These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [AAGAATCCCCGAGGTTTATACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACTGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCTGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACTGACTGTGCCTGACTGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTGTAAAACAAAAAAAACAAAACAACAANAAAAACACA] [+] EMBL AL932062 [AAGAATCCCCGAGGTTTATACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACTGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCTGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACTGACTGTGCCTGACTGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTGTAAAACAAAAAAAACAAAACAACAANAAAAACACA] consensusID : consensus_2962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [CCGTGAAGATGAAGCTACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACGACGGCCGACGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTTGT] [+] EMBL BM598155 [CCGTGAAGATGAAGCTACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACGACGGCCGACGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2962#0 AAGAATCCCCGAGGTTTA---TACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAG 57 consensus_2962#1 ------CCGTGAAGATGAAGCTACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAG 54 ** ** * * * *************************************** consensus_2962#0 CTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGG 117 consensus_2962#1 CTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGG 114 ************************************************************ consensus_2962#0 AGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCA 177 consensus_2962#1 AGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCA 174 ************************************************************ consensus_2962#0 AGGTGGACTGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATG 237 consensus_2962#1 AGGTGGAC-GCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATG 233 ******** *************************************************** consensus_2962#0 GATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCTGAGCGGCTCTCGCTGAACCGCGA 297 consensus_2962#1 GATGCGGCCGGCAAGCTCCAGAACGACTACGCCATC-GAGCGGCTCTCGCTGAACCGCGA 292 ************************************ *********************** consensus_2962#0 AAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAG 357 consensus_2962#1 AAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAG 352 ************************************************************ consensus_2962#0 CTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTG 417 consensus_2962#1 CTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTG 412 ************************************************************ consensus_2962#0 ATATCGATGGCGCAAAAACGACCGCCAGCTAACTGACTGTGCCTGACTGGCTGAACGATG 477 consensus_2962#1 ATATCGATGGCGCAAAAACGACCGCCAGCTAAC-GAC---GGCCGAC-GGCTGAACGATG 467 ********************************* *** * * *** ************ consensus_2962#0 CGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTT-GTAAAAC 536 consensus_2962#1 CGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTTGT----- 522 **************************************************** ** consensus_2962#0 AAAAAAAACAAAACAACAANAAAAACACA 565 consensus_2962#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||