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Anopheles gambiae
cluster # 2989 cluster # 2989       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2989#0 length = 498 sequences # 1  
consensus_2989#1 length = 317 sequences # 1  

consensusID : consensus_2989#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence
                              [CCGGGAGATGCGTATCAACATTCAGAGGCTAACAGAGATGGGCTACCCGGAACAGAGCGCCCGGCTTGCGCTGGAAATTTGCGCCAACATTCCGGACCGGGCCGTCGAGTACCTGCTGTCGGAGATGGGCGGCGGCAGCGACATGTCGTTCGCGCTGACAGCCGCCGCCCAGCTGCAGCAGCAGCAGCAGCAGCAGCAGGGACAGGGTGCCGGTATCGGTGGTGCGGCGGCGGCCCAGTCGGGCGACGCCAACCCGCTCGCCTTCCTGCGCGACAATCCCGTGTTCGAGGACATGCGCCGCATCCTGCGGGACGATCCGTCGATGCTGCCGTACCTGATGCGCCGGATGCAGGCGAGCAACCCGGACCTGCTGAACATCATAGCCGAGTATCAGGACGAGTTTCTGGCGCTGATCAACGAGGGCAGCAACGCGGGCGGCCAGCCGGCCGGCCAGCCGATGTCGCGCGAGCTGGAGAGCATTGCGGCGGCGATGGTCAA]

[+] EMBL BM593608             [CCGGGAGATGCGTATCAACATTCAGAGGCTAACAGAGATGGGCTACCCGGAACAGAGCGCCCGGCTTGCGCTGGAAATTTGCGCCAACATTCCGGACCGGGCCGTCGAGTACCTGCTGTCGGAGATGGGCGGCGGCAGCGACATGTCGTTCGCGCTGACAGCCGCCGCCCAGCTGCAGCAGCAGCAGCAGCAGCAGCAGGGACAGGGTGCCGGTATCGGTGGTGCGGCGGCGGCCCAGTCGGGCGACGCCAACCCGCTCGCCTTCCTGCGCGACAATCCCGTGTTCGAGGACATGCGCCGCATCCTGCGGGACGATCCGTCGATGCTGCCGTACCTGATGCGCCGGATGCAGGCGAGCAACCCGGACCTGCTGAACATCATAGCCGAGTATCAGGACGAGTTTCTGGCGCTGATCAACGAGGGCAGCAACGCGGGCGGCCAGCCGGCCGGCCAGCCGATGTCGCGCGAGCTGGAGAGCATTGCGGCGGCGATGGTCAA]


>consensus_2989#0 CCGGGAGATGCGTATCAACATTCAGAGGCTAACAGAGATGGGCTACCCGGAACAGAGCGC CCGGCTTGCGCTGGAAATTTGCGCCAACATTCCGGACCGGGCCGTCGAGTACCTGCTGTC GGAGATGGGCGGCGGCAGCGACATGTCGTTCGCGCTGACAGCCGCCGCCCAGCTGCAGCA GCAGCAGCAGCAGCAGCAGGGACAGGGTGCCGGTATCGGTGGTGCGGCGGCGGCCCAGTC GGGCGACGCCAACCCGCTCGCCTTCCTGCGCGACAATCCCGTGTTCGAGGACATGCGCCG CATCCTGCGGGACGATCCGTCGATGCTGCCGTACCTGATGCGCCGGATGCAGGCGAGCAA CCCGGACCTGCTGAACATCATAGCCGAGTATCAGGACGAGTTTCTGGCGCTGATCAACGA GGGCAGCAACGCGGGCGGCCAGCCGGCCGGCCAGCCGATGTCGCGCGAGCTGGAGAGCAT TGCGGCGGCGATGGTCAA



consensusID : consensus_2989#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence
                              [AGAATCGGCACGAGGGTTTGATCCGTCGATCTGCCGTACTCGATGCGCCGGATGCAGGCGAGCAACCCGGACCTGCTGAACATCATAGCCGAGTATCAGGACGAGTTTCTGGCGCTGATCAACGAGGGCAGCAACGCGGGCGGCCAGCCGGCCGGCCAGCCGATGTCGCGCGAGCTGGAGAGCATTGCGGCGGCGATAGTCAACAGCCTGACGCCGTCGGACATGGACGCGATCGAGCGGCTGAAAGGCGCTCGGCTACCCGGAGCACCTCGTCATCCAGGCGTACATTGCGTGCGAGCGGGACGAGTACAGATGCG]

