cluster # 3019

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Anopheles gambiae
cluster # 3019 cluster # 3019 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3019#0 length = 629 sequences # 1

consensus_3019#1 length = 513 sequences # 1

consensusID : consensus_3019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [CACGCGTCCGAAACAAACACAAAAATGTACCTTAACAACAATTAGAAATATCTTTTGCGAAAGGCAAATAAGCGCACAGTTTTCAATGGTTTAGGGCGCAATGTTATCTCATTGATTGAATCTAGCGTTCTGTGTGTTGCTATTTCGAAGGCAACAAAGTGCAACAAAAAGCAAAAGGCAGCTCGAAGAGAGAAAGCAAGGGAAATCATCTGCTGCAGCAAGATTCTATTATTGTTCATTTGCGTAGACAATTTTCAGAACAGAAATTACATTTCCCGTGCTTGCGCTCGTGCGATGGACAACACACCGGAATGTTAAAACGCAGCGAGGAAGAATCACTACATCATGAATCTGCAATCGCTGTTTCAGGATTTTAATCCCAGTAAATTTGTTGTTCATTGCTGTTTGTTCACCTTTACCATATTGTTCTGTCTCCGTTTGGACGGATTCATCGATTGGCCCTATTGGGTTGTGTTTGTGCCGCTATGGGTGTGGAAATCGATTGCAACGCTCGGGGCAATAGTGGGAGCCATTGTTTGGTGCCGTCACCCACACTACAGAGTCGAAGGTGACTCGTACTCACACTTCAAAGCGATGCTAATATCGCTTTTCGTTGCACTTGATTTTGC]

[+] EMBL BM651233             [CACGCGTCCGAAACAAACACAAAAATGTACCTTAACAACAATTAGAAATATCTTTTGCGAAAGGCAAATAAGCGCACAGTTTTCAATGGTTTAGGGCGCAATGTTATCTCATTGATTGAATCTAGCGTTCTGTGTGTTGCTATTTCGAAGGCAACAAAGTGCAACAAAAAGCAAAAGGCAGCTCGAAGAGAGAAAGCAAGGGAAATCATCTGCTGCAGCAAGATTCTATTATTGTTCATTTGCGTAGACAATTTTCAGAACAGAAATTACATTTCCCGTGCTTGCGCTCGTGCGATGGACAACACACCGGAATGTTAAAACGCAGCGAGGAAGAATCACTACATCATGAATCTGCAATCGCTGTTTCAGGATTTTAATCCCAGTAAATTTGTTGTTCATTGCTGTTTGTTCACCTTTACCATATTGTTCTGTCTCCGTTTGGACGGATTCATCGATTGGCCCTATTGGGTTGTGTTTGTGCCGCTATGGGTGTGGAAATCGATTGCAACGCTCGGGGCAATAGTGGGAGCCATTGTTTGGTGCCGTCACCCACACTACAGAGTCGAAGGTGACTCGTACTCACACTTCAAAGCGATGCTAATATCGCTTTTCGTTGCACTTGATTTTGC]




>consensus_3019#0
CACGCGTCCGAAACAAACACAAAAATGTACCTTAACAACAATTAGAAATATCTTTTGCGA
AAGGCAAATAAGCGCACAGTTTTCAATGGTTTAGGGCGCAATGTTATCTCATTGATTGAA
TCTAGCGTTCTGTGTGTTGCTATTTCGAAGGCAACAAAGTGCAACAAAAAGCAAAAGGCA
GCTCGAAGAGAGAAAGCAAGGGAAATCATCTGCTGCAGCAAGATTCTATTATTGTTCATT
TGCGTAGACAATTTTCAGAACAGAAATTACATTTCCCGTGCTTGCGCTCGTGCGATGGAC
AACACACCGGAATGTTAAAACGCAGCGAGGAAGAATCACTACATCATGAATCTGCAATCG
CTGTTTCAGGATTTTAATCCCAGTAAATTTGTTGTTCATTGCTGTTTGTTCACCTTTACC
ATATTGTTCTGTCTCCGTTTGGACGGATTCATCGATTGGCCCTATTGGGTTGTGTTTGTG
CCGCTATGGGTGTGGAAATCGATTGCAACGCTCGGGGCAATAGTGGGAGCCATTGTTTGG
TGCCGTCACCCACACTACAGAGTCGAAGGTGACTCGTACTCACACTTCAAAGCGATGCTA
ATATCGCTTTTCGTTGCACTTGATTTTGC

