cluster # 2911

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Anopheles gambiae
cluster # 2911 cluster # 2911 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2911#0 length = 736 sequences # 1

consensus_2911#1 length = 618 sequences # 1

consensusID : consensus_2911#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 736
fasta sequence

                              [GAATGCCCGAGGNNCAATTATACGCAAGCCCCGGGGCGTAGAAATATCTTTTCAACGTTACTGGAAAACAAAACTTTGCAATTAAGTTAGAGAGGGTTTTTTTTTTTATTTCTATAATGAAACCGAATTATTTCTCCATTTAGTTTGTACCCTGTTTTCGTGCGTACTCGCTTTGCTACCACACTTAATCTGTGCTTGGGTGAAAAATACAACTAAACGCCACCACGCTACTCGCGAGTAGATGAAACACCGAACCGGCAAAGTTTGGAAATGAAATTGAACAACAAAAGAAACTGTCCAAAATCTAGTCATTTTTGCATAGGGAGGGAAGGGGGAGTTAATTTAACTCCATTCCCTTCCCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAATTCGGTTTCAGCAGCTGCTGTATTTAAAGGTGTAAAATGCAACTTCTGCCGATATATTCAAGCATTGAAAACAAAAAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTCNTGGGTTAAGTTTAATGCGCNCATTTACTCTAAAGGCATTCTCCAGCTTAGAGGCGGGAAGCAGCCATTTAAGTAGCGTTNAAGCACAGATATCGTATGCTAAATTCATTACTGATAGGGAGGGACCGACTCAACATATAGCTAATTAGCAAGCGGGGAAAAGTCAAAGCGGATTGGTGCGCCGTACTCTATCAATCAATGCC]

[+] EMBL AL932505             [GAATGCCCGAGGNNCAATTATACGCAAGCCCCGGGGCGTAGAAATATCTTTTCAACGTTACTGGAAAACAAAACTTTGCAATTAAGTTAGAGAGGGTTTTTTTTTTTATTTCTATAATGAAACCGAATTATTTCTCCATTTAGTTTGTACCCTGTTTTCGTGCGTACTCGCTTTGCTACCACACTTAATCTGTGCTTGGGTGAAAAATACAACTAAACGCCACCACGCTACTCGCGAGTAGATGAAACACCGAACCGGCAAAGTTTGGAAATGAAATTGAACAACAAAAGAAACTGTCCAAAATCTAGTCATTTTTGCATAGGGAGGGAAGGGGGAGTTAATTTAACTCCATTCCCTTCCCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAATTCGGTTTCAGCAGCTGCTGTATTTAAAGGTGTAAAATGCAACTTCTGCCGATATATTCAAGCATTGAAAACAAAAAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTCNTGGGTTAAGTTTAATGCGCNCATTTACTCTAAAGGCATTCTCCAGCTTAGAGGCGGGAAGCAGCCATTTAAGTAGCGTTNAAGCACAGATATCGTATGCTAAATTCATTACTGATAGGGAGGGACCGACTCAACATATAGCTAATTAGCAAGCGGGGAAAAGTCAAAGCGGATTGGTGCGCCGTACTCTATCAATCAATGCC]




>consensus_2911#0
GAATGCCCGAGGNNCAATTATACGCAAGCCCCGGGGCGTAGAAATATCTTTTCAACGTTA
CTGGAAAACAAAACTTTGCAATTAAGTTAGAGAGGGTTTTTTTTTTTATTTCTATAATGA
AACCGAATTATTTCTCCATTTAGTTTGTACCCTGTTTTCGTGCGTACTCGCTTTGCTACC
ACACTTAATCTGTGCTTGGGTGAAAAATACAACTAAACGCCACCACGCTACTCGCGAGTA
GATGAAACACCGAACCGGCAAAGTTTGGAAATGAAATTGAACAACAAAAGAAACTGTCCA
AAATCTAGTCATTTTTGCATAGGGAGGGAAGGGGGAGTTAATTTAACTCCATTCCCTTCC
CCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAATT
CGGTTTCAGCAGCTGCTGTATTTAAAGGTGTAAAATGCAACTTCTGCCGATATATTCAAG
CATTGAAAACAAAAAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTCNTGGGTT
AAGTTTAATGCGCNCATTTACTCTAAAGGCATTCTCCAGCTTAGAGGCGGGAAGCAGCCA
TTTAAGTAGCGTTNAAGCACAGATATCGTATGCTAAATTCATTACTGATAGGGAGGGACC
GACTCAACATATAGCTAATTAGCAAGCGGGGAAAAGTCAAAGCGGATTGGTGCGCCGTAC
TCTATCAATCAATGCC

