cluster # 2966

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Anopheles gambiae
cluster # 2966 cluster # 2966 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2966#0 length = 629 sequences # 1

consensus_2966#1 length = 300 sequences # 1

consensusID : consensus_2966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [ACCAAAAAAAGAAGAAAAAATCCAATCGAAACTAAAAGATAAAAGACATTTTTGAATTACTCTCTTCGATCCTACTGCGAAAGCTGCCCTGCAAAAAAAAAATCGCTATAAAATAGGGCAACAGGAGAGATTTACTACTGTGTTACATACACGCAAGTTTATTACGTGCTCGGCTTTAACTGTTTGTTGTATTTATGAAGTAATGCCGGGAAGCAGGGGAAACATGTCCCCCCAAAAGCAATGTGTTTAGGATTAGTGCACACGGCCGAACCACGGAGGTACACGTAACGGGTGCGTAACATTACTCGAACCATGAAACAGATGTCCCGCGTCTAGTAGAACTAAAAAAAAAACTAAAGAGAAGAAGCAGCAGTAGCAGCATCAATAGCAAAAACAAAACAGACACACACACTCGTCTAATCACCTTTCTTGCCTTAATTATGCGTTTGTTATCGATGCCTCCCGGTGCTGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGCCGGCCGGCCGGCCTTCCCCACCAAAACACACGTGGGGGGAAGAGGGAGCGTGAGATTTAAAAGGAAAGCCGACGAGTTGATGAATGAGATAAGCATTGTAGGGGTACGGCAAGAGCACCGGCGCTCT]

[+] EMBL BM587623             [ACCAAAAAAAGAAGAAAAAATCCAATCGAAACTAAAAGATAAAAGACATTTTTGAATTACTCTCTTCGATCCTACTGCGAAAGCTGCCCTGCAAAAAAAAAATCGCTATAAAATAGGGCAACAGGAGAGATTTACTACTGTGTTACATACACGCAAGTTTATTACGTGCTCGGCTTTAACTGTTTGTTGTATTTATGAAGTAATGCCGGGAAGCAGGGGAAACATGTCCCCCCAAAAGCAATGTGTTTAGGATTAGTGCACACGGCCGAACCACGGAGGTACACGTAACGGGTGCGTAACATTACTCGAACCATGAAACAGATGTCCCGCGTCTAGTAGAACTAAAAAAAAAACTAAAGAGAAGAAGCAGCAGTAGCAGCATCAATAGCAAAAACAAAACAGACACACACACTCGTCTAATCACCTTTCTTGCCTTAATTATGCGTTTGTTATCGATGCCTCCCGGTGCTGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGCCGGCCGGCCGGCCTTCCCCACCAAAACACACGTGGGGGGAAGAGGGAGCGTGAGATTTAAAAGGAAAGCCGACGAGTTGATGAATGAGATAAGCATTGTAGGGGTACGGCAAGAGCACCGGCGCTCT]




>consensus_2966#0
ACCAAAAAAAGAAGAAAAAATCCAATCGAAACTAAAAGATAAAAGACATTTTTGAATTAC
TCTCTTCGATCCTACTGCGAAAGCTGCCCTGCAAAAAAAAAATCGCTATAAAATAGGGCA
ACAGGAGAGATTTACTACTGTGTTACATACACGCAAGTTTATTACGTGCTCGGCTTTAAC
TGTTTGTTGTATTTATGAAGTAATGCCGGGAAGCAGGGGAAACATGTCCCCCCAAAAGCA
ATGTGTTTAGGATTAGTGCACACGGCCGAACCACGGAGGTACACGTAACGGGTGCGTAAC
ATTACTCGAACCATGAAACAGATGTCCCGCGTCTAGTAGAACTAAAAAAAAAACTAAAGA
GAAGAAGCAGCAGTAGCAGCATCAATAGCAAAAACAAAACAGACACACACACTCGTCTAA
TCACCTTTCTTGCCTTAATTATGCGTTTGTTATCGATGCCTCCCGGTGCTGATGGGTGCT
GAAGCAAGCCGCTGGTGCCGGCCGGCCGGCCGGCCTTCCCCACCAAAACACACGTGGGGG
GAAGAGGGAGCGTGAGATTTAAAAGGAAAGCCGACGAGTTGATGAATGAGATAAGCATTG
TAGGGGTACGGCAAGAGCACCGGCGCTCT

consensusID : consensus_2966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [GCGAGGCAGAACTCCGGCACGTTANNGAGATGTCCCGCGGTCTAGGTACNAACTAAAAAAAAAACTAAAGAGAAGAAGCAGCAGGTAGCAGCATCAAGTAGCAAAAACAAAACAGACACACACACGTCGGTCTAATCACCTTTCTTGGCCTTAAGTTATGCGTTTGTTATCGAGTGCCTCCCGGTGCTGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGACCGGACCGGCCGGCCTTCCCCACCAAAACACACGTGGGGGGAAGAGGGAGCGTGAGATTGAAAAGGAAAGCCGAGGAGNT]

