cluster # 294

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Anopheles gambiae
cluster # 294 cluster # 294 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_294#0 length = 674 sequences # 1

consensus_294#1 length = 584 sequences # 1

consensusID : consensus_294#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence

                              [CCGGTAGAAGTCAATGCATGGCAAAGAATGAACATAGAGCAGACAAAAACAAGTAGCGTCAACCAAAAACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACCATCTTACCCAAGGTATATATATATATATACATACAAAGAAACAAACAAAATCGAGCAAATAACAAATATAAACCCAAGCATATATGGAAGAAAATATATATATTTAGAGTATTGCATTCATGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCGAATTTGCAGCTGCTCGTGAAAACCAGCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAACAAAACAATGGCTTGACAAAATAATAGCAAGCTCGATCAAGTGTGCGATCTACTGAAAAACAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTGCGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGAGAATGAAACAAATCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAACAGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTCAGTAAGAGGTGTTT]

[+] EMBL BM626372             [CCGGTAGAAGTCAATGCATGGCAAAGAATGAACATAGAGCAGACAAAAACAAGTAGCGTCAACCAAAAACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACCATCTTACCCAAGGTATATATATATATATACATACAAAGAAACAAACAAAATCGAGCAAATAACAAATATAAACCCAAGCATATATGGAAGAAAATATATATATTTAGAGTATTGCATTCATGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCGAATTTGCAGCTGCTCGTGAAAACCAGCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAACAAAACAATGGCTTGACAAAATAATAGCAAGCTCGATCAAGTGTGCGATCTACTGAAAAACAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTGCGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGAGAATGAAACAAATCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAACAGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTCAGTAAGAGGTGTTT]




>consensus_294#0
CCGGTAGAAGTCAATGCATGGCAAAGAATGAACATAGAGCAGACAAAAACAAGTAGCGTC
AACCAAAAACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACC
ATCTTACCCAAGGTATATATATATATATACATACAAAGAAACAAACAAAATCGAGCAAAT
AACAAATATAAACCCAAGCATATATGGAAGAAAATATATATATTTAGAGTATTGCATTCA
TGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCGAATTTGCAG
CTGCTCGTGAAAACCAGCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAA
CAAAACAATGGCTTGACAAAATAATAGCAAGCTCGATCAAGTGTGCGATCTACTGAAAAA
CAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTG
CGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGA
GAATGAAACAAATCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAAC
AGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTC
AGTAAGAGGTGTTT

consensusID : consensus_294#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [ACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACCATCTTACCCAAGGTATATATATATACATACAAAGAAACAAACAAAATCGAGCAAATAACAAATATAAACCCAAGTATATATATTTAGAGTATTGCATTCATGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCAAATTTGCAGCAGCTCGTGAAAACCATCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAACAAAACAATGAAAAACAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTGCGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGAGAATGGAACAAGTCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAACAGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTCAGTAAGAGGTGTTTAAAGAGTTGGACAGGCAAAACCTACAGGGATAAGCAGTATAAC]

[+] EMBL BX615471             [ACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACCATCTTACCCAAGGTATATATATATACATACAAAGAAACAAACAAAATCGAGCAAATAACAAATATAAACCCAAGTATATATATTTAGAGTATTGCATTCATGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCAAATTTGCAGCAGCTCGTGAAAACCATCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAACAAAACAATGAAAAACAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTGCGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGAGAATGGAACAAGTCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAACAGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTCAGTAAGAGGTGTTTAAAGAGTTGGACAGGCAAAACCTACAGGGATAAGCAGTATAAC]




>consensus_294#1
ACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACCATCTTACC
CAAGGTATATATATATACATACAAAGAAACAAACAAAATCGAGCAAATAACAAATATAAA
CCCAAGTATATATATTTAGAGTATTGCATTCATGCTGGGCGAGCCAATTGGTGTAGCACT
TGGGAAAGAAGATGGTGAATGCAAATTTGCAGCAGCTCGTGAAAACCATCAAACATGGCC
TCAAGGTAAACGTGGGCGAAAAGCATGCGCAACAAAACAATGAAAAACAACTAATCGATC
GATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTGCGCTGTTTTGGAT
TATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGAGAATGGAACAAGT
CTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAACAGCGTGAGCGTGT
GTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTCAGTAAGAGGTGTT
TAAAGAGTTGGACAGGCAAAACCTACAGGGATAAGCAGTATAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_294#0      CCGGTAGAAGTCAATGCATGGCAAAGAATGAACATAGAGCAGACAAAAACAAGTAGCGTC 60
consensus_294#1      ------------------------------------------------------------
                                                                                 

consensus_294#0      AACCAAAAACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACC 120
consensus_294#1      --------ACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACC 52
                             ****************************************************

consensus_294#0      ATCTTACCCAAGGTATATATATATATATACATACAAAGAAACAAACAAAATCGAGCAAAT 180
consensus_294#1      ATCTTACCCAAGGTATATATATA----TACATACAAAGAAACAAACAAAATCGAGCAAAT 108
                     ***********************    *********************************

consensus_294#0      AACAAATATAAACCCAAGCATATATGGAAGAAAATATATATATTTAGAGTATTGCATTCA 240
consensus_294#1      AACAAATATAAACCCAAG----------------TATATATATTTAGAGTATTGCATTCA 152
                     ******************                **************************

consensus_294#0      TGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCGAATTTGCAG 300
consensus_294#1      TGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCAAATTTGCAG 212
                     ************************************************** *********

consensus_294#0      CTGCTCGTGAAAACCAGCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAA 360
consensus_294#1      CAGCTCGTGAAAACCATCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAA 272
                     * ************** *******************************************

consensus_294#0      CAAAACAATGGCTTGACAAAATAATAGCAAGCTCGATCAAGTGTGCGATCTACTGAAAAA 420
consensus_294#1      CAAAACAATG---------------------------------------------AAAAA 287
                     **********                                             *****

consensus_294#0      CAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTG 480
consensus_294#1      CAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTG 347
                     ************************************************************

consensus_294#0      CGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGA 540
consensus_294#1      CGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGA 407
                     ************************************************************

consensus_294#0      GAATGAAACAAATCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAAC 600
consensus_294#1      GAATGGAACAAGTCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAAC 467
                     ***** ***** ************************************************

consensus_294#0      AGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTC 660
consensus_294#1      AGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTC 527
                     ************************************************************

consensus_294#0      AGTAAGAGGTGTTT------------------------------------------- 674
consensus_294#1      AGTAAGAGGTGTTTAAAGAGTTGGACAGGCAAAACCTACAGGGATAAGCAGTATAAC 584
                     **************