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Anopheles gambiae
cluster # 2900 cluster # 2900       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2900#0 length = 697 sequences # 1  
consensus_2900#1 length = 621 sequences # 1  

consensusID : consensus_2900#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence
                              [CTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTGGAAATATAAACAAAGCGTCATGCATACCTCGCCTCACGCGCAAACAGTAGGTCGCATTTCAAACCTACCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACAATAGCCCAATGTCTTGAATGCGTCGTCTTGATTGATAGTGATACTGTGACCTGCAACACGCACCGTGCCACGCGTTGGAGCCGTTTCTCCTGTCATGATTTTCATGGTGGTCGTTTTGCCGGCACCATTGTGTCCGAGCAAAACCAGTACCTCCCCAGC]

[+] EMBL BX610392             [CTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTGGAAATATAAACAAAGCGTCATGCATACCTCGCCTCACGCGCAAACAGTAGGTCGCATTTCAAACCTACCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACAATAGCCCAATGTCTTGAATGCGTCGTCTTGATTGATAGTGATACTGTGACCTGCAACACGCACCGTGCCACGCGTTGGAGCCGTTTCTCCTGTCATGATTTTCATGGTGGTCGTTTTGCCGGCACCATTGTGTCCGAGCAAAACCAGTACCTCCCCAGC]


>consensus_2900#0 CTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGA CCCGAGACATCTGGAAATATAAACAAAGCGTCATGCATACCTCGCCTCACGCGCAAACAG TAGGTCGCATTTCAAACCTACCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACAT AGAGCGTCAGCTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGC TGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTT CATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCC TAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCG TGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCAT ACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACAAT AGCCCAATGTCTTGAATGCGTCGTCTTGATTGATAGTGATACTGTGACCTGCAACACGCA CCGTGCCACGCGTTGGAGCCGTTTCTCCTGTCATGATTTTCATGGTGGTCGTTTTGCCGG CACCATTGTGTCCGAGCAAAACCAGTACCTCCCCAGC



consensusID : consensus_2900#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence
                              [CAACGCCATCGAATCGATTGTCAATGCAGTTGCTGATAACCGGTGCAATGTGGTCCGTACTTTGGTCGAGCTGCAGCTGCTCCTGGCTGCTGCTCGGTTGGCTTTCGATTGGTGTCTCACTGTACACATTTTCTATGTGCTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACCGGACGCGTGGGCGG]

[-] EMBL BM640396             [CAACGCCATCGAATCGATTGTCAATGCAGTTGCTGATAACCGGTGCAATGTGGTCCGTACTTTGGTCGAGCTGCAGCTGCTCCTGGCTGCTGCTCGGTTGGCTTTCGATTGGTGTCTCACTGTACACATTTTCTATGTGCTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACCGGACGCGTGGGCGG]


>consensus_2900#1 CAACGCCATCGAATCGATTGTCAATGCAGTTGCTGATAACCGGTGCAATGTGGTCCGTAC TTTGGTCGAGCTGCAGCTGCTCCTGGCTGCTGCTCGGTTGGCTTTCGATTGGTGTCTCAC TGTACACATTTTCTATGTGCTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGAT TTTTCAGGTGTTGCGTCGACCCGAGACATCTTAGCTCTCCTTTGACCATGATTCCTACGC GCGAACATAGAGCGTCAGCTTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTC CGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAG TTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAA GTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGT GCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGA TGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTT GGGGACCGGACGCGTGGGCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2900#0      -----------------------------------------------------------C 1
consensus_2900#1      CAACGCCATCGAATCGATTGTCAATGCAGTTGCTGATAACCGGTGCAATGTGGTCCGTAC 60
                                                                                 *

consensus_2900#0      TTCAACTTAATCTCAA--GCGTGTAGCCAGCGCCGTATAGATTTTTCA--GGTGTTGCGT 57
consensus_2900#1      TTTGGTCGAGCTGCAGCTGCTCCTGGCTGCTGCTCGGTTGGCTTTCGATTGGTGTCTCAC 120
                      **      *    **   **   * **    **    * *  ***  *  *****  *  

consensus_2900#0      CGACCCGAGACATCTGGAAATATAAACAAAGCGTCATGCATAC--CTCGCCTCACGCGCA 115
consensus_2900#1      TG-TACACATTTTCTATGTGCTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGA 179
                       *   *      ***       * ***  *   *** ** *    *  **  *      *

consensus_2900#0      AACAGTAGGTCGCATTTCAAACC----TACCTTAGCTCTCCTTTGACCATGATTCCTACG 171
consensus_2900#1      TTTTTCAGGTGTTGCGTCGACCCGAGACATCTTAGCTCTCCTTTGACCATGATTCCTACG 239
                            ****      ** * **     * ******************************

consensus_2900#0      CGCGAACATAGAGCGTCAGCT-CTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTT 230
consensus_2900#1      CGCGAACATAGAGCGTCAGCTTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTT 299
                      ********************* **************************************

consensus_2900#0      CCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCA 290
consensus_2900#1      CCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCA 359
                      ************************************************************

consensus_2900#0      GTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTA 350
consensus_2900#1      GTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTA 419
                      ************************************************************

consensus_2900#0      AGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATG 410
consensus_2900#1      AGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATG 479
                      ************************************************************

consensus_2900#0      TGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGG 470
consensus_2900#1      TGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGG 539
                      ************************************************************

consensus_2900#0      ATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGT 530
consensus_2900#1      ATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGT 599
                      ************************************************************

consensus_2900#0      TGGGGACAATAGCCCAATGTCTTGAATGCGTCGTCTTGATTGATAGTGATACTGTGACCT 590
consensus_2900#1      TGGGGAC--CGGACGCGTGGGCGG------------------------------------ 621
                      *******    * *   **    *                                    

consensus_2900#0      GCAACACGCACCGTGCCACGCGTTGGAGCCGTTTCTCCTGTCATGATTTTCATGGTGGTC 650
consensus_2900#1      ------------------------------------------------------------
                                                                                  

consensus_2900#0      GTTTTGCCGGCACCATTGTGTCCGAGCAAAACCAGTACCTCCCCAGC 697
consensus_2900#1      -----------------------------------------------
                                                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)