These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2959#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [AAGGGCGCGCGCGCGCGTGGGGAACGAACACAACGAGATTAGAGCCACGTGGTGTGGATGAAACAATCAAAAGTCAATCAATCTCTTTATTCACTCGCGTTCATCAGAAGAGTTCGTGGTTCGGAGGGGGGAGGGAGGCTGGTAAGCAAAAGGAAACAACAGTGGAATGCGGGTGCATTTATGTTTAAGCAAACTCTCTCGGTACGTGTTAATTAATCGTTTCTCAGTATCATCAGCGGTAGCAGAGTTTAGTGGTTAGTGGTAGTTTCCTCCGTTTGCTTCACCACCATCCCATTACTCATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACACAAACACAAGTATATAATGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATCACTCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCCCCCCTGTTAGTGACCCCAGTAGCCGATATCGGTATCATGTACGTGTTTTTTTTTCTGTTTCATTCTTTTATCTTGAATTCAGTTTGTCCCTGATA] [+] EMBL BX610217 [AAGGGCGCGCGCGCGCGTGGGGAACGAACACAACGAGATTAGAGCCACGTGGTGTGGATGAAACAATCAAAAGTCAATCAATCTCTTTATTCACTCGCGTTCATCAGAAGAGTTCGTGGTTCGGAGGGGGGAGGGAGGCTGGTAAGCAAAAGGAAACAACAGTGGAATGCGGGTGCATTTATGTTTAAGCAAACTCTCTCGGTACGTGTTAATTAATCGTTTCTCAGTATCATCAGCGGTAGCAGAGTTTAGTGGTTAGTGGTAGTTTCCTCCGTTTGCTTCACCACCATCCCATTACTCATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACACAAACACAAGTATATAATGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATCACTCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCCCCCCTGTTAGTGACCCCAGTAGCCGATATCGGTATCATGTACGTGTTTTTTTTTCTGTTTCATTCTTTTATCTTGAATTCAGTTTGTCCCTGATA] consensusID : consensus_2959#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [CAGATTCGGCACGAGGGTGGTNTCAGAGTTTNAGTGGTTAGTGGTAATTTCCTCCGTTTGCTTCACCACCATCCCATTACTCATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACAAACACAAGTATATAATGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATAACTCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCTCCCCTGTTAGTGACCCCAGTAGCCGATATCGGTATTCATGTACGTGTTTCTTTCTGTTTCATTCTTTTATCTTGANTNCAGTTTGTCCCTGATACAAAGTTCTTAACGGATATANGGATGTGACGTGTGTNNGCATGCTAGTAAAATTAATGATCTTCAATTGGNTTTTGCGCGCCAAGAAGCAAGAAGAAGAGAGAG] [+] EMBL BX619318 [CAGATTCGGCACGAGGGTGGTNTCAGAGTTTNAGTGGTTAGTGGTAATTTCCTCCGTTTGCTTCACCACCATCCCATTACTCATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACAAACACAAGTATATAATGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATAACTCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCTCCCCTGTTAGTGACCCCAGTAGCCGATATCGGTATTCATGTACGTGTTTCTTTCTGTTTCATTCTTTTATCTTGANTNCAGTTTGTCCCTGATACAAAGTTCTTAACGGATATANGGATGTGACGTGTGTNNGCATGCTAGTAAAATTAATGATCTTCAATTGGNTTTTGCGCGCCAAGAAGCAAGAAGAAGAGAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2959#0 AAGGGCGCGCGCGCGCGTGGGGAACGAACACAACGAGATTAGAGCCACGTGGTGTGGATG 60 consensus_2959#1 ------------------------------------------------------------ consensus_2959#0 AAACAATCAAAAGTCAATCAATCTCTTTATTCACTCGCGTTCATCAGAAGAGTTCGTGGT 120 consensus_2959#1 ------------------------------------------------------------ consensus_2959#0 TCGGAGGGGGGAGGGAGGCTGGTAAGCAAAAGGAAACAACAGTGGAATGCGGGTGCATTT 180 consensus_2959#1 ------------------------------------------------------------ consensus_2959#0 ATGTTTAAGCAAACTCTCTCGGTACGTGTTAATTAATCGTTTCTCAGTATCATCAGCGGT 240 consensus_2959#1 -------------------------------------CAGAT-TCGGCACGAG-GGTGGT 21 * * ** * * * * *** consensus_2959#0 AGCAGAGTTTA-GTGGTTAGTGGTAGTTTCCTCCGTTTGCTTCACCACCATCCCATTACT 299 consensus_2959#1 NTCAGAGTTTNAGTGGTTAGTGGTAATTTCCTCCGTTTGCTTCACCACCATCCCATTACT 81 ******** ************* ********************************** consensus_2959#0 CATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACACAAACACAAGTATATAA 359 consensus_2959#1 CATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACA--AACACAAGTATATAA 139 ******************************************* *************** consensus_2959#0 TGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATCAC 419 consensus_2959#1 TGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATAAC 199 ********************************************************* ** consensus_2959#0 TCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCCCCCCTGTTAGTGACCCCAGTA 479 consensus_2959#1 TCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCTCCCCTGTTAGTGACCCCAGTA 259 ************************************** ********************* consensus_2959#0 GCCGATATCGGTAT-CATGTACGTGTTTTTTTTTCTGTTTCATTCTTTTATCTTGAATTC 538 consensus_2959#1 GCCGATATCGGTATTCATGTACGTGTTTCTT--TCTGTTTCATTCTTTTATCTTGANTNC 317 ************** ************* ** *********************** * * consensus_2959#0 AGTTTGTCCCTGATA--------------------------------------------- 553 consensus_2959#1 AGTTTGTCCCTGATACAAAGTTCTTAACGGATATANGGATGTGACGTGTGTNNGCATGCT 377 *************** consensus_2959#0 ----------------------------------------------------------- consensus_2959#1 AGTAAAATTAATGATCTTCAATTGGNTTTTGCGCGCCAAGAAGCAAGAAGAAGAGAGAG 436 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||