consensusID : consensus_3019#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [ATCCCCCCCAGGTTAAAATGTACCTTAACAACAATTCAGCAAATATCTTTTACNAAAGGTAAATAACCCACCGTTCTCAATGGTTTAGCCGCAATGTTATCTCATTGATTGAACGCTAGCGTTCTGTGTGTTCGCTATTCTCCGCAAGGCAACAAAGCTGACAACAAAAGCAAAAGGCAGCTCGAAGAGAGAACAGCAAGGGAACACTATCTGCTGCAGCAAGATTCTATTATTGTCTCATTTGCGTAGACAACTTTTCAGAACAGCAAATTACACTTTCCCGTGCCTCTGCGCTCGTGCGATGGACAACACACCGGCAATGTTAAACACGCAGCGAGGAACCAACTCACTACATCATGAATCTGCAATCGCTGTTTCAGGATTTTAATCCCAGTAAATTTGTNGTTCACTTGCTGTTGTTCACCTTTACCATATNTGTNCTGTCTCCGCTTTGGACGGATTCATCGATTGGCCCTATTGGCGTTCGTGTNTCTGTGCCGCTATGGGCTGTGG]

[+] EMBL AL932256             [ATCCCCCCCAGGTTAAAATGTACCTTAACAACAATTCAGCAAATATCTTTTACNAAAGGTAAATAACCCACCGTTCTCAATGGTTTAGCCGCAATGTTATCTCATTGATTGAACGCTAGCGTTCTGTGTGTTCGCTATTCTCCGCAAGGCAACAAAGCTGACAACAAAAGCAAAAGGCAGCTCGAAGAGAGAACAGCAAGGGAACACTATCTGCTGCAGCAAGATTCTATTATTGTCTCATTTGCGTAGACAACTTTTCAGAACAGCAAATTACACTTTCCCGTGCCTCTGCGCTCGTGCGATGGACAACACACCGGCAATGTTAAACACGCAGCGAGGAACCAACTCACTACATCATGAATCTGCAATCGCTGTTTCAGGATTTTAATCCCAGTAAATTTGTNGTTCACTTGCTGTTGTTCACCTTTACCATATNTGTNCTGTCTCCGCTTTGGACGGATTCATCGATTGGCCCTATTGGCGTTCGTGTNTCTGTGCCGCTATGGGCTGTGG]




>consensus_3019#1
ATCCCCCCCAGGTTAAAATGTACCTTAACAACAATTCAGCAAATATCTTTTACNAAAGGT
AAATAACCCACCGTTCTCAATGGTTTAGCCGCAATGTTATCTCATTGATTGAACGCTAGC
GTTCTGTGTGTTCGCTATTCTCCGCAAGGCAACAAAGCTGACAACAAAAGCAAAAGGCAG
CTCGAAGAGAGAACAGCAAGGGAACACTATCTGCTGCAGCAAGATTCTATTATTGTCTCA
TTTGCGTAGACAACTTTTCAGAACAGCAAATTACACTTTCCCGTGCCTCTGCGCTCGTGC
GATGGACAACACACCGGCAATGTTAAACACGCAGCGAGGAACCAACTCACTACATCATGA
ATCTGCAATCGCTGTTTCAGGATTTTAATCCCAGTAAATTTGTNGTTCACTTGCTGTTGT
TCACCTTTACCATATNTGTNCTGTCTCCGCTTTGGACGGATTCATCGATTGGCCCTATTG
GCGTTCGTGTNTCTGTGCCGCTATGGGCTGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3019#0      CACGCGTCCGAAACAAACACAAAAATGTACCTTAACAACAATTAG--AAATATCTTTTGC 58
consensus_3019#1      -----ATCCCCCCCAGGTT--AAAATGTACCTTAACAACAATTCAGCAAATATCTTTTAC 53
                            ***    **      **********************    *********** *

