These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2968#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGACTTGTTGGTGACCGATGGTTGTCATCGGCTCGGGCGCGCTCGAAACGAGCCCCGGGGGCCCATTGTGTGCTGCGTTCTGGACGAGATAACATGCCCGAAAATATCGTCGACGTCGTCGTCGTCGTTGCCGCCGTTGCCTGCTGCTATCGTTTGTCAGTTTAGGGTTTAGGACAAACCGTACCGTACCGTCGCCGTGACGAGACACGCGGGTGTCTGAGTGCTGAGTGAAATACCGAAATTGTGCCGCTCCGGTGACGAACAAAAAAGATAAACTCAAGTGAACGACTGTTTGCGGTCAAAAACGATTCAACAATTCGGAACTCGGCTACCTTGTAGGAAGAGTTGCCACTGGCTCCTTAACTCCGGTGAAGAGTTTAGGGGAGTGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTTGATCGCACATTTCGTGTCTCGTGTCTCATTCTGTTATTGCCGTGGCCGTCAACGGCCCCACCAACGACTGTGATTATGGATAGTGACAGCCCGGTGCAGGAGTACTACATCAACGACTGAGCCTGGCCACCGCCCTGGGTGCGTGGCGGCAGCCCGGTGTGGAAACTGCAGACACACACCTTC] [+] EMBL BM583709 [CCGCCCACGCGTCCGCCCACGCGTCCGGGACTTGTTGGTGACCGATGGTTGTCATCGGCTCGGGCGCGCTCGAAACGAGCCCCGGGGGCCCATTGTGTGCTGCGTTCTGGACGAGATAACATGCCCGAAAATATCGTCGACGTCGTCGTCGTCGTTGCCGCCGTTGCCTGCTGCTATCGTTTGTCAGTTTAGGGTTTAGGACAAACCGTACCGTACCGTCGCCGTGACGAGACACGCGGGTGTCTGAGTGCTGAGTGAAATACCGAAATTGTGCCGCTCCGGTGACGAACAAAAAAGATAAACTCAAGTGAACGACTGTTTGCGGTCAAAAACGATTCAACAATTCGGAACTCGGCTACCTTGTAGGAAGAGTTGCCACTGGCTCCTTAACTCCGGTGAAGAGTTTAGGGGAGTGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTTGATCGCACATTTCGTGTCTCGTGTCTCATTCTGTTATTGCCGTGGCCGTCAACGGCCCCACCAACGACTGTGATTATGGATAGTGACAGCCCGGTGCAGGAGTACTACATCAACGACTGAGCCTGGCCACCGCCCTGGGTGCGTGGCGGCAGCCCGGTGTGGAAACTGCAGACACACACCTTC] consensusID : consensus_2968#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [CCGCGGACGCGTGGGCGTCGCCGTGACGAGACACGCGGGTGTCAGAGTGCTGAGTGACAAACCCGAAATTGGACTGCTCCGGTGTCGAAACTCGCCGAAAAGACAAACTCGAGTGTACGACTGTTTGCGGTCAAAAACAATTCAACAATTCAGAACTCGGCTACCTTGTAGAAAGAGGTGCTACTGACTCCTTTAACTCCGGTGAAGAGTTCAGGGGAGTGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTGC] [+] EMBL BM651604 [CCGCGGACGCGTGGGCGTCGCCGTGACGAGACACGCGGGTGTCAGAGTGCTGAGTGACAAACCCGAAATTGGACTGCTCCGGTGTCGAAACTCGCCGAAAAGACAAACTCGAGTGTACGACTGTTTGCGGTCAAAAACAATTCAACAATTCAGAACTCGGCTACCTTGTAGAAAGAGGTGCTACTGACTCCTTTAACTCCGGTGAAGAGTTCAGGGGAGTGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2968#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGACTTGTTGGTGACCGATGGTTGTCATCGGCT 60 consensus_2968#1 ------------------------------------------------------------ consensus_2968#0 CGGGCGCGCTCGAAACGAGCCCCGGGGGCCCATTGTGTGCTGCGTTCTGGACGAGATAAC 120 consensus_2968#1 ------------------------------------------------------------ consensus_2968#0 ATGCCCGAAAATATCGTCGACGTCGTCGTCGTCGTTGCCGCCGTTGCCTGCTGCTATCGT 180 consensus_2968#1 ------------------------------------------------------------ consensus_2968#0 TTGTCAGTTTAGGGTTTAGGACAAACCGTACCGTACCGTCGCCGTGACGAGACACGCGGG 240 consensus_2968#1 ---------------------CCGCGGACGCGTGGGCGTCGCCGTGACGAGACACGCGGG 39 * * ************************ consensus_2968#0 TGTCTGAGTGCTGAGTGAAATACC-GAAATTGTGCCGCTCCGGTGACGAA-----CAAAA 294 consensus_2968#1 TGTCAGAGTGCTGAGTGACAAACCCGAAATTGGACTGCTCCGGTGTCGAAACTCGCCGAA 99 **** ************* * *** ******* * ********* **** * ** consensus_2968#0 AAGATAAACTCAAGTGAACGACTGTTTGCGGTCAAAAACGATTCAACAATTCGGAACTCG 354 consensus_2968#1 AAGACAAACTCGAGTGTACGACTGTTTGCGGTCAAAAACAATTCAACAATTCAGAACTCG 159 **** ****** **** ********************** ************ ******* consensus_2968#0 GCTACCTTGTAGGAAGAGTTGCCACTGGCTCCTT-AACTCCGGTGAAGAGTTTAGGGGAG 413 consensus_2968#1 GCTACCTTGTAGAAAGAGGTGCTACTGACTCCTTTAACTCCGGTGAAGAGTTCAGGGGAG 219 ************ ***** *** **** ****** ***************** ******* consensus_2968#0 TGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTTGATCGCACATTTCGTGTCTCG 473 consensus_2968#1 TGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTGC-------------------- 259 ************************************** consensus_2968#0 TGTCTCATTCTGTTATTGCCGTGGCCGTCAACGGCCCCACCAACGACTGTGATTATGGAT 533 consensus_2968#1 ------------------------------------------------------------ consensus_2968#0 AGTGACAGCCCGGTGCAGGAGTACTACATCAACGACTGAGCCTGGCCACCGCCCTGGGTG 593 consensus_2968#1 ------------------------------------------------------------ consensus_2968#0 CGTGGCGGCAGCCCGGTGTGGAAACTGCAGACACACACCTTC 635 consensus_2968#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||