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Anopheles gambiae
cluster # 289 cluster # 289       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_289#0 length = 764 sequences # 1  
consensus_289#1 length = 727 sequences # 1  

consensusID : consensus_289#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 764
fasta sequence
                              [TCAGGCAGAATCGCCACGAGGTNNTGAAAGTAAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCGAACTTTTTCCTGCGCTGCGAGCCGACCGGCACACCGTGGGAGTTGGTACGCCACCCGTGCTCCGGACGACGGCTGTTCCATTTCGCCCGTCAGCGCTGCACCGCCCCGCTCGATTGGGAGGTACCGTGCGGGGGCACGGTCAACCCGGGACCGCTGGAACCGTGCCCGGAGGTGAGCTGCGCGACCGAGGCCGATCTGGGCCGGCTGTGGCCGACCGAGGAACCGCCCTCCTTTCTGCAGTGCATTCCGCAGGCGACCGGTGGGATTGCGCCCGTGCTGCAGCACTGTCCGTACGGGACCCTGTTTAGCATGCGGCATCAGGCATGCATAACCGTGTTCCGCTGGGAGGCGGAATGTACGTACGGAAGGGGTAGAAGGCTTGGAGCAGCCCCGGGGGCCGGACCCGGGATTGGGCNGAGCCAAACGGACGGAACCGGGACAAATTGGAATTCCAGCNAACACAACGGAAGGCAACATCGGTAACACGGCAAGGCCGGCCAACCGGAACCCAAGAAACCNACCCGGTGCCCGGGCGTTGGANCAC]

[+] EMBL BX467251             [TCAGGCAGAATCGCCACGAGGTNNTGAAAGTAAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCGAACTTTTTCCTGCGCTGCGAGCCGACCGGCACACCGTGGGAGTTGGTACGCCACCCGTGCTCCGGACGACGGCTGTTCCATTTCGCCCGTCAGCGCTGCACCGCCCCGCTCGATTGGGAGGTACCGTGCGGGGGCACGGTCAACCCGGGACCGCTGGAACCGTGCCCGGAGGTGAGCTGCGCGACCGAGGCCGATCTGGGCCGGCTGTGGCCGACCGAGGAACCGCCCTCCTTTCTGCAGTGCATTCCGCAGGCGACCGGTGGGATTGCGCCCGTGCTGCAGCACTGTCCGTACGGGACCCTGTTTAGCATGCGGCATCAGGCATGCATAACCGTGTTCCGCTGGGAGGCGGAATGTACGTACGGAAGGGGTAGAAGGCTTGGAGCAGCCCCGGGGGCCGGACCCGGGATTGGGCNGAGCCAAACGGACGGAACCGGGACAAATTGGAATTCCAGCNAACACAACGGAAGGCAACATCGGTAACACGGCAAGGCCGGCCAACCGGAACCCAAGAAACCNACCCGGTGCCCGGGCGTTGGANCAC]


>consensus_289#0 TCAGGCAGAATCGCCACGAGGTNNTGAAAGTAAGAGCCCATCCATCATGAGCAAGTTGCT ACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGC AGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGAC CGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCGAACTTTTTCCTGCGCTGCGA GCCGACCGGCACACCGTGGGAGTTGGTACGCCACCCGTGCTCCGGACGACGGCTGTTCCA TTTCGCCCGTCAGCGCTGCACCGCCCCGCTCGATTGGGAGGTACCGTGCGGGGGCACGGT CAACCCGGGACCGCTGGAACCGTGCCCGGAGGTGAGCTGCGCGACCGAGGCCGATCTGGG CCGGCTGTGGCCGACCGAGGAACCGCCCTCCTTTCTGCAGTGCATTCCGCAGGCGACCGG TGGGATTGCGCCCGTGCTGCAGCACTGTCCGTACGGGACCCTGTTTAGCATGCGGCATCA GGCATGCATAACCGTGTTCCGCTGGGAGGCGGAATGTACGTACGGAAGGGGTAGAAGGCT TGGAGCAGCCCCGGGGGCCGGACCCGGGATTGGGCNGAGCCAAACGGACGGAACCGGGAC AAATTGGAATTCCAGCNAACACAACGGAAGGCAACATCGGTAACACGGCAAGGCCGGCCA ACCGGAACCCAAGAAACCNACCCGGTGCCCGGGCGTTGGANCAC



