These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_289#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence [TCAGGCAGAATCGCCACGAGGTNNTGAAAGTAAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCGAACTTTTTCCTGCGCTGCGAGCCGACCGGCACACCGTGGGAGTTGGTACGCCACCCGTGCTCCGGACGACGGCTGTTCCATTTCGCCCGTCAGCGCTGCACCGCCCCGCTCGATTGGGAGGTACCGTGCGGGGGCACGGTCAACCCGGGACCGCTGGAACCGTGCCCGGAGGTGAGCTGCGCGACCGAGGCCGATCTGGGCCGGCTGTGGCCGACCGAGGAACCGCCCTCCTTTCTGCAGTGCATTCCGCAGGCGACCGGTGGGATTGCGCCCGTGCTGCAGCACTGTCCGTACGGGACCCTGTTTAGCATGCGGCATCAGGCATGCATAACCGTGTTCCGCTGGGAGGCGGAATGTACGTACGGAAGGGGTAGAAGGCTTGGAGCAGCCCCGGGGGCCGGACCCGGGATTGGGCNGAGCCAAACGGACGGAACCGGGACAAATTGGAATTCCAGCNAACACAACGGAAGGCAACATCGGTAACACGGCAAGGCCGGCCAACCGGAACCCAAGAAACCNACCCGGTGCCCGGGCGTTGGANCAC] [+] EMBL BX467251 [TCAGGCAGAATCGCCACGAGGTNNTGAAAGTAAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCGAACTTTTTCCTGCGCTGCGAGCCGACCGGCACACCGTGGGAGTTGGTACGCCACCCGTGCTCCGGACGACGGCTGTTCCATTTCGCCCGTCAGCGCTGCACCGCCCCGCTCGATTGGGAGGTACCGTGCGGGGGCACGGTCAACCCGGGACCGCTGGAACCGTGCCCGGAGGTGAGCTGCGCGACCGAGGCCGATCTGGGCCGGCTGTGGCCGACCGAGGAACCGCCCTCCTTTCTGCAGTGCATTCCGCAGGCGACCGGTGGGATTGCGCCCGTGCTGCAGCACTGTCCGTACGGGACCCTGTTTAGCATGCGGCATCAGGCATGCATAACCGTGTTCCGCTGGGAGGCGGAATGTACGTACGGAAGGGGTAGAAGGCTTGGAGCAGCCCCGGGGGCCGGACCCGGGATTGGGCNGAGCCAAACGGACGGAACCGGGACAAATTGGAATTCCAGCNAACACAACGGAAGGCAACATCGGTAACACGGCAAGGCCGGCCAACCGGAACCCAAGAAACCNACCCGGTGCCCGGGCGTTGGANCAC] consensusID : consensus_289#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence [GATCGGCCGAGGTNAGTAAAGGTGAAAGTAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCCGAACCTTTTTTCCCTGCGGCTGCGAGACCGACCGGGCACACCGTGGGAAGGTTGGTACGGCCACCCGTGCTCCGGGACGACGGCTGTTCCATTTCGCCCGTCAGGNGCTTGGCACCGANTCCCGGCTCGATTGGGCGAGGTACCCGTTGCGGGGGGCCAACGGGTCAAANCCCGGGACCGCCTTGGAAAACCGGTGCCCCAGGGAGGGTGAGCTGCCGCGNAACCGGAGGGCCGATCTGGAGCCCGGGCTGTGGGCCAGACCCGAGGGAACCGGGCCGTCCGTTTTCTTGCAGGTGCATTTCCGGCAGGGCCGAACCCGGGATTGGGGATTTGCGCCACCGGTTGGCTGCAGGCNAACTGTTCCGGTACGGGGACCCCTGGTTTAGCCATTGCGGGGCATTCCAGGGGCATTGCATTACACCGGTGGTTCCCGCTGGCGAGGCGGAAATTGTACGTTCGAGGGGTGAGGCTTGACACCCGGGGCCGAACCGGGTAGGCGAAGCCAAACGA] [+] EMBL BX468579 [GATCGGCCGAGGTNAGTAAAGGTGAAAGTAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCCGAACCTTTTTTCCCTGCGGCTGCGAGACCGACCGGGCACACCGTGGGAAGGTTGGTACGGCCACCCGTGCTCCGGGACGACGGCTGTTCCATTTCGCCCGTCAGGNGCTTGGCACCGANTCCCGGCTCGATTGGGCGAGGTACCCGTTGCGGGGGGCCAACGGGTCAAANCCCGGGACCGCCTTGGAAAACCGGTGCCCCAGGGAGGGTGAGCTGCCGCGNAACCGGAGGGCCGATCTGGAGCCCGGGCTGTGGGCCAGACCCGAGGGAACCGGGCCGTCCGTTTTCTTGCAGGTGCATTTCCGGCAGGGCCGAACCCGGGATTGGGGATTTGCGCCACCGGTTGGCTGCAGGCNAACTGTTCCGGTACGGGGACCCCTGGTTTAGCCATTGCGGGGCATTCCAGGGGCATTGCATTACACCGGTGGTTCCCGCTGGCGAGGCGGAAATTGTACGTTCGAGGGGTGAGGCTTGACACCCGGGGCCGAACCGGGTAGGCGAAGCCAAACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_289#0 --TCAGGCAGAATCGCCACGAGGTNNTGAAAGTAAGAGCCCATCCATCATGAGCAAGTTG 