These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGCCCACGCGTCCGGGTAAGTTATCTTTTCGTACAATTAAAACACATGTTAGGGACCGCAAAGAAAAAGGATTTTAAAATGATGATATAAACTAGAATGATTCTCTATGATCGTAAACTATCTCAAGCTCAACAGGACTGAAAATATTCAAAATTAGTCAACATAGTCCTGACATGCTCGTGTGTGTACAATGTTATAATTTGTATTCTTTCTTTCAATTTCAGACCCAACACAGCAGCGCAGAAAACAGACAAATTGATTAACAAGACCAAAACAATCTAAAAGACCCAACACAGCAAACGGATGGATTGGCGATTGAACAGTAGAACCAAAACAATTGTAAAAGATCTAAATACAATCCAAGGATACAACAATCGGACGAACCGATTAATGGAATTTGATTCGTACTAGGTTATGTTGCTGATTCCATCTCCTCTAATCCGCTGTATTCGGCATTAATTCCAAAAATAATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGTGAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTTAGCTGCCTTCAACATGGTCTTTCCGGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCACCATATATCACAATTTTTAGA] [+] EMBL BM578030 [CCGCCCACGCGTCCGGGTAAGTTATCTTTTCGTACAATTAAAACACATGTTAGGGACCGCAAAGAAAAAGGATTTTAAAATGATGATATAAACTAGAATGATTCTCTATGATCGTAAACTATCTCAAGCTCAACAGGACTGAAAATATTCAAAATTAGTCAACATAGTCCTGACATGCTCGTGTGTGTACAATGTTATAATTTGTATTCTTTCTTTCAATTTCAGACCCAACACAGCAGCGCAGAAAACAGACAAATTGATTAACAAGACCAAAACAATCTAAAAGACCCAACACAGCAAACGGATGGATTGGCGATTGAACAGTAGAACCAAAACAATTGTAAAAGATCTAAATACAATCCAAGGATACAACAATCGGACGAACCGATTAATGGAATTTGATTCGTACTAGGTTATGTTGCTGATTCCATCTCCTCTAATCCGCTGTATTCGGCATTAATTCCAAAAATAATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGTGAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTTAGCTGCCTTCAACATGGTCTTTCCGGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCACCATATATCACAATTTTTAGA] consensusID : consensus_2928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [CCGAAAAAACCTTCTTCGGTTTTAGATGGATTATTAACTTCCCCTTATTTTGTTTCTATTTTAAGATCTAAATACAATCCAAGGATACAACAATCGGACGAACCTATTAATGGAATTTGATTGGTACTAGATCAAATAGAAAGAAGGAATCGAACTGCGTGAGTTGGGCACTTTGACGCTTAAAAGGTTATGTTGCTGTTCCTATCTCTCCTATATTCCGCTGTATTCGGCATTATTTCCAAAAAGAATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGTGAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTAAGCTGCCTTCAACATGGTCTTTCCAGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCACCATATATCACAATTTTTAGAGTATAAGTGG] [+] EMBL BM597026 [CCGAAAAAACCTTCTTCGGTTTTAGATGGATTATTAACTTCCCCTTATTTTGTTTCTATTTTAAGATCTAAATACAATCCAAGGATACAACAATCGGACGAACCTATTAATGGAATTTGATTGGTACTAGATCAAATAGAAAGAAGGAATCGAACTGCGTGAGTTGGGCACTTTGACGCTTAAAAGGTTATGTTGCTGTTCCTATCTCTCCTATATTCCGCTGTATTCGGCATTATTTCCAAAAAGAATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGTGAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTAAGCTGCCTTCAACATGGTCTTTCCAGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCACCATATATCACAATTTTTAGAGTATAAGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2928#0 CCGCCCACGCGTCCGGGTAAGTTATCTTTTCGTACAATTAAAACACATGTTAGGGACCGC 60 consensus_2928#1 ------------------------------------------------------------ consensus_2928#0 AAAGAAAAAGGATTTTAAAATGATGATATAAACTAGAATGATTCTCTATGATCGTAAACT 120 consensus_2928#1 ------------------------------------------------------------ consensus_2928#0 ATCTCAAGCTCAACAGGACTGAAAATATTCAAAATTAGTCAACATAGTCCTGACATGCTC 180 consensus_2928#1 ------------------------------------------------------------ consensus_2928#0 GTGTGTGTACAATGTTATAATTTGTATTCTTTCTTTCAATTTCAGACCCAACACAGCAGC 240 consensus_2928#1 ----------------------------------------------CCGAAAAAACCTTC 14 ** ** * * * * consensus_2928#0 GCAGAAAACAGACAAATTGATTAACAAGACCAAAA-------CAATCTAAAAGACCCAAC 293 consensus_2928#1 TTCGGTTTTAGATGGATT-ATTAACTTCCCCTTATTTTGTTTCTATTTTAAGATCTAAAT 73 * *** *** ****** ** * * ** * ** * ** consensus_2928#0 ACAGCAAACGGATGGATTGGCGATTGAACAGTAGAACCAAAACAATTGTAAAAGATCTAA 353 consensus_2928#1 ACAATCCAAGGATACA---ACAATCGGACGAACCTATTAATGGAATTTGATTGGTACTAG 130 *** * **** * * ** * ** * ** **** * * *** consensus_2928#0 ATACAATCCAAGGATACAACAATCGGACGAACCGATTAATGGAATTTGATTCGTACTAGG 413 consensus_2928#1 ATCAAATAGAAAGA---AGGAATCGAACTGCGTGAGTTGGGCACTTTGACGCTTAAAAGG 187 ** *** ** ** * ***** ** ** * * * ***** * ** *** consensus_2928#0 TTATGTTGCTGATTCCATCTCCTCTAA--TCCGCTGTATTCGGCATTAATTCCAAAAATA 471 consensus_2928#1 TTATGTTGCTGTTCCTATCTCTCCTATATTCCGCTGTATTCGGCATTATTTCCAAAAAGA 247 *********** * * ***** *** ******************* ********* * consensus_2928#0 ATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGT 531 consensus_2928#1 ATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGT 307 ************************************************************ consensus_2928#0 GAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTTAGCTGCCTTCAACATGGTCTT 591 consensus_2928#1 GAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTAAGCTGCCTTCAACATGGTCTT 367 ************************************** ********************* consensus_2928#0 TCCGGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCAC 651 consensus_2928#1 TCCAGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCAC 427 *** ******************************************************** consensus_2928#0 CATATATCACAATTTTTAGA---------- 671 consensus_2928#1 CATATATCACAATTTTTAGAGTATAAGTGG 457 ******************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||