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Anopheles gambiae
cluster # 2943 cluster # 2943       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2943#0 length = 1092 sequences # 1  
consensus_2943#1 length = 694 sequences # 1  

consensusID : consensus_2943#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1092
fasta sequence
                              [GGCAGAATCCCCCCGAGGTTTAATATTCATTGACACTTTCACCTTTAACTGACTTTATTCGGGGTANAAATGTTTGTTAAATNTAACGTTTCATATACCTTTACAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATATAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAACAAAACGAAACTCTGTTGTATGTTGCTCTGTGACGGGATCTGGCGGANGCGTGTTAACCAAAGTGACANAACCTAAACGGACCTATNCTTAAACTGGGTACAAAATATATTAATGATATATACNGCTTGGCATTATTGATGCCACTATTAAAATGGCCCTNTGGATNNTCTGACTCAATACCGTATTTGGCNAAAACCAACACACATTACCGTATCCACATACCGGGCATCCNTCACCTGGGCACCTTGTANAGANACTGCCTGCATNTCTGNNCACAATTNCCNACCCGCNCACCNCNACCNCTGGCGCACCCACCCACCCTTGGNCNGCNACAACCCACAGANTNCCACCGCACNAAGCAAGCGCACGCATTCAACCCGCCCTTGGATACCTTNGGGTTGAGCCCCCTTAANTTGGTNAACGATTAATAAACTCTCAACCATGTAGCACAGTTNACCCACATCATCAATTGGCTTNTGACCACAGAATCATATTGTATCCNCGACCCTTTACCTAACACCAAATAAAANCCCCTAGGGACCGGACNCCCACGGCGGGGCNAAGGCAAACCGAACAACAACNCACGGNAANAACGGCAANNAAACAATAAACGGCCNCNCCACCGAACANCCAACCCGACCTGGAGAGCACCGCCCAACCACGAATACCCACAACACACACAGACAACCCCTGGGCAAACAGACACCCCTCTATCCAACAACCCAACCACTNGGCCGCCACCACCAAACACNAACAACAACACCCACAACANCNAAAACACCGNCCAACCCCACCGCGCACANCACCCCCCCCANACNCCCCCCCCACACACCNNGANACCACCGCACNNCACCACACGNG]

[+] EMBL AL932048             [GGCAGAATCCCCCCGAGGTTTAATATTCATTGACACTTTCACCTTTAACTGACTTTATTCGGGGTANAAATGTTTGTTAAATNTAACGTTTCATATACCTTTACAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATATAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAACAAAACGAAACTCTGTTGTATGTTGCTCTGTGACGGGATCTGGCGGANGCGTGTTAACCAAAGTGACANAACCTAAACGGACCTATNCTTAAACTGGGTACAAAATATATTAATGATATATACNGCTTGGCATTATTGATGCCACTATTAAAATGGCCCTNTGGATNNTCTGACTCAATACCGTATTTGGCNAAAACCAACACACATTACCGTATCCACATACCGGGCATCCNTCACCTGGGCACCTTGTANAGANACTGCCTGCATNTCTGNNCACAATTNCCNACCCGCNCACCNCNACCNCTGGCGCACCCACCCACCCTTGGNCNGCNACAACCCACAGANTNCCACCGCACNAAGCAAGCGCACGCATTCAACCCGCCCTTGGATACCTTNGGGTTGAGCCCCCTTAANTTGGTNAACGATTAATAAACTCTCAACCATGTAGCACAGTTNACCCACATCATCAATTGGCTTNTGACCACAGAATCATATTGTATCCNCGACCCTTTACCTAACACCAAATAAAANCCCCTAGGGACCGGACNCCCACGGCGGGGCNAAGGCAAACCGAACAACAACNCACGGNAANAACGGCAANNAAACAATAAACGGCCNCNCCACCGAACANCCAACCCGACCTGGAGAGCACCGCCCAACCACGAATACCCACAACACACACAGACAACCCCTGGGCAAACAGACACCCCTCTATCCAACAACCCAACCACTNGGCCGCCACCACCAAACACNAACAACAACACCCACAACANCNAAAACACCGNCCAACCCCACCGCGCACANCACCCCCCCCANACNCCCCCCCCACACACCNNGANACCACCGCACNNCACCACACGNG]


