These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1481 fasta sequence [GCNAAGAATCCGACGAGTGAGAGACACAAACACACGCACACACTTCACACTGACATACAAGTCGTCGAAATCAGGGACTAAAACTAAAGATAGACGAATATACGCCTAGGGATTGTGTTGTTCGTTTATNGTAGTAGATGTAGATGGTACTTCTCGTCGGCGCGCACTTGGTTTGTGTGTGTGTGTGTGNTGTGTGTAGTANTAGTAAACCGGGCAGGGCTGTGACACGGGCGAGCAGGGTTNCAGTTTGAGTTGAGGTAGANCACAGGAAAGGAGTGCAACAGNAGCAGAGGCAGAGGNCAGGACTNTGGNNGAGCGGCGGCAANGGGAGGGGNATCGACGGNGANAGGTNACGGGGGAGGGAGNTCGGACNTGGGGCGGAGGAANANNGNNGGCCGGGGGGGNCNACGAAAGGGCAGNANCGACGGGGGGGGNCGAGACAACGGGGGGGCNANCGGAGGCNGCGCACGCGGATTNGNGCAGGCGACGTNNCACGCCCGANCCNGATANGGCGGNTAACTAGGTTCAGGNTAGACCCGACTGNNCCCNAAACNGCGGACAGGACAAGGCANGAGNNCAGGGCAGCGACACCAAACAGGNGGCNGACAACGGCGCGCCGCNGGNNNAAANAGGCACCCGTCNGNGCGGCNGGNGATGCGGTAGNGNGCNCNNCNCGGGTNAGCGNGGGACGGAGCCGNGCCGACNGCCCGGCNACGCGGCCGNGGCCNNACGANCNAGGCGAGACGGGGCNCACAAGACNCNGGNAGAGGGGAGNAAGAGNCCNGGGAANGAAGAGGGAACGCGCGAGAGGGGAAAGCNACANNGCCAGGCAANGCGAGCNCTATGNCGNCCNGAGGAGGGNGGGGGAAAAGANCGCCANCGCGGGTNNNNNCGCGCGGCGGAAGCTCNGGACCAGGCCGGGAGGCNNCCGGANACGAGACACAGCNACGGCGGACNACAGNATGGNANGGAGGTGCAGCAGANGGCGGGNGANACCACGAGAGCGANCAGCGCGGGCCGGNCGAAGANCNCAGGGCNAGCGGGGACGNCGCGCGCAAGGCCGGGGAACAGGGGAGGGNAGGNACCGNAGGAANGGGGNGCNGACACTTCCGCGAGTGCNNANTCATCTNGCCTGCTCCNGACGGGNNNAGGGNCGCTGGAGCTTATNGGNGNTCGNCGGCCTANNTCGACTTTCCGATGTCATGTTCTGATCTGNGCGGGCTNNNCGGNNNCTGNNGAGGTGCAGNCTGCNGGGCNGCCATAGGTGCCGGGTNGTTTNGGCGGTTGNCCCTAGTGGNGACGTGNAGCNAGTGTGACCGGGCTGNAGCAGTCCGAGNATNCCCCTTGCGGTGGGTGGTGGGAGGCGATGNCCAGTNGCTCCTCNNNNNTGAGTGTNCCGGGGTGGGATCGGTGCGATGGAGGGCGGCGCAGGGTTGCGCGTCGATTNACCCANCCGGNATCGCCGGCNGGGCNTTNCNGAG] [+] EMBL BX466095 [GCNAAGAATCCGACGAGTGAGAGACACAAACACACGCACACACTTCACACTGACATACAAGTCGTCGAAATCAGGGACTAAAACTAAAGATAGACGAATATACGCCTAGGGATTGTGTTGTTCGTTTATNGTAGTAGATGTAGATGGTACTTCTCGTCGGCGCGCACTTGGTTTGTGTGTGTGTGTGTGNTGTGTGTAGTANTAGTAAACCGGGCAGGGCTGTGACACGGGCGAGCAGGGTTNCAGTTTGAGTTGAGGTAGANCACAGGAAAGGAGTGCAACAGNAGCAGAGGCAGAGGNCAGGACTNTGGNNGAGCGGCGGCAANGGGAGGGGNATCGACGGNGANAGGTNACGGGGGAGGGAGNTCGGACNTGGGGCGGAGGAANANNGNNGGCCGGGGGGGNCNACGAAAGGGCAGNANCGACGGGGGGGGNCGAGACAACGGGGGGGCNANCGGAGGCNGCGCACGCGGATTNGNGCAGGCGACGTNNCACGCCCGANCCNGATANGGCGGNTAACTAGGTTCAGGNTAGACCCGACTGNNCCCNAAACNGCGGACAGGACAAGGCANGAGNNCAGGGCAGCGACACCAAACAGGNGGCNGACAACGGCGCGCCGCNGGNNNAAANAGGCACCCGTCNGNGCGGCNGGNGATGCGGTAGNGNGCNCNNCNCGGGTNAGCGNGGGACGGAGCCGNGCCGACNGCCCGGCNACGCGGCCGNGGCCNNACGANCNAGGCGAGACGGGGCNCACAAGACNCNGGNAGAGGGGAGNAAGAGNCCNGGGAANGAAGAGGGAACGCGCGAGAGGGGAAAGCNACANNGCCAGGCAANGCGAGCNCTATGNCGNCCNGAGGAGGGNGGGGGAAAAGANCGCCANCGCGGGTNNNNNCGCGCGGCGGAAGCTCNGGACCAGGCCGGGAGGCNNCCGGANACGAGACACAGCNACGGCGGACNACAGNATGGNANGGAGGTGCAGCAGANGGCGGGNGANACCACGAGAGCGANCAGCGCGGGCCGGNCGAAGANCNCAGGGCNAGCGGGGACGNCGCGCGCAAGGCCGGGGAACAGGGGAGGGNAGGNACCGNAGGAANGGGGNGCNGACACTTCCGCGAGTGCNNANTCATCTNGCCTGCTCCNGACGGGNNNAGGGNCGCTGGAGCTTATNGGNGNTCGNCGGCCTANNTCGACTTTCCGATGTCATGTTCTGATCTGNGCGGGCTNNNCGGNNNCTGNNGAGGTGCAGNCTGCNGGGCNGCCATAGGTGCCGGGTNGTTTNGGCGGTTGNCCCTAGTGGNGACGTGNAGCNAGTGTGACCGGGCTGNAGCAGTCCGAGNATNCCCCTTGCGGTGGGTGGTGGGAGGCGATGNCCAGTNGCTCCTCNNNNNTGAGTGTNCCGGGGTGGGATCGGTGCGATGGAGGGCGGCGCAGGGTTGCGCGTCGATTNACCCANCCGGNATCGCCGGCNGGGCNTTNCNGAG] consensusID : consensus_2971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [CAAAAAGGGACAGCAAATGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGTTGAAACAAGAAAAAGCGGTAGCTGATTGTGTGTGTGTGTGTCTATGTTAAAAGGAAATGAGATGAAAAAACAACCACACAGAGACACAAACACACGCACACATTCACACTGACATACAAGTCGTCGAAATCAGGGACTAAAACTAAAGATAGACGAATATACGCCTAGGATTGTGTTGTTCGTTTTTGTATAGATGTAGATGTACTTCTCGTCGCGCGCACTTGTTTGTGTGTGTGTGTGTGTGTGTGTATATATAAACGGAGGCTTAACGGCAGAGGTTTCATTGATTGATAGACAAGAAGATGCAACAAACAAACAAACAGATATTTTACGCACACTAGGCTCACTCACTACGGTTGATTTTCTT] [+] EMBL BX616059 [CAAAAAGGGACAGCAAATGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGTTGAAACAAGAAAAAGCGGTAGCTGATTGTGTGTGTGTGTGTCTATGTTAAAAGGAAATGAGATGAAAAAACAACCACACAGAGACACAAACACACGCACACATTCACACTGACATACAAGTCGTCGAAATCAGGGACTAAAACTAAAGATAGACGAATATACGCCTAGGATTGTGTTGTTCGTTTTTGTATAGATGTAGATGTACTTCTCGTCGCGCGCACTTGTTTGTGTGTGTGTGTGTGTGTGTGTATATATAAACGGAGGCTTAACGGCAGAGGTTTCATTGATTGATAGACAAGAAGATGCAACAAACAAACAAACAGATATTTTACGCACACTAGGCTCACTCACTACGGTTGATTTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2971#0 GCNAAGAATCCGACGAGTGAGAGACACAAACACACGCACACACTTCACACTGACATACAA 60 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 GTCGTCGAAATCAGGGACTAAAACTAAAGATAGACGAATATACGCCTAGGGATTGTGTTG 120 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 TTCGTTTATNGTAGTAGATGTAGATGGTACTTCTCGTCGGCGCGCACTTGGTTTGTGTGT 180 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 GTGTGTGTGNTGTGTGTAGTANTAGTAAACCGGGCAGGGCTGTGACACGGGCGAGCAGGG 240 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 TTNCAGTTTGAGTTGAGGTAGANCACAGGAAAGGAGTGCAACAGNAGCAGAGGCAGAGGN 300 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 CAGGACTNTGGNNGAGCGGCGGCAANGGGAGGGGNATCGACGGNGANAGGTNACGGGGGA 360 consensus_2971#1 ---------CAAAAAGGGACAGCAAATGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 51 ** * * **** ** * * ** * ** ** * * ** consensus_2971#0 GGGAGNTCGGACNTGGGGCGGAGGAANANNGNNGGCCGGGGGGGNCNACGAAAGGGCAGN 420 consensus_2971#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGTTGA-----AACAAGAAAAAGCGGT 106 * *** * * * *** * * * * * * **** ** * consensus_2971#0 ANCGACGGGGGGGGNCGAGACAACGGGGGGGCNANCGGAGGCNGCGCACGCGGATTNGNG 