58 consensus_289#1 GATCGGCCGAGGTNA----GTAAAGGTGAAAGTA-GAGCCCATCCATCATGAGCAAGTTG 55 ** * * * * ******** ************************* consensus_289#0 CTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTC 118 consensus_289#1 CTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTC 115 ************************************************************ consensus_289#0 GCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTG 178 consensus_289#1 GCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTG 175 ************************************************************ consensus_289#0 ACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCC-GAACTTTTT---CCTGCG 234 consensus_289#1 ACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCCGAACCTTTTTTCCCTGCG 235 ***************************************** **** **** ****** consensus_289#0 -CTGCGAG-CCGACCGG-CACACCGTGGGA--GTTGGTACG-CCACCCGTGCTCCGG-AC 287 consensus_289#1 GCTGCGAGACCGACCGGGCACACCGTGGGAAGGTTGGTACGGCCACCCGTGCTCCGGGAC 295 ******* ******** ************ ********* *************** ** consensus_289#0 GACGGCTGTTCCATTTCGCCCGTCAG-CGCT--GCACCG---CCCCGCTCGATTGGG--A 339 consensus_289#1 GACGGCTGTTCCATTTCGCCCGTCAGGNGCTTGGCACCGANTCCCGGCTCGATTGGGCGA 355 ************************** *** ****** *** *********** * consensus_289#0 GGTACC-GTGCGGGGGCACGGTCAACCCGGGACCGCTGGAACCGTGCCCGGAGGTGAGCT 398 consensus_289#1 GGTACCCGTTGCGGGGGGCCAACGGGTCAAANC--CCGGGACCGC-CTTGGAAAACCGGT 412 ****** ** **** * * * * * ** **** * *** * * consensus_289#0 GCGCGACCGAGGCCGATCTGGGCCGGCTGTGGCCGACCGAGGAACCGCCCTCCTTTCTGC 458 consensus_289#1 GCCCCAGGGAGGGTGAGCTGCCGCGNAACCGGAGGGCCGA---TCTGGAGCCCGGGCTGT 469 ** * * **** ** *** ** ** * **** * * ** *** consensus_289#0 AGTGCATTCCGCAGGCGACCGGTGGGATTGCGCCCGTGCTGCAGCACTGTCCGTACGGGA 518 consensus_289#1 GGGCCAGACCCGAGGGAACCGGGCCGTCCGTTTTCTTGCAGGTGCATT-TCCG-GCAGGG 527 * ** ** *** ***** * * * *** * *** * **** * ** consensus_289#0 CCCTGTTTAGCATGCGGCATCAGGCATGCATAACCGTGTTCCGCTGGGAGGCGGAATGTA 578 consensus_289#1 CC-------GAACCCGGGATTGGGGATTTGCGCCACCGGTTGGCTGC-AGGCNAACTGTT 579 ** * * *** ** ** ** * * * **** **** * *** consensus_289#0 CGTACGGAAGGGGTAGAAGGCTTGGAGCAGCCCCGGGGGCCGGACCCGGGATTGGGCNGA 638 consensus_289#1 C---CGGTACGG---GGACCCCTGGTTTAGCCATTGCGGGGCATTCCAGGG--GCATTGC 631 * *** * ** * * * *** **** * ** ** ** * * consensus_289#0 GCCAAACGGACGGAACCGG--GACAAATTGGAATTCCAGCNAACACAACGGAAGGCAACA 696 consensus_289#1 ATTACACCGGTGGTTCCCGCTGGCGAGGCGGAAATTGTACGTTCGAGGGGTGAGGC---- 687 * ** * ** ** * * * * **** * * * * **** consensus_289#0 TCGGTAAC-ACGGCAAGGCCGGCCAACCGGAACCCAAGAAACCNACCCGGTGCCCGGGCG 755 consensus_289#1 TTGACACCCGGGGCCGAACCGGGTAGGCGAAGCCAAACGA-------------------- 727 * * * * *** **** * ** * ** ** * consensus_289#0 TTGGANCAC 764 consensus_289#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||