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Anopheles gambiae
cluster # 2962 cluster # 2962       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2962#0 length = 565 sequences # 1  
consensus_2962#1 length = 522 sequences # 1  

consensusID : consensus_2962#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence
                              [AAGAATCCCCGAGGTTTATACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACTGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCTGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACTGACTGTGCCTGACTGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTGTAAAACAAAAAAAACAAAACAACAANAAAAACACA]

[+] EMBL AL932062             [AAGAATCCCCGAGGTTTATACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACTGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCTGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACTGACTGTGCCTGACTGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTGTAAAACAAAAAAAACAAAACAACAANAAAAACACA]


>consensus_2962#0 AAGAATCCCCGAGGTTTATACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTC AGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGC AGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGG TGGACTGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGAT GCGGCCGGCAAGCTCCAGAACGACTACGCCATCTGAGCGGCTCTCGCTGAACCGCGAAAA GTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTG CGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATA TCGATGGCGCAAAAACGACCGCCAGCTAACTGACTGTGCCTGACTGGCTGAACGATGCGT CGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTGTAAAACAAAA AAAACAAAACAACAANAAAAACACA



consensusID : consensus_2962#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence
                              [CCGTGAAGATGAAGCTACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACGACGGCCGACGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTTGT]

[+] EMBL BM598155             [CCGTGAAGATGAAGCTACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACGACGGCCGACGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTTGT]


>consensus_2962#1 CCGTGAAGATGAAGCTACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGC CACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGC ACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGG ACGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGG CCGGCAAGCTCCAGAACGACTACGCCATCGAGCGGCTCTCGCTGAACCGCGAAAAGTCGA AGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGA CGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGAT GGCGCAAAAACGACCGCCAGCTAACGACGGCCGACGGCTGAACGATGCGTCGTGGCCAGT CGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2962#0      AAGAATCCCCGAGGTTTA---TACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAG 57
consensus_2962#1      ------CCGTGAAGATGAAGCTACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAG 54
                            **  ** * * *   ***************************************

consensus_2962#0      CTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGG 117
consensus_2962#1      CTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGG 114
                      ************************************************************

consensus_2962#0      AGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCA 177
consensus_2962#1      AGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCA 174
                      ************************************************************

consensus_2962#0      AGGTGGACTGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATG 237
consensus_2962#1      AGGTGGAC-GCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATG 233
                      ******** ***************************************************

consensus_2962#0      GATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCTGAGCGGCTCTCGCTGAACCGCGA 297
consensus_2962#1      GATGCGGCCGGCAAGCTCCAGAACGACTACGCCATC-GAGCGGCTCTCGCTGAACCGCGA 292
                      ************************************ ***********************

consensus_2962#0      AAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAG 357
consensus_2962#1      AAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAG 352
                      ************************************************************

consensus_2962#0      CTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTG 417
consensus_2962#1      CTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTG 412
                      ************************************************************

consensus_2962#0      ATATCGATGGCGCAAAAACGACCGCCAGCTAACTGACTGTGCCTGACTGGCTGAACGATG 477
consensus_2962#1      ATATCGATGGCGCAAAAACGACCGCCAGCTAAC-GAC---GGCCGAC-GGCTGAACGATG 467
                      ********************************* ***   * * *** ************

consensus_2962#0      CGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTT-GTAAAAC 536
consensus_2962#1      CGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTTGT----- 522
                      **************************************************** **     

consensus_2962#0      AAAAAAAACAAAACAACAANAAAAACACA 565
consensus_2962#1      -----------------------------
                                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)