These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CCGGCTGTTGTCCGGCTAGGTTCGGACGGTAGATCGTAGATTAGCTAGCATGTAGTTCCCGTCCGGCTGTGTTGCGAGGTGTGCATTTGGTTGTTTTTGACGTGTGATTTTATCCCTTTTCGGTGGACGATCCCATCGTAAAGATAACATTTACGTGACTATGTATAAAATTGAACGGCGCGTTTGGTTGATGGCGTACATTGGCAAGGGTTAAGGATAAACTTTGATGAATGGTTCTCCCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCGCATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCAAGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCGAGGATTTGGCCGTCCGGTTGACCGCTTCCAAAAGCTTACGCAGCATCATGGATGACTTTGAGTTTGTGGCCGAGCAGTTTGTGGAGTACCTCGAACCGGCAGTGGCGCTGCTGTTCGGCCTGCTGAAGGAAGCGGTTGAGTGCGAAACGAAGATGACCGTGCTGTACGTGATGTCTTTCATC] [+] EMBL BM602636 [CCGGCTGTTGTCCGGCTAGGTTCGGACGGTAGATCGTAGATTAGCTAGCATGTAGTTCCCGTCCGGCTGTGTTGCGAGGTGTGCATTTGGTTGTTTTTGACGTGTGATTTTATCCCTTTTCGGTGGACGATCCCATCGTAAAGATAACATTTACGTGACTATGTATAAAATTGAACGGCGCGTTTGGTTGATGGCGTACATTGGCAAGGGTTAAGGATAAACTTTGATGAATGGTTCTCCCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCGCATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCAAGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCGAGGATTTGGCCGTCCGGTTGACCGCTTCCAAAAGCTTACGCAGCATCATGGATGACTTTGAGTTTGTGGCCGAGCAGTTTGTGGAGTACCTCGAACCGGCAGTGGCGCTGCTGTTCGGCCTGCTGAAGGAAGCGGTTGAGTGCGAAACGAAGATGACCGTGCTGTACGTGATGTCTTTCATC] consensusID : consensus_2854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [ATCCCCAGGTTAATATACATGTAGTTCCCNCGGCTGTGTTGCGAGTGTGCATTTGGTGTTTTGACGTGTGATTTTATCCCCTTTCGGTGGACGATCCCNTCGTGAAGATAACATTTACGTGACTATGTATTAAATTGAACGGCGCGCTTTGGTTGATGGCGTACATTGGCCAGGGTTAAGGATAAACTTTGATGAATGGTTCTCCCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCGCATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCAAGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCNAGGATTTGGCCGTCCGGTTGACCGCTTCCAAAAGCTTACGCAG] [+] EMBL AL932928 [ATCCCCAGGTTAATATACATGTAGTTCCCNCGGCTGTGTTGCGAGTGTGCATTTGGTGTTTTGACGTGTGATTTTATCCCCTTTCGGTGGACGATCCCNTCGTGAAGATAACATTTACGTGACTATGTATTAAATTGAACGGCGCGCTTTGGTTGATGGCGTACATTGGCCAGGGTTAAGGATAAACTTTGATGAATGGTTCTCCCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCGCATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCAAGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCNAGGATTTGGCCGTCCGGTTGACCGCTTCCAAAAGCTTACGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2854#0 CCGGCTGTTGTCCGGCTAGGTTCGGACGGTAGATCGTAGATTAGCTAGCATGTAGTTCCC 60 consensus_2854#1 -------------------------------ATCCCCAGGTTAATATACATGTAGTTCCC 29 * ** *** ************ consensus_2854#0 GTCCGGCTGTGTTGCGAGGTGTGCATTTGGTTGTTTTTGACGTGTGATTTTATCCCTTTT 120 consensus_2854#1 N--CGGCTGTGTTGCGAG-TGTGCATTTGGTG--TTTTGACGTGTGATTTTATCCCCTTT 84 *************** ************ ********************** *** consensus_2854#0 CGGTGGACGATCCCATCGTAAAGATAACATTTACGTGACTATGTATAAAATTGAACGGCG 180 consensus_2854#1 CGGTGGACGATCCCNTCGTGAAGATAACATTTACGTGACTATGTATTAAATTGAACGGCG 144 ************** **** ************************** ************* consensus_2854#0 CG-TTTGGTTGATGGCGTACATTGGCAAGGGTTAAGGATAAACTTTGATGAATGGTTCTC 239 consensus_2854#1 CGCTTTGGTTGATGGCGTACATTGGCCAGGGTTAAGGATAAACTTTGATGAATGGTTCTC 204 ** *********************** ********************************* consensus_2854#0 CCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCG 299 consensus_2854#1 CCGGCAGCTGCTGGAGGAGCTAAAGTTTAAATCTCACAACTTCCGCATCATCCGCAAGCG 264 ************************************************************ consensus_2854#0 CATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCA 359 consensus_2854#1 CATCATCTGGCTTGTCGGGCAATGGACCGGCGTTAGGTTCTCGAAAGCGTTACGCCCTCA 324 ************************************************************ consensus_2854#0 AGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCGAGGATTTGGCCGTCCGGTTGAC 419 consensus_2854#1 AGTGTATCAGGCGTGTTTGGAGCTGCTGCAGCCATCCNAGGATTTGGCCGTCCGGTTGAC 384 ************************************* ********************** consensus_2854#0 CGCTTCCAAAAGCTTACGCAGCATCATGGATGACTTTGAGTTTGTGGCCGAGCAGTTTGT 479 consensus_2854#1 CGCTTCCAAAAGCTTACGCAG--------------------------------------- 405 ********************* consensus_2854#0 GGAGTACCTCGAACCGGCAGTGGCGCTGCTGTTCGGCCTGCTGAAGGAAGCGGTTGAGTG 539 consensus_2854#1 ------------------------------------------------------------ consensus_2854#0 CGAAACGAAGATGACCGTGCTGTACGTGATGTCTTTCATC 579 consensus_2854#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||