>consensus_2943#0 GGCAGAATCCCCCCGAGGTTTAATATTCATTGACACTTTCACCTTTAACTGACTTTATTC GGGGTANAAATGTTTGTTAAATNTAACGTTTCATATACCTTTACAACACAACGTGATCAT CTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATATAGTAAACGTATTAAAAGCA ACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAACAAAACGAAA CTCTGTTGTATGTTGCTCTGTGACGGGATCTGGCGGANGCGTGTTAACCAAAGTGACANA ACCTAAACGGACCTATNCTTAAACTGGGTACAAAATATATTAATGATATATACNGCTTGG CATTATTGATGCCACTATTAAAATGGCCCTNTGGATNNTCTGACTCAATACCGTATTTGG CNAAAACCAACACACATTACCGTATCCACATACCGGGCATCCNTCACCTGGGCACCTTGT ANAGANACTGCCTGCATNTCTGNNCACAATTNCCNACCCGCNCACCNCNACCNCTGGCGC ACCCACCCACCCTTGGNCNGCNACAACCCACAGANTNCCACCGCACNAAGCAAGCGCACG CATTCAACCCGCCCTTGGATACCTTNGGGTTGAGCCCCCTTAANTTGGTNAACGATTAAT AAACTCTCAACCATGTAGCACAGTTNACCCACATCATCAATTGGCTTNTGACCACAGAAT CATATTGTATCCNCGACCCTTTACCTAACACCAAATAAAANCCCCTAGGGACCGGACNCC CACGGCGGGGCNAAGGCAAACCGAACAACAACNCACGGNAANAACGGCAANNAAACAATA AACGGCCNCNCCACCGAACANCCAACCCGACCTGGAGAGCACCGCCCAACCACGAATACC CACAACACACACAGACAACCCCTGGGCAAACAGACACCCCTCTATCCAACAACCCAACCA CTNGGCCGCCACCACCAAACACNAACAACAACACCCACAACANCNAAAACACCGNCCAAC CCCACCGCGCACANCACCCCCCCCANACNCCCCCCCCACACACCNNGANACCACCGCACN NCACCACACGNG



consensusID : consensus_2943#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence
                              [CCAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATTAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAAAAAACGAAACTCTGTTGTTGTGCTCTGTGACGGGATCGGCGGAAGCGTGTTAACAAAGTGACAAACTAAACGGACCTATCTAACGGTCAATATTTTGATTTAGCTGCATTTGATGCACTTAAAGCCTTGATTCGTTTTATCGTTTGCAAACAAAAAATCGTTCAATCGGTTCCTACTGCACTGTTGATTGCTGATTGTAATCACGGTTTTTGGTCACACTGTTTACAGATTCGAGAGAGAGGTATTTATTAGCATGGTTTCTGCTTTGTCGAACGAAACGAATTGAAAATTTCAATCTCTACCCTACCATTTCAGATACGCTGTACTGCTGCCCCTAGTGTTAGATATAAATTAATGTGAATTCCACTTATGCTGGCCAGTTTTGTCGGGACCTTCTACCATTCCCTGGCGCCCACGGGTTGTTCTTACATTGTAATGACTAATACGCTCAGATCCTCGCTGTAACCCATTATCCATTAGGCACTGTTTTCCTTCTAAACACATGCTGCTATACTAAATCGAACATAGTTGTACGCGCGTCGTCCCTCACCCTCATCCTGTACTGTA]

