These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1092 fasta sequence [GGCAGAATCCCCCCGAGGTTTAATATTCATTGACACTTTCACCTTTAACTGACTTTATTCGGGGTANAAATGTTTGTTAAATNTAACGTTTCATATACCTTTACAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATATAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAACAAAACGAAACTCTGTTGTATGTTGCTCTGTGACGGGATCTGGCGGANGCGTGTTAACCAAAGTGACANAACCTAAACGGACCTATNCTTAAACTGGGTACAAAATATATTAATGATATATACNGCTTGGCATTATTGATGCCACTATTAAAATGGCCCTNTGGATNNTCTGACTCAATACCGTATTTGGCNAAAACCAACACACATTACCGTATCCACATACCGGGCATCCNTCACCTGGGCACCTTGTANAGANACTGCCTGCATNTCTGNNCACAATTNCCNACCCGCNCACCNCNACCNCTGGCGCACCCACCCACCCTTGGNCNGCNACAACCCACAGANTNCCACCGCACNAAGCAAGCGCACGCATTCAACCCGCCCTTGGATACCTTNGGGTTGAGCCCCCTTAANTTGGTNAACGATTAATAAACTCTCAACCATGTAGCACAGTTNACCCACATCATCAATTGGCTTNTGACCACAGAATCATATTGTATCCNCGACCCTTTACCTAACACCAAATAAAANCCCCTAGGGACCGGACNCCCACGGCGGGGCNAAGGCAAACCGAACAACAACNCACGGNAANAACGGCAANNAAACAATAAACGGCCNCNCCACCGAACANCCAACCCGACCTGGAGAGCACCGCCCAACCACGAATACCCACAACACACACAGACAACCCCTGGGCAAACAGACACCCCTCTATCCAACAACCCAACCACTNGGCCGCCACCACCAAACACNAACAACAACACCCACAACANCNAAAACACCGNCCAACCCCACCGCGCACANCACCCCCCCCANACNCCCCCCCCACACACCNNGANACCACCGCACNNCACCACACGNG] [+] EMBL AL932048 [GGCAGAATCCCCCCGAGGTTTAATATTCATTGACACTTTCACCTTTAACTGACTTTATTCGGGGTANAAATGTTTGTTAAATNTAACGTTTCATATACCTTTACAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATATAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAACAAAACGAAACTCTGTTGTATGTTGCTCTGTGACGGGATCTGGCGGANGCGTGTTAACCAAAGTGACANAACCTAAACGGACCTATNCTTAAACTGGGTACAAAATATATTAATGATATATACNGCTTGGCATTATTGATGCCACTATTAAAATGGCCCTNTGGATNNTCTGACTCAATACCGTATTTGGCNAAAACCAACACACATTACCGTATCCACATACCGGGCATCCNTCACCTGGGCACCTTGTANAGANACTGCCTGCATNTCTGNNCACAATTNCCNACCCGCNCACCNCNACCNCTGGCGCACCCACCCACCCTTGGNCNGCNACAACCCACAGANTNCCACCGCACNAAGCAAGCGCACGCATTCAACCCGCCCTTGGATACCTTNGGGTTGAGCCCCCTTAANTTGGTNAACGATTAATAAACTCTCAACCATGTAGCACAGTTNACCCACATCATCAATTGGCTTNTGACCACAGAATCATATTGTATCCNCGACCCTTTACCTAACACCAAATAAAANCCCCTAGGGACCGGACNCCCACGGCGGGGCNAAGGCAAACCGAACAACAACNCACGGNAANAACGGCAANNAAACAATAAACGGCCNCNCCACCGAACANCCAACCCGACCTGGAGAGCACCGCCCAACCACGAATACCCACAACACACACAGACAACCCCTGGGCAAACAGACACCCCTCTATCCAACAACCCAACCACTNGGCCGCCACCACCAAACACNAACAACAACACCCACAACANCNAAAACACCGNCCAACCCCACCGCGCACANCACCCCCCCCANACNCCCCCCCCACACACCNNGANACCACCGCACNNCACCACACGNG] consensusID : consensus_2943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [CCAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATTAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAAAAAACGAAACTCTGTTGTTGTGCTCTGTGACGGGATCGGCGGAAGCGTGTTAACAAAGTGACAAACTAAACGGACCTATCTAACGGTCAATATTTTGATTTAGCTGCATTTGATGCACTTAAAGCCTTGATTCGTTTTATCGTTTGCAAACAAAAAATCGTTCAATCGGTTCCTACTGCACTGTTGATTGCTGATTGTAATCACGGTTTTTGGTCACACTGTTTACAGATTCGAGAGAGAGGTATTTATTAGCATGGTTTCTGCTTTGTCGAACGAAACGAATTGAAAATTTCAATCTCTACCCTACCATTTCAGATACGCTGTACTGCTGCCCCTAGTGTTAGATATAAATTAATGTGAATTCCACTTATGCTGGCCAGTTTTGTCGGGACCTTCTACCATTCCCTGGCGCCCACGGGTTGTTCTTACATTGTAATGACTAATACGCTCAGATCCTCGCTGTAACCCATTATCCATTAGGCACTGTTTTCCTTCTAAACACATGCTGCTATACTAAATCGAACATAGTTGTACGCGCGTCGTCCCTCACCCTCATCCTGTACTGTA] [-] EMBL BX627810 [CCAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATTAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAAAAAACGAAACTCTGTTGTTGTGCTCTGTGACGGGATCGGCGGAAGCGTGTTAACAAAGTGACAAACTAAACGGACCTATCTAACGGTCAATATTTTGATTTAGCTGCATTTGATGCACTTAAAGCCTTGATTCGTTTTATCGTTTGCAAACAAAAAATCGTTCAATCGGTTCCTACTGCACTGTTGATTGCTGATTGTAATCACGGTTTTTGGTCACACTGTTTACAGATTCGAGAGAGAGGTATTTATTAGCATGGTTTCTGCTTTGTCGAACGAAACGAATTGAAAATTTCAATCTCTACCCTACCATTTCAGATACGCTGTACTGCTGCCCCTAGTGTTAGATATAAATTAATGTGAATTCCACTTATGCTGGCCAGTTTTGTCGGGACCTTCTACCATTCCCTGGCGCCCACGGGTTGTTCTTACATTGTAATGACTAATACGCTCAGATCCTCGCTGTAACCCATTATCCATTAGGCACTGTTTTCCTTCTAAACACATGCTGCTATACTAAATCGAACATAGTTGTACGCGCGTCGTCCCTCACCCTCATCCTGTACTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2943#0 GGCAGAATCCCCCCGAGGTTTAATATTCATTGACACTTTCACCTTTAACTGACTTTATTC 60 consensus_2943#1 ------------------------------------------------------------ consensus_2943#0 GGGGTANAAATGTTTGTTAAATNTAACGTTTCATATACCTTTACAACACAACGTGATCAT 120 consensus_2943#1 ------------------------------------------CCAACACAACGTGATCAT 18 ***************** consensus_2943#0 CTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATATAGTAAACGTATTAAAAGCA 180 consensus_2943#1 CTCACCAATCAGATTCGTAACGGGCATAACAATAGTCAT-TAGTAAACGTATTAAAAGCA 77 *************************************** ******************** consensus_2943#0 ACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAACAAAACGAAA 240 consensus_2943#1 ACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAA-AAAACGAAA 136 ************************************************** ********* consensus_2943#0 CTCTGTTGTATGTTGCTCTGTGACGGGATCTGGCGGANGCGTGTTAACCAAAGTGACANA 300 consensus_2943#1 CTCTGTTGT-TGT-GCTCTGTGACGGGATC-GGCGGAAGCGTGTTAAC-AAAGTGACAAA 192 ********* *** **************** ****** ********** ********* * consensus_2943#0 ACCTAAACGGACCTATNCTTAAACTGGGTACAAAATATATTAATGATATATACNGCTTGG 360 consensus_2943#1 --CTAAACGGACCTATCT---AAC--GGT---CAATATTTTGATT-TAGCTGCA-TTTGA 240 ************** *** *** ***** ** ** ** * * *** consensus_2943#0 CATTATTGATGCCACTATTAAAATGGCCCTNTGGATNNTCTGACTCAATACCGTATTTGG 420 consensus_2943#1 TGCACTTAAAGCCTTGAT-----TCGTTTTATCG-TTTGCAAACAAAAAATCG--TTCAA 292 ** * *** ** * * * * * * * ** ** * ** ** consensus_2943#0 CNAAAACCAACACACATTACCGTATCCACATACCGGGCATCCNTCACCTGGGCACCTTGT 480 consensus_2943#1 TCGGTTCCTAC-TGCACTGTTGATTGCTGATTGTAATCACGGTT--TTTGGTCACACTGT 349 ** ** ** * * * * ** ** * *** *** *** consensus_2943#0 ANAGANACTGCCTGCATNTCTGNNCACAATTNCCNACCCGCNCACCNCNACCNCTGGCGC 540 consensus_2943#1 TTACAGA----------TTCGAGAGAGAGGTATTTATTAGCATGGTTTCTGCTTTGTCGA 399 * * * ** * * * * ** * ** ** consensus_2943#0 ACCCACCCACCCTTGGNCNGCNACAACCCACAGANTNCCACCGCACNAAGCAAGCGCACG 600 consensus_2943#1 ACGAAACGAA---TTGAAAATTTCAATCTCTACCCTACCATTTCAGATAC--GCTGTACT 454 ** * * * * * *** * * * *** ** * * ** consensus_2943#0 CATTCAACCCGCCCTTGG-ATACCTTNGGGTTGAGCCCCCTTAANTTGGTNAACGATTAA 659 consensus_2943#1 GCTGCCCCTAGTGTTAGATATAAATTAATGTGAATTCCACTTATGCTGGCCAGTTTTGTC 514 * * * * * * *** ** ** * ** **** *** * * consensus_2943#0 TAAACTCTCAACCATGTAGCACAGTTNACCCACATCATCAATTGGCTTNTGACCACAGAA 719 consensus_2943#1 GGGACCTTCTACCATTC--CCTGGCGCCCACGGGTTGTTC-TTACATTGTAATGACTAAT 571 ** ** ***** * * * * * * ** ** * * ** * consensus_2943#0 TCATATTGTATCCNCGACCCTTTACCTAACACCAAATAAAANCC-CCTAGGGACCGGACN 778 consensus_2943#1 ACGC-TCAGATCCTCG--CTGTAACCCATTATCCATTAGGCACTGTTTTCCTTCTAAACA 628 * * **** ** * * *** * * * * ** * * * ** consensus_2943#0 CCCACGGCGGGGCNAAGGCAAACCGAACAACAACNCACGGNAANAACGGCAANNAAACAA 838 consensus_2943#1 CATGCTGCTATACTAAATCGAAC---ATAGTTGTACGCGCGTCGTCCCTCACCCTCATCC 685 * * ** * ** * *** * * * ** * ** * consensus_2943#0 TAAACGGCCNCNCCACCGAACANCCAACCCGACCTGGAGAGCACCGCCCAACCACGAATA 898 consensus_2943#1 TGTACTGTA--------------------------------------------------- 694 * ** * consensus_2943#0 CCCACAACACACACAGACAACCCCTGGGCAAACAGACACCCCTCTATCCAACAACCCAAC 958 consensus_2943#1 ------------------------------------------------------------ consensus_2943#0 CACTNGGCCGCCACCACCAAACACNAACAACAACACCCACAACANCNAAAACACCGNCCA 1018 consensus_2943#1 ------------------------------------------------------------ consensus_2943#0 ACCCCACCGCGCACANCACCCCCCCCANACNCCCCCCCCACACACCNNGANACCACCGCA 1078 consensus_2943#1 ------------------------------------------------------------ consensus_2943#0 CNNCACCACACGNG 1092 consensus_2943#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||