These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 962 fasta sequence [CCCCCCCCCCCACTAGCTCGCAGCAGATCGCCGAGGTTATATCCATCCACGATGGATAAACATCCAAATCTAAACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAGACTTGCAGCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATAGGACGAGCCGCAACGGNATTACGTGCACATNCCTGGAATATATTGCGAACGGATCNNACAGCAAACGAACGTGTAGTGCGCGCNTCATCAACTCCAATGCCCCTCTAAAATGCATTTTCTCACCCACCACCGACTAAGATTTGGTGACGNAAACAAGTATTAAACGCATACGATGAAGCACATTTCGGATGGGTCACAATGTATCAAACTTCCACAAGCAACGTAACGAAACGGCTCTGCAAACCTGGTTACCCCTGGGNCACCAAAAACACAGAAGTATTGCGTCCACTGGTTGTCCTNCTCTGACTGGCTAACACGCTGCAGTAGGNTGGAGTNTTCNGAAGGCGGAATGTTCCCGCAAGCGGGACCAAGGGCGTAGCAGGNGGAAAGCCCCAAGGGTAAAACACATATCTAGGGGCAGTTNANACAGATTCGAACATTGGCGCACAGNGTTGGGCGNCCCAAANCAGTACAAGAAACCACGGGCGCTCTTACGTTTGCTCCCCGGATGGCAAAAAGCAATTGGGTANTGCCCCAAACGACGAAACAAGCCGGGCGTANTTTGGGCCGGGACATCGGAAATTGGCACACCGTTGGGGAAGACAGGANAAACATTGGNGTAACATGNNCCTTGGCAATTCCCTCAAACTGNCTGCCACGGCCGGCGGGAAGGCATTTTAAATCATCGCACATTGGGGACTAACCGCCACAAGATGTTGGGGTGGAACATTGGCCGGGGANATTATCACTGGGGTCGATATGGGGAGTTTGCCAACGGAATAGCAATCTNTTACGCGAGAGAACC] [+] EMBL AL932964 [CCCCCCCCCCCACTAGCTCGCAGCAGATCGCCGAGGTTATATCCATCCACGATGGATAAACATCCAAATCTAAACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAGACTTGCAGCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATAGGACGAGCCGCAACGGNATTACGTGCACATNCCTGGAATATATTGCGAACGGATCNNACAGCAAACGAACGTGTAGTGCGCGCNTCATCAACTCCAATGCCCCTCTAAAATGCATTTTCTCACCCACCACCGACTAAGATTTGGTGACGNAAACAAGTATTAAACGCATACGATGAAGCACATTTCGGATGGGTCACAATGTATCAAACTTCCACAAGCAACGTAACGAAACGGCTCTGCAAACCTGGTTACCCCTGGGNCACCAAAAACACAGAAGTATTGCGTCCACTGGTTGTCCTNCTCTGACTGGCTAACACGCTGCAGTAGGNTGGAGTNTTCNGAAGGCGGAATGTTCCCGCAAGCGGGACCAAGGGCGTAGCAGGNGGAAAGCCCCAAGGGTAAAACACATATCTAGGGGCAGTTNANACAGATTCGAACATTGGCGCACAGNGTTGGGCGNCCCAAANCAGTACAAGAAACCACGGGCGCTCTTACGTTTGCTCCCCGGATGGCAAAAAGCAATTGGGTANTGCCCCAAACGACGAAACAAGCCGGGCGTANTTTGGGCCGGGACATCGGAAATTGGCACACCGTTGGGGAAGACAGGANAAACATTGGNGTAACATGNNCCTTGGCAATTCCCTCAAACTGNCTGCCACGGCCGGCGGGAAGGCATTTTAAATCATCGCACATTGGGGACTAACCGCCACAAGATGTTGGGGTGGAACATTGGCCGGGGANATTATCACTGGGGTCGATATGGGGAGTTTGCCAACGGAATAGCAATCTNTTACGCGAGAGAACC] consensusID : consensus_2950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence [ATGGATAAACATCCAAATNTANACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAGCTTGCAGCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATGGACGAGGCCGAACGGCATTACGTGCACATCCCTGAATATATGCGAACGGATCACAGCAAACGAACGGTAGTGCCGTTCATCAATCCAATGCCCCTCAAAATGCATTTTCTCACCCACCACCGACTAAGATTGGTGACGAAAAAGATTAAACCATCGATGAAGCACATTCGGATGGCAAAATACAACTCACACACTACGAACGTCGAACTGTACCTGGCCACAAACAAATTTGCTCATGTTCTTTGTGTAAGTGATAGTGATTCGAGCGATTCCGAGGACAGCGACNGACCCAGTAACATTTTGGATTACATCAATGCACGTGCCCAACAAAGACAGCTTAGTCCCGATGAACTGTTCCACAAAACGCTTTGCGAGAATGCACTGGAAGAAATGGAAGCTGATCTACGCGCAGCGGAGTTTAAACATGGTACCAATTGGGATGCGGATTTGTCTTGGATGCAAGAGATTACGAACGAAATCAACCCGTTCGAAAACAATCCTCCATTGGACGAAATCTTGCCAGATGAGCAATGCTGCACTGAAACTGTGCAGATTGCCCTGCCGAACTATCACTACTGGGTAAACAATGGCAACATCAAAGACATTTCATCCGAAGTTTTCGAGCAGGAGTATCTTT] [+] EMBL BX620192 [ATGGATAAACATCCAAATNTANACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAGCTTGCAGCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATGGACGAGGCCGAACGGCATTACGTGCACATCCCTGAATATATGCGAACGGATCACAGCAAACGAACGGTAGTGCCGTTCATCAATCCAATGCCCCTCAAAATGCATTTTCTCACCCACCACCGACTAAGATTGGTGACGAAAAAGATTAAACCATCGATGAAGCACATTCGGATGGCAAAATACAACTCACACACTACGAACGTCGAACTGTACCTGGCCACAAACAAATTTGCTCATGTTCTTTGTGTAAGTGATAGTGATTCGAGCGATTCCGAGGACAGCGACNGACCCAGTAACATTTTGGATTACATCAATGCACGTGCCCAACAAAGACAGCTTAGTCCCGATGAACTGTTCCACAAAACGCTTTGCGAGAATGCACTGGAAGAAATGGAAGCTGATCTACGCGCAGCGGAGTTTAAACATGGTACCAATTGGGATGCGGATTTGTCTTGGATGCAAGAGATTACGAACGAAATCAACCCGTTCGAAAACAATCCTCCATTGGACGAAATCTTGCCAGATGAGCAATGCTGCACTGAAACTGTGCAGATTGCCCTGCCGAACTATCACTACTGGGTAAACAATGGCAACATCAAAGACATTTCATCCGAAGTTTTCGAGCAGGAGTATCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2950#0 CCCCCCCCCCCACTAGCTCGCAGCAGATCGCCGAGGTTATATCCATCCACGATGGATAAA 60 consensus_2950#1 ---------------------------------------------------ATGGATAAA 9 ********* consensus_2950#0 CATCCAAATCTAAACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAGACTTGCA 120 consensus_2950#1 CATCCAAATNTANACCATAAACGATCGAAAAAGCATATTACGTTTGAGCATAG-CTTGCA 68 ********* ** **************************************** ****** consensus_2950#0 GCCGCAACGTGCCTATCTAGCAGAAATACTGGAGATAGGACGAGCCGCAACGGNATTACG 180 consensus_2950#1 GCCGCAACGTGCCTATCTAGCAGAAATACTGGAGAT-GGACGAGGCCGAACGGCATTACG 127 ************************************ ******* * ***** ****** consensus_2950#0 TGCACATNCCTGGAATATATTGCGAACGGATCNNACAGCAAACGAACGTGTAGTGCGCGC 240 consensus_2950#1 TGCACATCCCTG-AATATAT-GCGAACGGATCACA--GCAAACGAACG-GTAGTGC-CG- 180 ******* **** ******* *********** * *********** ******* ** consensus_2950#0 NTCATCAACTCCAATGCCCCTCTAAAATGCATTTTCTCACCCACCACCGACTAAGATTTG 300 consensus_2950#1 