[-] EMBL BX627810             [CCAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATTAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAAAAAACGAAACTCTGTTGTTGTGCTCTGTGACGGGATCGGCGGAAGCGTGTTAACAAAGTGACAAACTAAACGGACCTATCTAACGGTCAATATTTTGATTTAGCTGCATTTGATGCACTTAAAGCCTTGATTCGTTTTATCGTTTGCAAACAAAAAATCGTTCAATCGGTTCCTACTGCACTGTTGATTGCTGATTGTAATCACGGTTTTTGGTCACACTGTTTACAGATTCGAGAGAGAGGTATTTATTAGCATGGTTTCTGCTTTGTCGAACGAAACGAATTGAAAATTTCAATCTCTACCCTACCATTTCAGATACGCTGTACTGCTGCCCCTAGTGTTAGATATAAATTAATGTGAATTCCACTTATGCTGGCCAGTTTTGTCGGGACCTTCTACCATTCCCTGGCGCCCACGGGTTGTTCTTACATTGTAATGACTAATACGCTCAGATCCTCGCTGTAACCCATTATCCATTAGGCACTGTTTTCCTTCTAAACACATGCTGCTATACTAAATCGAACATAGTTGTACGCGCGTCGTCCCTCACCCTCATCCTGTACTGTA]


>consensus_2943#1 CCAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATTAG TAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACAT CTACAAAAAAACGAAACTCTGTTGTTGTGCTCTGTGACGGGATCGGCGGAAGCGTGTTAA CAAAGTGACAAACTAAACGGACCTATCTAACGGTCAATATTTTGATTTAGCTGCATTTGA TGCACTTAAAGCCTTGATTCGTTTTATCGTTTGCAAACAAAAAATCGTTCAATCGGTTCC TACTGCACTGTTGATTGCTGATTGTAATCACGGTTTTTGGTCACACTGTTTACAGATTCG AGAGAGAGGTATTTATTAGCATGGTTTCTGCTTTGTCGAACGAAACGAATTGAAAATTTC AATCTCTACCCTACCATTTCAGATACGCTGTACTGCTGCCCCTAGTGTTAGATATAAATT AATGTGAATTCCACTTATGCTGGCCAGTTTTGTCGGGACCTTCTACCATTCCCTGGCGCC CACGGGTTGTTCTTACATTGTAATGACTAATACGCTCAGATCCTCGCTGTAACCCATTAT CCATTAGGCACTGTTTTCCTTCTAAACACATGCTGCTATACTAAATCGAACATAGTTGTA CGCGCGTCGTCCCTCACCCTCATCCTGTACTGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2943#0      GGCAGAATCCCCCCGAGGTTTAATATTCATTGACACTTTCACCTTTAACTGACTTTATTC 60
consensus_2943#1      ------------------------------------------------------------
                                                                                  

consensus_2943#0      GGGGTANAAATGTTTGTTAAATNTAACGTTTCATATACCTTTACAACACAACGTGATCAT 120
consensus_2943#1      ------------------------------------------CCAACACAACGTGATCAT 18
                                                                 *****************

consensus_2943#0      CTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATATAGTAAACGTATTAAAAGCA 180
consensus_2943#1      CTCACCAATCAGATTCGTAACGGGCATAACAATAGTCAT-TAGTAAACGTATTAAAAGCA 77
                      *************************************** ********************

consensus_2943#0      ACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAACAAAACGAAA 240
consensus_2943#1      ACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAA-AAAACGAAA 136
                      ************************************************** *********

consensus_2943#0      CTCTGTTGTATGTTGCTCTGTGACGGGATCTGGCGGANGCGTGTTAACCAAAGTGACANA 300
consensus_2943#1      CTCTGTTGT-TGT-GCTCTGTGACGGGATC-GGCGGAAGCGTGTTAAC-AAAGTGACAAA 192
                      ********* *** **************** ****** ********** ********* *

consensus_2943#0      ACCTAAACGGACCTATNCTTAAACTGGGTACAAAATATATTAATGATATATACNGCTTGG 360
consensus_2943#1      --CTAAACGGACCTATCT---AAC--GGT---CAATATTTTGATT-TAGCTGCA-TTTGA 240
                        **************     ***  ***    ***** ** **  **  * *   *** 