consensusID : consensus_289#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 727
fasta sequence
                              [GATCGGCCGAGGTNAGTAAAGGTGAAAGTAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCCGAACCTTTTTTCCCTGCGGCTGCGAGACCGACCGGGCACACCGTGGGAAGGTTGGTACGGCCACCCGTGCTCCGGGACGACGGCTGTTCCATTTCGCCCGTCAGGNGCTTGGCACCGANTCCCGGCTCGATTGGGCGAGGTACCCGTTGCGGGGGGCCAACGGGTCAAANCCCGGGACCGCCTTGGAAAACCGGTGCCCCAGGGAGGGTGAGCTGCCGCGNAACCGGAGGGCCGATCTGGAGCCCGGGCTGTGGGCCAGACCCGAGGGAACCGGGCCGTCCGTTTTCTTGCAGGTGCATTTCCGGCAGGGCCGAACCCGGGATTGGGGATTTGCGCCACCGGTTGGCTGCAGGCNAACTGTTCCGGTACGGGGACCCCTGGTTTAGCCATTGCGGGGCATTCCAGGGGCATTGCATTACACCGGTGGTTCCCGCTGGCGAGGCGGAAATTGTACGTTCGAGGGGTGAGGCTTGACACCCGGGGCCGAACCGGGTAGGCGAAGCCAAACGA]

[+] EMBL BX468579             [GATCGGCCGAGGTNAGTAAAGGTGAAAGTAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCCGAACCTTTTTTCCCTGCGGCTGCGAGACCGACCGGGCACACCGTGGGAAGGTTGGTACGGCCACCCGTGCTCCGGGACGACGGCTGTTCCATTTCGCCCGTCAGGNGCTTGGCACCGANTCCCGGCTCGATTGGGCGAGGTACCCGTTGCGGGGGGCCAACGGGTCAAANCCCGGGACCGCCTTGGAAAACCGGTGCCCCAGGGAGGGTGAGCTGCCGCGNAACCGGAGGGCCGATCTGGAGCCCGGGCTGTGGGCCAGACCCGAGGGAACCGGGCCGTCCGTTTTCTTGCAGGTGCATTTCCGGCAGGGCCGAACCCGGGATTGGGGATTTGCGCCACCGGTTGGCTGCAGGCNAACTGTTCCGGTACGGGGACCCCTGGTTTAGCCATTGCGGGGCATTCCAGGGGCATTGCATTACACCGGTGGTTCCCGCTGGCGAGGCGGAAATTGTACGTTCGAGGGGTGAGGCTTGACACCCGGGGCCGAACCGGGTAGGCGAAGCCAAACGA]


>consensus_289#1 GATCGGCCGAGGTNAGTAAAGGTGAAAGTAGAGCCCATCCATCATGAGCAAGTTGCTACT TTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGA CGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGA GCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCCGAACCTTTTTTCCCTGCGGCTGC GAGACCGACCGGGCACACCGTGGGAAGGTTGGTACGGCCACCCGTGCTCCGGGACGACGG CTGTTCCATTTCGCCCGTCAGGNGCTTGGCACCGANTCCCGGCTCGATTGGGCGAGGTAC CCGTTGCGGGGGGCCAACGGGTCAAANCCCGGGACCGCCTTGGAAAACCGGTGCCCCAGG GAGGGTGAGCTGCCGCGNAACCGGAGGGCCGATCTGGAGCCCGGGCTGTGGGCCAGACCC GAGGGAACCGGGCCGTCCGTTTTCTTGCAGGTGCATTTCCGGCAGGGCCGAACCCGGGAT TGGGGATTTGCGCCACCGGTTGGCTGCAGGCNAACTGTTCCGGTACGGGGACCCCTGGTT TAGCCATTGCGGGGCATTCCAGGGGCATTGCATTACACCGGTGGTTCCCGCTGGCGAGGC GGAAATTGTACGTTCGAGGGGTGAGGCTTGACACCCGGGGCCGAACCGGGTAGGCGAAGC CAAACGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_289#0      --TCAGGCAGAATCGCCACGAGGTNNTGAAAGTAAGAGCCCATCCATCATGAGCAAGTTG 58
consensus_289#1      GATCGGCCGAGGTNA----GTAAAGGTGAAAGTA-GAGCCCATCCATCATGAGCAAGTTG 55
                       ** * *    *      *      ******** *************************

