These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 736 fasta sequence [GAATGCCCGAGGNNCAATTATACGCAAGCCCCGGGGCGTAGAAATATCTTTTCAACGTTACTGGAAAACAAAACTTTGCAATTAAGTTAGAGAGGGTTTTTTTTTTTATTTCTATAATGAAACCGAATTATTTCTCCATTTAGTTTGTACCCTGTTTTCGTGCGTACTCGCTTTGCTACCACACTTAATCTGTGCTTGGGTGAAAAATACAACTAAACGCCACCACGCTACTCGCGAGTAGATGAAACACCGAACCGGCAAAGTTTGGAAATGAAATTGAACAACAAAAGAAACTGTCCAAAATCTAGTCATTTTTGCATAGGGAGGGAAGGGGGAGTTAATTTAACTCCATTCCCTTCCCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAATTCGGTTTCAGCAGCTGCTGTATTTAAAGGTGTAAAATGCAACTTCTGCCGATATATTCAAGCATTGAAAACAAAAAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTCNTGGGTTAAGTTTAATGCGCNCATTTACTCTAAAGGCATTCTCCAGCTTAGAGGCGGGAAGCAGCCATTTAAGTAGCGTTNAAGCACAGATATCGTATGCTAAATTCATTACTGATAGGGAGGGACCGACTCAACATATAGCTAATTAGCAAGCGGGGAAAAGTCAAAGCGGATTGGTGCGCCGTACTCTATCAATCAATGCC] [+] EMBL AL932505 [GAATGCCCGAGGNNCAATTATACGCAAGCCCCGGGGCGTAGAAATATCTTTTCAACGTTACTGGAAAACAAAACTTTGCAATTAAGTTAGAGAGGGTTTTTTTTTTTATTTCTATAATGAAACCGAATTATTTCTCCATTTAGTTTGTACCCTGTTTTCGTGCGTACTCGCTTTGCTACCACACTTAATCTGTGCTTGGGTGAAAAATACAACTAAACGCCACCACGCTACTCGCGAGTAGATGAAACACCGAACCGGCAAAGTTTGGAAATGAAATTGAACAACAAAAGAAACTGTCCAAAATCTAGTCATTTTTGCATAGGGAGGGAAGGGGGAGTTAATTTAACTCCATTCCCTTCCCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAATTCGGTTTCAGCAGCTGCTGTATTTAAAGGTGTAAAATGCAACTTCTGCCGATATATTCAAGCATTGAAAACAAAAAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTCNTGGGTTAAGTTTAATGCGCNCATTTACTCTAAAGGCATTCTCCAGCTTAGAGGCGGGAAGCAGCCATTTAAGTAGCGTTNAAGCACAGATATCGTATGCTAAATTCATTACTGATAGGGAGGGACCGACTCAACATATAGCTAATTAGCAAGCGGGGAAAAGTCAAAGCGGATTGGTGCGCCGTACTCTATCAATCAATGCC] consensusID : consensus_2911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGCCAAAATCTAGTCATTTTTGCATAGGGGAGGGAAGGGGGAGTTAATTTAACCCCATTCCCTTCCCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAATTCGGTTTCAGCAGCTGCTGTATTTAAAACCTGTAAAATGCAACTTCTGCCGATATATTCAAGCATTGAAAACAAACAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTTAGGGTTAAGTTTAATGCGCATTTACTCTAGCCGGCATTCTCAGTTAGAGGCGGGAAGCAGCATTTAAGTAGCGTTTAAACAAGATATCGTATGCTAAATTCATTACTGATAGGGAGGGACCGTACTCAGCATATAGGCTAGTTAGCAGGCGGGGAAAGTTAGAAAGTGATTGGTGCGCTGTACTTCTATGAATTAATTGCATTTACACACATCGCAAACCATCGTAACATTGAACACTTCCGCTAAGGGGAAAGGTCGGTTGAAAAGTTGGAAAATGGCATAGTTTTTCTTTCCCATTTTTCCCCCTTATCGTGTTATGTGAGGAAAAAACGCTATAAGCATTGACAAAAAAAACAAGAACCGCAAATCGTGATGTG] [+] EMBL BM597320 [CCGCCAAAATCTAGTCATTTTTGCATAGGGGAGGGAAGGGGGAGTTAATTTAACCCCATTCCCTTCCCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAATTCGGTTTCAGCAGCTGCTGTATTTAAAACCTGTAAAATGCAACTTCTGCCGATATATTCAAGCATTGAAAACAAACAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTTAGGGTTAAGTTTAATGCGCATTTACTCTAGCCGGCATTCTCAGTTAGAGGCGGGAAGCAGCATTTAAGTAGCGTTTAAACAAGATATCGTATGCTAAATTCATTACTGATAGGGAGGGACCGTACTCAGCATATAGGCTAGTTAGCAGGCGGGGAAAGTTAGAAAGTGATTGGTGCGCTGTACTTCTATGAATTAATTGCATTTACACACATCGCAAACCATCGTAACATTGAACACTTCCGCTAAGGGGAAAGGTCGGTTGAAAAGTTGGAAAATGGCATAGTTTTTCTTTCCCATTTTTCCCCCTTATCGTGTTATGTGAGGAAAAAACGCTATAAGCATTGACAAAAAAAACAAGAACCGCAAATCGTGATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2911#0 