consensus_2943#0      CATTATTGATGCCACTATTAAAATGGCCCTNTGGATNNTCTGACTCAATACCGTATTTGG 420
consensus_2943#1      TGCACTTAAAGCCTTGAT-----TCGTTTTATCG-TTTGCAAACAAAAAATCG--TTCAA 292
                           ** * ***   **     * *   * * * *   *  **  ** * **  **   

consensus_2943#0      CNAAAACCAACACACATTACCGTATCCACATACCGGGCATCCNTCACCTGGGCACCTTGT 480
consensus_2943#1      TCGGTTCCTAC-TGCACTGTTGATTGCTGATTGTAATCACGGTT--TTTGGTCACACTGT 349
                            ** **   ** *   *  * *  **      **    *    *** ***  ***

consensus_2943#0      ANAGANACTGCCTGCATNTCTGNNCACAATTNCCNACCCGCNCACCNCNACCNCTGGCGC 540
consensus_2943#1      TTACAGA----------TTCGAGAGAGAGGTATTTATTAGCATGGTTTCTGCTTTGTCGA 399
                        * * *           **     * *  *    *   **          *  ** ** 

consensus_2943#0      ACCCACCCACCCTTGGNCNGCNACAACCCACAGANTNCCACCGCACNAAGCAAGCGCACG 600
consensus_2943#1      ACGAAACGAA---TTGAAAATTTCAATCTCTACCCTACCATTTCAGATAC--GCTGTACT 454
                      **  * * *    * *       *** *   *   * ***   **   *      * ** 

consensus_2943#0      CATTCAACCCGCCCTTGG-ATACCTTNGGGTTGAGCCCCCTTAANTTGGTNAACGATTAA 659
consensus_2943#1      GCTGCCCCTAGTGTTAGATATAAATTAATGTGAATTCCACTTATGCTGGCCAGTTTTGTC 514
                        * *  *  *   * *  ***  **   **  *  ** ****   ***  *    *   

consensus_2943#0      TAAACTCTCAACCATGTAGCACAGTTNACCCACATCATCAATTGGCTTNTGACCACAGAA 719
consensus_2943#1      GGGACCTTCTACCATTC--CCTGGCGCCCACGGGTTGTTC-TTACATTGTAATGACTAAT 571
                         **  ** *****    *   *    * *   *  *   **   ** * *  **  * 

consensus_2943#0      TCATATTGTATCCNCGACCCTTTACCTAACACCAAATAAAANCC-CCTAGGGACCGGACN 778
consensus_2943#1      ACGC-TCAGATCCTCG--CTGTAACCCATTATCCATTAGGCACTGTTTTCCTTCTAAACA 628
                       *   *   **** **  *  * *** *  * * * **    *    *     *   ** 

consensus_2943#0      CCCACGGCGGGGCNAAGGCAAACCGAACAACAACNCACGGNAANAACGGCAANNAAACAA 838
consensus_2943#1      CATGCTGCTATACTAAATCGAAC---ATAGTTGTACGCGCGTCGTCCCTCACCCTCATCC 685
                      *   * **    * **  * ***   * *      * **       *  **     *   

consensus_2943#0      TAAACGGCCNCNCCACCGAACANCCAACCCGACCTGGAGAGCACCGCCCAACCACGAATA 898
consensus_2943#1      TGTACTGTA--------------------------------------------------- 694
                      *  ** *                                                     

consensus_2943#0      CCCACAACACACACAGACAACCCCTGGGCAAACAGACACCCCTCTATCCAACAACCCAAC 958
consensus_2943#1      ------------------------------------------------------------
                                                                                  

consensus_2943#0      CACTNGGCCGCCACCACCAAACACNAACAACAACACCCACAACANCNAAAACACCGNCCA 1018
consensus_2943#1      ------------------------------------------------------------
                                                                                  

consensus_2943#0      ACCCCACCGCGCACANCACCCCCCCCANACNCCCCCCCCACACACCNNGANACCACCGCA 1078
consensus_2943#1      ------------------------------------------------------------
                                                                                  

consensus_2943#0      CNNCACCACACGNG 1092
consensus_2943#1      --------------
                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)