[+] EMBL BX469781             [GCGAGGCAGAACTCCGGCACGTTANNGAGATGTCCCGCGGTCTAGGTACNAACTAAAAAAAAAACTAAAGAGAAGAAGCAGCAGGTAGCAGCATCAAGTAGCAAAAACAAAACAGACACACACACGTCGGTCTAATCACCTTTCTTGGCCTTAAGTTATGCGTTTGTTATCGAGTGCCTCCCGGTGCTGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGACCGGACCGGCCGGCCTTCCCCACCAAAACACACGTGGGGGGAAGAGGGAGCGTGAGATTGAAAAGGAAAGCCGAGGAGNT]




>consensus_2966#1
GCGAGGCAGAACTCCGGCACGTTANNGAGATGTCCCGCGGTCTAGGTACNAACTAAAAAA
AAAACTAAAGAGAAGAAGCAGCAGGTAGCAGCATCAAGTAGCAAAAACAAAACAGACACA
CACACGTCGGTCTAATCACCTTTCTTGGCCTTAAGTTATGCGTTTGTTATCGAGTGCCTC
CCGGTGCTGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGACCGGACCGGCCGGCCTTCCC
CACCAAAACACACGTGGGGGGAAGAGGGAGCGTGAGATTGAAAAGGAAAGCCGAGGAGNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2966#0      ACCAAAAAAAGAAGAAAAAATCCAATCGAAACTAAAAGATAAAAGACATTTTTGAATTAC 60
consensus_2966#1      ------------------------------------------------------------
                                                                                  

consensus_2966#0      TCTCTTCGATCCTACTGCGAAAGCTGCCCTGCAAAAAAAAAATCGCTATAAAATAGGGCA 120
consensus_2966#1      ------------------------------------------------------------
                                                                                  

consensus_2966#0      ACAGGAGAGATTTACTACTGTGTTACATACACGCAAGTTTATTACGTGCTCGGCTTTAAC 180
consensus_2966#1      ------------------------------------------------------------
                                                                                  

consensus_2966#0      TGTTTGTTGTATTTATGAAGTAATGCCGGGAAGCAGGGGAAACATGTCCCCCCAAAAGCA 240
consensus_2966#1      ------------------------------------------------------------
                                                                                  

consensus_2966#0      ATGTGTTTAGGATTAGTGCACACGGCCGAACCACGGAGGTACACGTAACGGGTGCGTAAC 300
consensus_2966#1      -----------------------------------------------------GCGAGGC 7
                                                                           ***   *

consensus_2966#0      ATTACTCGAAC-CATGAAACAGATGTCCCGCG-TCTAG-TA-GAACTAAAAAAAAAACTA 356
consensus_2966#1      AGAACTCCGGCACGTTANNGAGATGTCCCGCGGTCTAGGTACNAACTAAAAAAAAAACTA 67
                      *  ****   * * * *   ************ ***** **  *****************

consensus_2966#0      AAGAGAAGAAGCAGCAG-TAGCAGCATCAA-TAGCAAAAACAAAACAGACACACACACTC 414
consensus_2966#1      AAGAGAAGAAGCAGCAGGTAGCAGCATCAAGTAGCAAAAACAAAACAGACACACACACGT 127
                      ***************** ************ ***************************  

consensus_2966#0      --GTCTAATCACCTTTCTTG-CCTTAA-TTATGCGTTTGTTATCGA-TGCCTCCCGGTGC 469
consensus_2966#1      CGGTCTAATCACCTTTCTTGGCCTTAAGTTATGCGTTTGTTATCGAGTGCCTCCCGGTGC 187
                        ****************** ****** ****************** *************

consensus_2966#0      TGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGCC--GGCCGGCCGGCCTTCCCCACCAAA 527
consensus_2966#1      TGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGACCGGACCGGCCGGCCTTCCCCACCAAA 247
                      ******************************** *  * **********************

consensus_2966#0      ACACACGTGGGGGGAAGAGGGAGCGTGAGATTTAAAAGGAAAGCCGACGAGTTGATGAAT 587
consensus_2966#1      ACACACGTGGGGGGAAGAGGGAGCGTGAGATTGAAAAGGAAAGCCGAGGAGNT------- 300
                      ******************************** ************** *** *       

consensus_2966#0      GAGATAAGCATTGTAGGGGTACGGCAAGAGCACCGGCGCTCT 629
consensus_2966#1      ------------------------------------------