480 consensus_2971#1 AGCTGATTGTGTGTGTGTG-TGTCTATGTTAAAAGGAAATGAGATGAAAAAACAACCACA 165 * * * * * * * * * * * * * * * consensus_2971#0 CAGGCGACGTNNCACGCCCGANCCNGATANGGCGGNTAACTAGGTTCAGGNTAGACCCGA 540 consensus_2971#1 CAGA-GACACAA-ACACACGCACACATTCACACTGACATACAAGTC---GTCGAAATCA- 219 *** *** ** * ** * * * * * * ** * * * consensus_2971#0 CTGNNCCCNAAACNGCGGACAGGACAAGGCANGAGNNCAGGGCAGCGACACCAAACAGGN 600 consensus_2971#1 --GGGACTAAAACTAAAGATAGACGAATATACG--CCTAGGATTGTGTTGTTCGTTTTTG 275 * * **** ** ** ** * * *** * * consensus_2971#0 GGCNGACAACGGCGCGCCGCNGGNNNAAANAGGCACCCGTCNGNGCGGCNGGNGATGCGG 660 consensus_2971#1 TATAGATGTAGATGTACTTCTCGTCG---CGCGCACTTGTTTGTGTGTGTGTGTGTGTGT 332 ** * * * * * **** ** * * * * ** * consensus_2971#0 TAGNGNGCNCNNCNCGGGTNAGCGNGGGACGGAGCCGNGCCGACNGCCCGGCNACGCGGC 720 consensus_2971#1 GTGTATATATAA-ACGGAGGCTTAACGGCAGAGGTTTCATTGATTGATAGACAA-GAAGA 390 * *** ** * * ** * * * * * * consensus_2971#0 CGNGGCCNNACGANCNAGGCGAGACGGGGCNCACAAGACNCNGGNAGAGGGGAGNAAGAG 780 consensus_2971#1 TGCAAC-AAACAAACAAACAGATATTTTACGCACACTAGGCTCACTCACTACGGTTGATT 449 * * ** * * * ** * * **** * * * * consensus_2971#0 NCCNGGGAANGAAGAGGGAACGCGCGAGAGGGGAAAGCNACANNGCCAGGCAANGCGAGC 840 consensus_2971#1 TTCTT------------------------------------------------------- 454 * consensus_2971#0 NCTATGNCGNCCNGAGGAGGGNGGGGGAAAAGANCGCCANCGCGGGTNNNNNCGCGCGGC 900 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 GGAAGCTCNGGACCAGGCCGGGAGGCNNCCGGANACGAGACACAGCNACGGCGGACNACA 960 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 GNATGGNANGGAGGTGCAGCAGANGGCGGGNGANACCACGAGAGCGANCAGCGCGGGCCG 1020 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 GNCGAAGANCNCAGGGCNAGCGGGGACGNCGCGCGCAAGGCCGGGGAACAGGGGAGGGNA 1080 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 GGNACCGNAGGAANGGGGNGCNGACACTTCCGCGAGTGCNNANTCATCTNGCCTGCTCCN 1140 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 GACGGGNNNAGGGNCGCTGGAGCTTATNGGNGNTCGNCGGCCTANNTCGACTTTCCGATG 1200 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 TCATGTTCTGATCTGNGCGGGCTNNNCGGNNNCTGNNGAGGTGCAGNCTGCNGGGCNGCC 1260 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 ATAGGTGCCGGGTNGTTTNGGCGGTTGNCCCTAGTGGNGACGTGNAGCNAGTGTGACCGG 1320 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 GCTGNAGCAGTCCGAGNATNCCCCTTGCGGTGGGTGGTGGGAGGCGATGNCCAGTNGCTC 1380 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 CTCNNNNNTGAGTGTNCCGGGGTGGGATCGGTGCGATGGAGGGCGGCGCAGGGTTGCGCG 1440 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 TCGATTNACCCANCCGGNATCGCCGGCNGGGCNTTNCNGAG 1481 consensus_2971#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||