These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CCGAGCGGATTGGCAAGCTTCTACTGTAATTGGCAAGCGGATTGGCAAGCTTCTACTGTAATGCTTTTCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAACTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTAGTTATTAGCGTTAAGTGCGTTGAAAAGCATTAGAAAAGTAAGAATTGCATGGCCAGCTGCCACTGATATTCCATAACGATTCGTCACTCAAAAGCTCATTACCGATATGTCAGGAAGGCAAATAATAAGACAGGCAAAGCAAATCACATCCACCAGCGCCGTCCGTTTTGTTTTTAGCCATTCTCAAATGCGGTCCTATTTGACTGCCCGGTTGACGGGGCGTGGGCACCGACGATAATCCGACGCTCTGGCAATCGCATGTCTCCGATTGCACTAATTGATTTTGCTGATAACGAAGCTTACAGCCGGATACCAGGTGTAAGGGACGATTTGTTTGTGTTACAATGATTTGCAATTGGTTAGCAAGAGGGCAAAAAACAACACACACGCAACGGGCTGTGTTGGCGGTGCGGTACCGGTCGATTCAATTGCACTTTAATAGAGCCACCAAGCGTCTCCATGCATCCAG] [+] EMBL BM657427 [CCGAGCGGATTGGCAAGCTTCTACTGTAATTGGCAAGCGGATTGGCAAGCTTCTACTGTAATGCTTTTCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAACTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTAGTTATTAGCGTTAAGTGCGTTGAAAAGCATTAGAAAAGTAAGAATTGCATGGCCAGCTGCCACTGATATTCCATAACGATTCGTCACTCAAAAGCTCATTACCGATATGTCAGGAAGGCAAATAATAAGACAGGCAAAGCAAATCACATCCACCAGCGCCGTCCGTTTTGTTTTTAGCCATTCTCAAATGCGGTCCTATTTGACTGCCCGGTTGACGGGGCGTGGGCACCGACGATAATCCGACGCTCTGGCAATCGCATGTCTCCGATTGCACTAATTGATTTTGCTGATAACGAAGCTTACAGCCGGATACCAGGTGTAAGGGACGATTTGTTTGTGTTACAATGATTTGCAATTGGTTAGCAAGAGGGCAAAAAACAACACACACGCAACGGGCTGTGTTGGCGGTGCGGTACCGGTCGATTCAATTGCACTTTAATAGAGCCACCAAGCGTCTCCATGCATCCAG] consensusID : consensus_2923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [GCACACGATTTAAAGTGAAAAGCATTACAGTAGAAGCTTGCCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAACTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTAGTTATTAGCGTTAAGTGCGTTGA] [+] EMBL BX617980 [GCACACGATTTAAAGTGAAAAGCATTACAGTAGAAGCTTGCCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAACTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTAGTTATTAGCGTTAAGTGCGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2923#0 CCGAGCGGATTGGCAAGCTTCTACTGTAATTGGCAAGCGGATTGGCAAGCTTCTACTGTA 60 consensus_2923#1 -------------------------GCACACGATT--TAAAGTGAAAAGCAT-TACAGTA 32 * * * * ** **** * *** *** consensus_2923#0 -ATGCTTTTCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAA 119 consensus_2923#1 GAAGCTTGCCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAA 92 * **** *************************************************** consensus_2923#0 CTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTA 179 consensus_2923#1 CTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTA 152 ************************************************************ consensus_2923#0 GTTATTAGCGTTAAGTGCGTTGAAAAGCATTAGAAAAGTAAGAATTGCATGGCCAGCTGC 239 consensus_2923#1 GTTATTAGCGTTAAGTGCGTTGA------------------------------------- 175 *********************** consensus_2923#0 CACTGATATTCCATAACGATTCGTCACTCAAAAGCTCATTACCGATATGTCAGGAAGGCA 299 consensus_2923#1 ------------------------------------------------------------ consensus_2923#0 AATAATAAGACAGGCAAAGCAAATCACATCCACCAGCGCCGTCCGTTTTGTTTTTAGCCA 359 consensus_2923#1 ------------------------------------------------------------ consensus_2923#0 TTCTCAAATGCGGTCCTATTTGACTGCCCGGTTGACGGGGCGTGGGCACCGACGATAATC 419 consensus_2923#1 ------------------------------------------------------------ consensus_2923#0 CGACGCTCTGGCAATCGCATGTCTCCGATTGCACTAATTGATTTTGCTGATAACGAAGCT 479 consensus_2923#1 ------------------------------------------------------------ consensus_2923#0 TACAGCCGGATACCAGGTGTAAGGGACGATTTGTTTGTGTTACAATGATTTGCAATTGGT 539 consensus_2923#1 ------------------------------------------------------------ consensus_2923#0 TAGCAAGAGGGCAAAAAACAACACACACGCAACGGGCTGTGTTGGCGGTGCGGTACCGGT 599 consensus_2923#1 ------------------------------------------------------------ consensus_2923#0 CGATTCAATTGCACTTTAATAGAGCCACCAAGCGTCTCCATGCATCCAG 648 consensus_2923#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||