consensus_289#0      CTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTC 118
consensus_289#1      CTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTC 115
                     ************************************************************

consensus_289#0      GCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTG 178
consensus_289#1      GCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTG 175
                     ************************************************************

consensus_289#0      ACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCC-GAACTTTTT---CCTGCG 234
consensus_289#1      ACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCCGAACCTTTTTTCCCTGCG 235
                     ***************************************** **** ****   ******

consensus_289#0      -CTGCGAG-CCGACCGG-CACACCGTGGGA--GTTGGTACG-CCACCCGTGCTCCGG-AC 287
consensus_289#1      GCTGCGAGACCGACCGGGCACACCGTGGGAAGGTTGGTACGGCCACCCGTGCTCCGGGAC 295
                      ******* ******** ************  ********* *************** **

consensus_289#0      GACGGCTGTTCCATTTCGCCCGTCAG-CGCT--GCACCG---CCCCGCTCGATTGGG--A 339
consensus_289#1      GACGGCTGTTCCATTTCGCCCGTCAGGNGCTTGGCACCGANTCCCGGCTCGATTGGGCGA 355
                     **************************  ***  ******   *** ***********  *

consensus_289#0      GGTACC-GTGCGGGGGCACGGTCAACCCGGGACCGCTGGAACCGTGCCCGGAGGTGAGCT 398
consensus_289#1      GGTACCCGTTGCGGGGGGCCAACGGGTCAAANC--CCGGGACCGC-CTTGGAAAACCGGT 412
                     ****** **   ****  *   *    *    *  * ** ****  *  ***     * *

consensus_289#0      GCGCGACCGAGGCCGATCTGGGCCGGCTGTGGCCGACCGAGGAACCGCCCTCCTTTCTGC 458
consensus_289#1      GCCCCAGGGAGGGTGAGCTGCCGCGNAACCGGAGGGCCGA---TCTGGAGCCCGGGCTGT 469
                     ** * *  ****  ** ***   **     **  * ****    * *    **   *** 

consensus_289#0      AGTGCATTCCGCAGGCGACCGGTGGGATTGCGCCCGTGCTGCAGCACTGTCCGTACGGGA 518
consensus_289#1      GGGCCAGACCCGAGGGAACCGGGCCGTCCGTTTTCTTGCAGGTGCATT-TCCG-GCAGGG 527
                      *  **  **  ***  *****   *   *    * *** *  *** * ****  * ** 

consensus_289#0      CCCTGTTTAGCATGCGGCATCAGGCATGCATAACCGTGTTCCGCTGGGAGGCGGAATGTA 578
consensus_289#1      CC-------GAACCCGGGATTGGGGATTTGCGCCACCGGTTGGCTGC-AGGCNAACTGTT 579
                     **       * *  *** **  ** **      *   * *  ****  ****  * *** 

consensus_289#0      CGTACGGAAGGGGTAGAAGGCTTGGAGCAGCCCCGGGGGCCGGACCCGGGATTGGGCNGA 638
consensus_289#1      C---CGGTACGG---GGACCCCTGGTTTAGCCATTGCGGGGCATTCCAGGG--GCATTGC 631
                     *   *** * **   * *  * ***   ****   * **      ** **   *    * 

consensus_289#0      GCCAAACGGACGGAACCGG--GACAAATTGGAATTCCAGCNAACACAACGGAAGGCAACA 696
consensus_289#1      ATTACACCGGTGGTTCCCGCTGGCGAGGCGGAAATTGTACGTTCGAGGGGTGAGGC---- 687
                        * ** *  **  ** *  * * *   **** *    *   *     *  ****    

consensus_289#0      TCGGTAAC-ACGGCAAGGCCGGCCAACCGGAACCCAAGAAACCNACCCGGTGCCCGGGCG 755
consensus_289#1      TTGACACCCGGGGCCGAACCGGGTAGGCGAAGCCAAACGA-------------------- 727
                     * *  * *   ***    ****  *  ** * ** **  *                    

consensus_289#0      TTGGANCAC 764
consensus_289#1      ---------
                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)