consensusID : consensus_2911#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGCCAAAATCTAGTCATTTTTGCATAGGGGAGGGAAGGGGGAGTTAATTTAACCCCATTCCCTTCCCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAATTCGGTTTCAGCAGCTGCTGTATTTAAAACCTGTAAAATGCAACTTCTGCCGATATATTCAAGCATTGAAAACAAACAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTTAGGGTTAAGTTTAATGCGCATTTACTCTAGCCGGCATTCTCAGTTAGAGGCGGGAAGCAGCATTTAAGTAGCGTTTAAACAAGATATCGTATGCTAAATTCATTACTGATAGGGAGGGACCGTACTCAGCATATAGGCTAGTTAGCAGGCGGGGAAAGTTAGAAAGTGATTGGTGCGCTGTACTTCTATGAATTAATTGCATTTACACACATCGCAAACCATCGTAACATTGAACACTTCCGCTAAGGGGAAAGGTCGGTTGAAAAGTTGGAAAATGGCATAGTTTTTCTTTCCCATTTTTCCCCCTTATCGTGTTATGTGAGGAAAAAACGCTATAAGCATTGACAAAAAAAACAAGAACCGCAAATCGTGATGTG]

[+] EMBL BM597320             [CCGCCAAAATCTAGTCATTTTTGCATAGGGGAGGGAAGGGGGAGTTAATTTAACCCCATTCCCTTCCCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAATTCGGTTTCAGCAGCTGCTGTATTTAAAACCTGTAAAATGCAACTTCTGCCGATATATTCAAGCATTGAAAACAAACAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTTAGGGTTAAGTTTAATGCGCATTTACTCTAGCCGGCATTCTCAGTTAGAGGCGGGAAGCAGCATTTAAGTAGCGTTTAAACAAGATATCGTATGCTAAATTCATTACTGATAGGGAGGGACCGTACTCAGCATATAGGCTAGTTAGCAGGCGGGGAAAGTTAGAAAGTGATTGGTGCGCTGTACTTCTATGAATTAATTGCATTTACACACATCGCAAACCATCGTAACATTGAACACTTCCGCTAAGGGGAAAGGTCGGTTGAAAAGTTGGAAAATGGCATAGTTTTTCTTTCCCATTTTTCCCCCTTATCGTGTTATGTGAGGAAAAAACGCTATAAGCATTGACAAAAAAAACAAGAACCGCAAATCGTGATGTG]




>consensus_2911#1
CCGCCAAAATCTAGTCATTTTTGCATAGGGGAGGGAAGGGGGAGTTAATTTAACCCCATT
CCCTTCCCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAA
CTAAATTCGGTTTCAGCAGCTGCTGTATTTAAAACCTGTAAAATGCAACTTCTGCCGATA
TATTCAAGCATTGAAAACAAACAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGT
TAGGGTTAAGTTTAATGCGCATTTACTCTAGCCGGCATTCTCAGTTAGAGGCGGGAAGCA
GCATTTAAGTAGCGTTTAAACAAGATATCGTATGCTAAATTCATTACTGATAGGGAGGGA
CCGTACTCAGCATATAGGCTAGTTAGCAGGCGGGGAAAGTTAGAAAGTGATTGGTGCGCT
GTACTTCTATGAATTAATTGCATTTACACACATCGCAAACCATCGTAACATTGAACACTT
CCGCTAAGGGGAAAGGTCGGTTGAAAAGTTGGAAAATGGCATAGTTTTTCTTTCCCATTT
TTCCCCCTTATCGTGTTATGTGAGGAAAAAACGCTATAAGCATTGACAAAAAAAACAAGA
ACCGCAAATCGTGATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2911#0      GAATGCCCGAGGNNCAATTATACGCAAGCCCCGGGGCGTAGAAATATCTTTTCAACGTTA 60
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      CTGGAAAACAAAACTTTGCAATTAAGTTAGAGAGGGTTTTTTTTTTTATTTCTATAATGA 120
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      AACCGAATTATTTCTCCATTTAGTTTGTACCCTGTTTTCGTGCGTACTCGCTTTGCTACC 180
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      ACACTTAATCTGTGCTTGGGTGAAAAATACAACTAAACGCCACCACGCTACTCGCGAGTA 240
consensus_2911#1      ------------------------------------------------------------
                                                                                  

