cluster # 3026

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Anopheles gambiae
cluster # 3026 cluster # 3026 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3026#0 length = 730 sequences # 1

consensus_3026#1 length = 460 sequences # 1

consensusID : consensus_3026#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 730
fasta sequence

                              [ACAGCAATTGTAGCAGTGGCAAGCGGCGCAGAAAACTGGAAGCCACAGACGTGCAGCCAAAAATCCCGACCGGCCATCCGCCCGTACCTGGCTGCTACTGATGCAAAGCCCAACCACAACACCATCATCATTATCATCATTATCATTGCGCGGTGCGCATCAGCTCAGCCGAGCACGGAACGCTGGCGCGCGCGTGTGGATAACGCAGCATGGAGCTACAGTAAATTAGTTGGTTCAGCGTGAAGAAGATTAATCGCGTGAAAAGAAACGACCCACTACAGAGTACAGTGCGCGGCGGGACATCGGGAGCGGCATCGGTGTCATAGTAGATCGCGTAGAATTAAAGCGCCATTGATAAGACACGGCGCACGCTAGAAAAATCCAGACCTTGTTGTGGACGTACATTCCGCACCGGCAGCGGGAGCAGCGAGACGCTGACTGATTGCATCGTGCTGTTGAACCTAATCACTGTGTATACACAGCGGACAGAAGGAACCGCCGGCCCCGGAGTCACGATGCCGTGTTATAGCTTAAGAAATATCATCAAGTACCCGCGAGCAGTGCTGCGGACGATTCTGGTGGTCGCCAACAACATCTACTGCGTGCCCACCTATCTCCGTATGGATGTTTTTGCTGCTTCCGCTAAGAAAGATCCACGAAACGTACTACTACCGCATCGAGGGCATACTCTTCCACTGGCTGCTGGCCAACGTGTCGATGTGGTCCTGGA]

[+] EMBL BX621012             [ACAGCAATTGTAGCAGTGGCAAGCGGCGCAGAAAACTGGAAGCCACAGACGTGCAGCCAAAAATCCCGACCGGCCATCCGCCCGTACCTGGCTGCTACTGATGCAAAGCCCAACCACAACACCATCATCATTATCATCATTATCATTGCGCGGTGCGCATCAGCTCAGCCGAGCACGGAACGCTGGCGCGCGCGTGTGGATAACGCAGCATGGAGCTACAGTAAATTAGTTGGTTCAGCGTGAAGAAGATTAATCGCGTGAAAAGAAACGACCCACTACAGAGTACAGTGCGCGGCGGGACATCGGGAGCGGCATCGGTGTCATAGTAGATCGCGTAGAATTAAAGCGCCATTGATAAGACACGGCGCACGCTAGAAAAATCCAGACCTTGTTGTGGACGTACATTCCGCACCGGCAGCGGGAGCAGCGAGACGCTGACTGATTGCATCGTGCTGTTGAACCTAATCACTGTGTATACACAGCGGACAGAAGGAACCGCCGGCCCCGGAGTCACGATGCCGTGTTATAGCTTAAGAAATATCATCAAGTACCCGCGAGCAGTGCTGCGGACGATTCTGGTGGTCGCCAACAACATCTACTGCGTGCCCACCTATCTCCGTATGGATGTTTTTGCTGCTTCCGCTAAGAAAGATCCACGAAACGTACTACTACCGCATCGAGGGCATACTCTTCCACTGGCTGCTGGCCAACGTGTCGATGTGGTCCTGGA]