consensus_3019#0      GAAAGGCAAATAAGCGCACAGTTTTCAATGGTTTAGGGCGCAATGTTATCTCATTGATTG 118
consensus_3019#1      NAAAGGTAAATAACC-CACCGTTCTCAATGGTTTAGC-CGCAATGTTATCTCATTGATTG 111
                       ***** ****** * *** *** ************  **********************

consensus_3019#0      AAT-CTAGCGTTCTGTGTGTT-GCTATTTCG---AAGGCAACAAAG-TGCAACAAAAAGC 172
consensus_3019#1      AACGCTAGCGTTCTGTGTGTTCGCTATTCTCCGCAAGGCAACAAAGCTGACAACAAAAGC 171
                      **  ***************** ******      ************ **  *  ******

consensus_3019#0      AAAAGGCAGCTCGAAGAGAGAA-AGCAAGGGAA-ATCATCTGCTGCAGCAAGATTCTATT 230
consensus_3019#1      AAAAGGCAGCTCGAAGAGAGAACAGCAAGGGAACACTATCTGCTGCAGCAAGATTCTATT 231
                      ********************** ********** *  ***********************

consensus_3019#0      ATTGT-TCATTTGCGTAGACAA-TTTTCAGAACAG-AAATTACA-TTTCCCGTGCTT--G 284
consensus_3019#1      ATTGTCTCATTTGCGTAGACAACTTTTCAGAACAGCAAATTACACTTTCCCGTGCCTCTG 291
                      ***** **************** ************ ******** ********** *  *

consensus_3019#0      CGCTCGTGCGATGGACAACACACCGG-AATGTTAAA-ACGCAGCGAGGAA--GAATCACT 340
consensus_3019#1      CGCTCGTGCGATGGACAACACACCGGCAATGTTAAACACGCAGCGAGGAACCAACTCACT 351
                      ************************** ********* *************   * *****

consensus_3019#0      ACATCATGAATCTGCAATCGCTGTTTCAGGATTTTAATCCCAGTAAATTTGTTGTTCA-T 399
consensus_3019#1      ACATCATGAATCTGCAATCGCTGTTTCAGGATTTTAATCCCAGTAAATTTGTNGTTCACT 411
                      **************************************************** ***** *

consensus_3019#0      TGCTGTTTGTTCACCTTTACCATATT-GTTCTGTCTCCG-TTTGGACGGATTCATCGATT 457
consensus_3019#1      TGCTGTT-GTTCACCTTTACCATATNTGTNCTGTCTCCGCTTTGGACGGATTCATCGATT 470
                      ******* *****************  ** ********* ********************

consensus_3019#0      GGCCCTATTGG-GTT---GTGTTTGTGCCGCTATGGG-TGTGGAAATCGATTGCAACGCT 512
consensus_3019#1      GGCCCTATTGGCGTTCGTGTNTCTGTGCCGCTATGGGCTGTGG----------------- 513
                      *********** ***   ** * ************** *****                 

consensus_3019#0      CGGGGCAATAGTGGGAGCCATTGTTTGGTGCCGTCACCCACACTACAGAGTCGAAGGTGA 572
consensus_3019#1      ------------------------------------------------------------
                                                                                  

consensus_3019#0      CTCGTACTCACACTTCAAAGCGATGCTAATATCGCTTTTCGTTGCACTTGATTTTGC 629
consensus_3019#1      ---------------------------------------------------------