGCTAGGTTCGGACGGTAGATCGTAGATTAGCTAGCATGTAGTTCCC 60
consensus_2854#1      -------------------------------ATCCCCAGGTTAATATACATGTAGTTCCC 29
                                                        *  ** ***     ************

consensus_2854#0      GTCCGGCTGTGTTGCGAGGTGTGCATTTGGTTGTTTTTGACGTGTGATTTTATCCCTTTT 120
consensus_2854#1      N--CGGCTGTGTTGCGAG-TGTGCATTTGGTG--TTTTGACGTGTGATTTTATCCCCTTT 84
                         *************** ************   ********************** ***

consensus_2854#0      CGGTGGACGATCCCATCGTAAAGATAACATTTACGTGACTATGTATAAAATTGAACGGCG 180
consensus_2854#1      CGGTGGACGATCCCNTCGTGAAGATAACATTTACGTGACTATGTATTAAATTGAACGGCG 144
                      ************** **** ************************** *************

consensus_2854#0      CG-TTTGGTTGATGGCGTACATTGGCAAGGGTTAAGGATAAACTTTGATGAATGGTTCTC 239
consensus_2854#1      CGCTTTGGTTGATGGCGTACATTGGCCAGGGTTAAGGATAAACTTTGATGAATGGTTCTC 204
                      ** *********************** *********************************

consensus_2854#0      CCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCG 299
consensus_2854#1      CCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCG 264
                      ************************************************************

consensus_2854#0      CATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCA 359
consensus_2854#1      CATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCA 324
                      ************************************************************

consensus_2854#0      AGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCGAGGATTTGGCCGTCCGGTTGAC 419
consensus_2854#1      AGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCNAGGATTTGGCCGTCCGGTTGAC 384
                      ************************************* **********************

consensus_2854#0      CGCTTCCAAAAGCTTACGCAGCATCATGGATGACTTTGAGTTTGTGGCCGAGCAGTTTGT 479
consensus_2854#1      CGCTTCCAAAAGCTTACGCAG--------------------------------------- 405
                      *********************                                       

consensus_2854#0      GGAGTACCTCGAACCGGCAGTGGCGCTGCTGTTCGGCCTGCTGAAGGAAGCGGTTGAGTG 539
consensus_2854#1      ------------------------------------------------------------
                                                                                  

consensus_2854#0      CGAAACGAAGATGACCGTGCTGTACGTGATGTCTTTCATC 579
consensus_2854#1      ----------------------------------------