[+] EMBL BX469398             [AGAATCGGCACGAGGGTTTGATCCGTCGATCTGCCGTACTCGATGCGCCGGATGCAGGCGAGCAACCCGGACCTGCTGAACATCATAGCCGAGTATCAGGACGAGTTTCTGGCGCTGATCAACGAGGGCAGCAACGCGGGCGGCCAGCCGGCCGGCCAGCCGATGTCGCGCGAGCTGGAGAGCATTGCGGCGGCGATAGTCAACAGCCTGACGCCGTCGGACATGGACGCGATCGAGCGGCTGAAAGGCGCTCGGCTACCCGGAGCACCTCGTCATCCAGGCGTACATTGCGTGCGAGCGGGACGAGTACAGATGCG]


>consensus_2989#1 AGAATCGGCACGAGGGTTTGATCCGTCGATCTGCCGTACTCGATGCGCCGGATGCAGGCG AGCAACCCGGACCTGCTGAACATCATAGCCGAGTATCAGGACGAGTTTCTGGCGCTGATC AACGAGGGCAGCAACGCGGGCGGCCAGCCGGCCGGCCAGCCGATGTCGCGCGAGCTGGAG AGCATTGCGGCGGCGATAGTCAACAGCCTGACGCCGTCGGACATGGACGCGATCGAGCGG CTGAAAGGCGCTCGGCTACCCGGAGCACCTCGTCATCCAGGCGTACATTGCGTGCGAGCG GGACGAGTACAGATGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2989#0      CCGGGAGATGCGTATCAACATTCAGAGGCTAACAGAGATGGGCTACCCGGAACAGAGCGC 60
consensus_2989#1      ------------------------------------------------------------
                                                                                  

consensus_2989#0      CCGGCTTGCGCTGGAAATTTGCGCCAACATTCCGGACCGGGCCGTCGAGTACCTGCTGTC 120
consensus_2989#1      ------------------------------------------------------------
                                                                                  

consensus_2989#0      GGAGATGGGCGGCGGCAGCGACATGTCGTTCGCGCTGACAGCCGCCGCCCAGCTGCAGCA 180
consensus_2989#1      ------------------------------------------------------------
                                                                                  

consensus_2989#0      GCAGCAGCAGCAGCAGCAGGGACAGGGTGCCGGTATCGGTGGTGCGGCGGCGGCCCAGTC 240
consensus_2989#1      ------------------------------------------------------------
                                                                                  

consensus_2989#0      GGGCGACGCCAACCCGCTCGCCTTCCTGCGCGACAATCCCGTGTTCGAGGACATGCGCCG 300
consensus_2989#1      ----------------------------------------------------AGAATCGG 8
                                                                          *    * *

consensus_2989#0      CATCCTGCGGGACGATCCGTCGATGCTGCCGTACCTGATGCGCCGGATGCAGGCGAGCAA 360
consensus_2989#1      CA--CGAGGGTTTGATCCGTCGAT-CTGCCGTACTCGATGCGCCGGATGCAGGCGAGCAA 65
                      **  *   **   *********** *********  ************************

consensus_2989#0      CCCGGACCTGCTGAACATCATAGCCGAGTATCAGGACGAGTTTCTGGCGCTGATCAACGA 420
consensus_2989#1      CCCGGACCTGCTGAACATCATAGCCGAGTATCAGGACGAGTTTCTGGCGCTGATCAACGA 125
                      ************************************************************

consensus_2989#0      GGGCAGCAACGCGGGCGGCCAGCCGGCCGGCCAGCCGATGTCGCGCGAGCTGGAGAGCAT 480
consensus_2989#1      GGGCAGCAACGCGGGCGGCCAGCCGGCCGGCCAGCCGATGTCGCGCGAGCTGGAGAGCAT 185
                      ************************************************************

consensus_2989#0      TGCGGCGGCGATGGTCAA------------------------------------------ 498
consensus_2989#1      TGCGGCGGCGATAGTCAACAGCCTGACGCCGTCGGACATGGACGCGATCGAGCGGCTGAA 245
                      ************ *****                                          

consensus_2989#0      ------------------------------------------------------------
consensus_2989#1      AGGCGCTCGGCTACCCGGAGCACCTCGTCATCCAGGCGTACATTGCGTGCGAGCGGGACG 305
                                                                                  

consensus_2989#0      ------------
consensus_2989#1      AGTACAGATGCG 317
                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)