>consensus_3026#0
ACAGCAATTGTAGCAGTGGCAAGCGGCGCAGAAAACTGGAAGCCACAGACGTGCAGCCAA
AAATCCCGACCGGCCATCCGCCCGTACCTGGCTGCTACTGATGCAAAGCCCAACCACAAC
ACCATCATCATTATCATCATTATCATTGCGCGGTGCGCATCAGCTCAGCCGAGCACGGAA
CGCTGGCGCGCGCGTGTGGATAACGCAGCATGGAGCTACAGTAAATTAGTTGGTTCAGCG
TGAAGAAGATTAATCGCGTGAAAAGAAACGACCCACTACAGAGTACAGTGCGCGGCGGGA
CATCGGGAGCGGCATCGGTGTCATAGTAGATCGCGTAGAATTAAAGCGCCATTGATAAGA
CACGGCGCACGCTAGAAAAATCCAGACCTTGTTGTGGACGTACATTCCGCACCGGCAGCG
GGAGCAGCGAGACGCTGACTGATTGCATCGTGCTGTTGAACCTAATCACTGTGTATACAC
AGCGGACAGAAGGAACCGCCGGCCCCGGAGTCACGATGCCGTGTTATAGCTTAAGAAATA
TCATCAAGTACCCGCGAGCAGTGCTGCGGACGATTCTGGTGGTCGCCAACAACATCTACT
GCGTGCCCACCTATCTCCGTATGGATGTTTTTGCTGCTTCCGCTAAGAAAGATCCACGAA
ACGTACTACTACCGCATCGAGGGCATACTCTTCCACTGGCTGCTGGCCAACGTGTCGATG
TGGTCCTGGA

consensusID : consensus_3026#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [GCAAGAATCCCGCACGANTGGAAAGATCCACGAAACGTACTACTACCGCATCGAGGGCATACTCTTCCACTGGCTGCTGGCCAACGTGTCGATGTGGTCCTGGACGGCCGGTTACGAAGTGGTGGAGATGGGCGACGATATAACGACCGCCTTCGATAAGCGCACGCTGGTGCTGGCGAACCATCAGAGCACCTCCGATGTGCCCCTGCTGATGGCGGCCTTCAACGCCAAGAAGGGCATCCTGCCGAACATCATGTGGATCATGGATCGGCTCTTTAAGTATACCAACTTCGGTGCGGTCAGCCTTGTGCATCAGGACTTTTTCATAGCCTCGGGCAAGAAAAATCGCGAAAAATCGCTACAGCAACTGAAATCGCACATACGGCAGTGCTACGTGCCGCGGAAGCGGAAGTGGATGGTACTATTTCCCGAGGGTGGTTTCCTGCGCAAACGAAAGGAA]

[+] EMBL BX466245             [GCAAGAATCCCGCACGANTGGAAAGATCCACGAAACGTACTACTACCGCATCGAGGGCATACTCTTCCACTGGCTGCTGGCCAACGTGTCGATGTGGTCCTGGACGGCCGGTTACGAAGTGGTGGAGATGGGCGACGATATAACGACCGCCTTCGATAAGCGCACGCTGGTGCTGGCGAACCATCAGAGCACCTCCGATGTGCCCCTGCTGATGGCGGCCTTCAACGCCAAGAAGGGCATCCTGCCGAACATCATGTGGATCATGGATCGGCTCTTTAAGTATACCAACTTCGGTGCGGTCAGCCTTGTGCATCAGGACTTTTTCATAGCCTCGGGCAAGAAAAATCGCGAAAAATCGCTACAGCAACTGAAATCGCACATACGGCAGTGCTACGTGCCGCGGAAGCGGAAGTGGATGGTACTATTTCCCGAGGGTGGTTTCCTGCGCAAACGAAAGGAA]