GAATGCCCGAGGNNCAATTATACGCAAGCCCCGGGGCGTAGAAATATCTTTTCAACGTTA 60 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 CTGGAAAACAAAACTTTGCAATTAAGTTAGAGAGGGTTTTTTTTTTTATTTCTATAATGA 120 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 AACCGAATTATTTCTCCATTTAGTTTGTACCCTGTTTTCGTGCGTACTCGCTTTGCTACC 180 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 ACACTTAATCTGTGCTTGGGTGAAAAATACAACTAAACGCCACCACGCTACTCGCGAGTA 240 consensus_2911#1 ------------------------------------------------------------ consensus_2911#0 GATGAAACACCGAACCGGCAAAGTTTGGAAATGAAATTGAACAACAAAAGAAACTGTCCA 300 consensus_2911#1 -----------------------------------------------------CCG-CCA 6 * * *** consensus_2911#0 AAATCTAGTCATTTTTGCATAGGG-AGGGAAGGGGGAGTTAATTTAACTCCATTCCCTTC 359 consensus_2911#1 AAATCTAGTCATTTTTGCATAGGGGAGGGAAGGGGGAGTTAATTTAACCCCATTCCCTTC 66 ************************ *********************** *********** consensus_2911#0 CCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAAT 419 consensus_2911#1 CCCATCACTTCTTTGCTATGCTGCACGGATTCGTACACAATTGCCATATATGAACTAAAT 126 ************************************************************ consensus_2911#0 TCGGTTTCAGCAGCTGCTGTATTTAAAGG-TGTAAAATGCAACTTCTGCCGATATATTCA 478 consensus_2911#1 TCGGTTTCAGCAGCTGCTGTATTTAAAACCTGTAAAATGCAACTTCTGCCGATATATTCA 186 *************************** ****************************** consensus_2911#0 AGCATTGAAAACAAAAAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTCNTGGG 538 consensus_2911#1 AGCATTGAAAACAAACAAACAAACAACACTGCAAGGAGCGTGTAACAGTTTCGTTA-GGG 245 *************** ************************************** *** consensus_2911#0 TTAAGTTTAATGCGCNCATTTACTCTAAA-GGCATTCTCCAGCTTAGAGGCGGGAAGCAG 597 consensus_2911#1 TTAAGTTTAATGCGCA--TTTACTCTAGCCGGCATTCTCAG--TTAGAGGCGGGAAGCAG 301 *************** ********* ********* ***************** consensus_2911#0 CCATTTAAGTAGCGTTNAAGCACAGATATCGTATGCTAAATTCATTACTGATAGGGAGGG 657 consensus_2911#1 C-ATTTAAGTAGCGTTTAAACA-AGATATCGTATGCTAAATTCATTACTGATAGGGAGGG 359 * ************** ** ** ************************************* consensus_2911#0 ACCG-ACTCAACATATAG-CTAATTAGCAAGCGGGGAAAAGTCAAAGCGGATTGGTGCGC 715 consensus_2911#1 ACCGTACTCAGCATATAGGCTAGTTAGCAGGCGGGGAAAGTTAGAAAGTGATTGGTGCGC 419 **** ***** ******* *** ****** ********* * ** *********** consensus_2911#0 CGTACT-CTATCAATCAATGCC-------------------------------------- 736 consensus_2911#1 TGTACTTCTATGAATTAATTGCATTTACACACATCGCAAACCATCGTAACATTGAACACT 479 ***** **** *** *** * consensus_2911#0 ------------------------------------------------------------ consensus_2911#1 TCCGCTAAGGGGAAAGGTCGGTTGAAAAGTTGGAAAATGGCATAGTTTTTCTTTCCCATT 539 consensus_2911#0 ------------------------------------------------------------ consensus_2911#1 TTTCCCCCTTATCGTGTTATGTGAGGAAAAAACGCTATAAGCATTGACAAAAAAAACAAG 599 consensus_2911#0 ------------------- consensus_2911#1 AACCGCAAATCGTGATGTG 618 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||