TTCATCAA-TCCAATGCCCCTC-AAAATGCATTTTCTCACCCACCACCGACTAAGATT-G 237 ******* ************* *********************************** * consensus_2950#0 GTGACGNAAACAAGTATTAAACGCATACGATGAAGCACATTTCGGATGGGTCACAATGTA 360 consensus_2950#1 GTGACGAA---AAAGATTAAAC-CAT-CGATGAAGCACATT-CGGATGG--CAAAATACA 289 ****** * ** ******* *** ************** ******* ** *** * consensus_2950#0 TCAAACTT-CCACAAGCAACGTAACGAAACGGCTCTGCAAACCTGGTTACCCCTGGGNCA 419 consensus_2950#1 ACTCACACACTACGAACGTCG-AACTGTACCTGGCCACAAACAAATTTGCTCATGTTCTT 348 * ** * ** * * ** *** ** * ***** ** * * ** consensus_2950#0 CCAAAAACACAGAAGTATTGCGTCCACTGGTTGTCCTNCT-CTGACTGGCTAACACGCTG 478 consensus_2950#1 TGTGTAAGTGATAGTGATTCGAGCGATTCCGAGGACAGCGACNGACCCAGTAACATTTTG 408 ** * * *** * * * * * * * *** ***** ** consensus_2950#0 CAGTAGGNTGGAGTNTTCN------GAAGGCGGAATGTTCCCG-CAAGCGGGACCAAGGG 531 consensus_2950#1 GATTACATCAATGCACGTGCCCAACAAAGACAGCTTAGTCCCGATGAACTGTTCCACAAA 468 * ** * *** * * * ***** * * * *** consensus_2950#0 CGTAGCAGGNGGAAAGCCCCAAGGGTAA--AACACATATCTAGGGGCAGTTNANACAGAT 589 consensus_2950#1 ACGCTTTGCGAGAATGCACTGGAAGAAATGGAAGCTGATCTACGCGCAGCGGAG-----T 523 * *** ** * * ** * * ***** * **** * * consensus_2950#0 TCGAACATTG-GCGCACAGNGTTGGGCGNCCCAAANCAGTACAAGAAACCACGGGCGCTC 648 consensus_2950#1 TTAAACATGGTACCAATTGGGATGCGGATTTGTCTTGGATGCAAGAGATTACGAACG--- 580 * ***** * * * * * ** * * ***** * *** ** consensus_2950#0 TTACGTTTGCTCCCCGGATGGCAAAAAGCAATTGGGTANTGCCCCAAACGACGAAACAAG 708 consensus_2950#1 --AAATCAACCCGTTCGAAAACAATCCTCCATTGGACGAAATCTTGCCAGATGAGCAATG 638 * * * * ** *** * ***** * ** ** * * consensus_2950#0 CCGGGCGTANTTTGGGCCGGGACATCGGAAATTGGCACACCGTTGGGGAAGACAGGANAA 768 consensus_2950#1 CTGCACTGAAACTGTGCAGATTGCCCTGCCGAACTATCACTACTGGGTAA-ACAATGGCA 697 * * * * ** ** * * * *** **** ** *** * consensus_2950#0 ACATTGGNGTAACATGNNCCTTGGCAATTCCCTCAAACTGNCTGCCACGGCCGGCGGGAA 828 consensus_2950#1 ACATCAAAGACATTTCATCCGAAGTTTTCGAGCAGGAGTATCTTT--------------- 742 **** * * * ** * * * * ** consensus_2950#0 GGCATTTTAAATCATCGCACATTGGGGACTAACCGCCACAAGATGTTGGGGTGGAACATT 888 consensus_2950#1 ------------------------------------------------------------ consensus_2950#0 GGCCGGGGANATTATCACTGGGGTCGATATGGGGAGTTTGCCAACGGAATAGCAATCTNT 948 consensus_2950#1 ------------------------------------------------------------ consensus_2950#0 TACGCGAGAGAACC 962 consensus_2950#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||