consensus_2911#0      GATGAAACACCGAACCGGCAAAGTTTGGAAATGAAATTGAACAACAAAAGAAACTGTCCA 300
consensus_2911#1      -----------------------------------------------------CCG-CCA 6
                                                                           * * ***

consensus_2911#0      AAATCTAGTCATTTTTGCATAGGG-AGGGAAGGGGGAGTTAATTTAACTCCATTCCCTTC 359
consensus_2911#1      AAATCTAGTCATTTTTGCATAGGGGAGGGAAGGGGGAGTTAATTTAACCCCATTCCCTTC 66
                      ************************ *********************** ***********

consensus_2911#0      CCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAAT 419
consensus_2911#1      CCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAAT 126
                      ************************************************************

consensus_2911#0      TCGGTTTCAGCAGCTGCTGTATTTAAAGG-TGTAAAATGCAACTTCTGCCGATATATTCA 478
consensus_2911#1      TCGGTTTCAGCAGCTGCTGTATTTAAAACCTGTAAAATGCAACTTCTGCCGATATATTCA 186
                      ***************************   ******************************

consensus_2911#0      AGCATTGAAAACAAAAAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTCNTGGG 538
consensus_2911#1      AGCATTGAAAACAAACAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTTA-GGG 245
                      *************** **************************************   ***

consensus_2911#0      TTAAGTTTAATGCGCNCATTTACTCTAAA-GGCATTCTCCAGCTTAGAGGCGGGAAGCAG 597
consensus_2911#1      TTAAGTTTAATGCGCA--TTTACTCTAGCCGGCATTCTCAG--TTAGAGGCGGGAAGCAG 301
                      ***************   *********   *********    *****************

consensus_2911#0      CCATTTAAGTAGCGTTNAAGCACAGATATCGTATGCTAAATTCATTACTGATAGGGAGGG 657
consensus_2911#1      C-ATTTAAGTAGCGTTTAAACA-AGATATCGTATGCTAAATTCATTACTGATAGGGAGGG 359
                      * ************** ** ** *************************************

consensus_2911#0      ACCG-ACTCAACATATAG-CTAATTAGCAAGCGGGGAAAAGTCAAAGCGGATTGGTGCGC 715
consensus_2911#1      ACCGTACTCAGCATATAGGCTAGTTAGCAGGCGGGGAAAGTTAGAAAGTGATTGGTGCGC 419
                      **** ***** ******* *** ****** *********  *  **   ***********

consensus_2911#0      CGTACT-CTATCAATCAATGCC-------------------------------------- 736
consensus_2911#1      TGTACTTCTATGAATTAATTGCATTTACACACATCGCAAACCATCGTAACATTGAACACT 479
                       ***** **** *** ***  *                                      

consensus_2911#0      ------------------------------------------------------------
consensus_2911#1      TCCGCTAAGGGGAAAGGTCGGTTGAAAAGTTGGAAAATGGCATAGTTTTTCTTTCCCATT 539
                                                                                  

consensus_2911#0      ------------------------------------------------------------
consensus_2911#1      TTTCCCCCTTATCGTGTTATGTGAGGAAAAAACGCTATAAGCATTGACAAAAAAAACAAG 599
                                                                                  

consensus_2911#0      -------------------
consensus_2911#1      AACCGCAAATCGTGATGTG 618