>consensus_3026#1
GCAAGAATCCCGCACGANTGGAAAGATCCACGAAACGTACTACTACCGCATCGAGGGCAT
ACTCTTCCACTGGCTGCTGGCCAACGTGTCGATGTGGTCCTGGACGGCCGGTTACGAAGT
GGTGGAGATGGGCGACGATATAACGACCGCCTTCGATAAGCGCACGCTGGTGCTGGCGAA
CCATCAGAGCACCTCCGATGTGCCCCTGCTGATGGCGGCCTTCAACGCCAAGAAGGGCAT
CCTGCCGAACATCATGTGGATCATGGATCGGCTCTTTAAGTATACCAACTTCGGTGCGGT
CAGCCTTGTGCATCAGGACTTTTTCATAGCCTCGGGCAAGAAAAATCGCGAAAAATCGCT
ACAGCAACTGAAATCGCACATACGGCAGTGCTACGTGCCGCGGAAGCGGAAGTGGATGGT
ACTATTTCCCGAGGGTGGTTTCCTGCGCAAACGAAAGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3026#0      ACAGCAATTGTAGCAGTGGCAAGCGGCGCAGAAAACTGGAAGCCACAGACGTGCAGCCAA 60
consensus_3026#1      GCAAGAATCCCGCACGANTGGAAAGATCCACGAAACGTACTACTACCGCATCGAGGGCAT 60
                       **  ***       *     *  *   **  ****      * ** *    *  * ** 

consensus_3026#0      AAATCCCGACCGGCCATCCGCCCGTACCTGGCTGCTACTGATGCAAAGCCCAACCACAAC 120
consensus_3026#1      ACTCTTCCACTGGCTGCTGGCCAACGTGTCGATG-TGGTCCTG-GACGGCCGGTTACGAA 118
                      *     * ** ***     ***      * * ** *  *  **  * * **    ** * 

consensus_3026#0      ACCATCATCATTATCATCATTATCATTGCGCGGTGCGCATCAGCTCAGCCGAGCACGGAA 180
consensus_3026#1      GTGGTGGAGATGGGCGACGATATAACGAC------CGCCTTCGATAAGC-GCACGCTGG- 170
                          *    **   *  *  *** *   *      *** *  * * *** *  * * *  

consensus_3026#0      CGCTGGCGCGCGCGTGTGGATAACGCAGCATGGAGCTACAGTAAATTAGTTGGTTCAGCG 240
consensus_3026#1      TGCTGGCGAAC-CATCAGAGCACCTC--CGATGTGCCCCTGCTGATGGCGGCCTTCAACG 227
                       *******  * * *  *   * * *  *   * **  * *   **       **** **

consensus_3026#0      TGAAGAAGATTAATCGCGTGAAAAGAAACGACCCACTACAGAGTACAGTGCGCGGCGGGA 300
consensus_3026#1      CCAAGAAGGGCA-TCCTGCCGAACATCATG-TGGATCATGGA--TCGGCTCTTTA-AGTA 282
                        ******   * **  *   **    * *    *  *  **   * *  *      * *

consensus_3026#0      CATCGGGAGCGGCATCGGTGTCATAGTAGATCGCGTAGAATTAAAGCGCCATTGATAAGA 360
consensus_3026#1      TACCAACTTCGGTGCGGTCAGCCTTGTGCATCA-GGACTTTTTCATAGCCTCGGGCAAGA 341
                       * *     ***    *    * * **  ***  * *   **  *  ***   *  ****

consensus_3026#0      CACGGCGCACGCTAGAAAAATCCAGACCTTG-TTGTGGACGTACATTCCGCACCGGCAGC 419
consensus_3026#1      AAAATCGC------GAAAAATCGCTACAGCAACTGAAATCGCACATACGGCAGTGCTACG 395
                       *   ***      ********   **      **    ** **** * ***  *  *  

consensus_3026#0      GGGAGCAGCGAGACGCTGACTGATTGCATCGTGCTGTTGAACCTAATCACTGTGTATACA 479
consensus_3026#1      TGCCGCGG--AAGCGGAAGTGGATGGTACTATTTCCCGAGGGTGGTTTCCTGCGCAAACG 453
                       *  ** *  *  **      *** * *   *              *  *** * * ** 

consensus_3026#0      CAGCGGACAGAAGGAACCGCCGGCCCCGGAGTCACGATGCCGTGTTATAGCTTAAGAAAT 539
consensus_3026#1      AAAGGAA----------------------------------------------------- 460
                       *  * *                                                     

consensus_3026#0      ATCATCAAGTACCCGCGAGCAGTGCTGCGGACGATTCTGGTGGTCGCCAACAACATCTAC 599
consensus_3026#1      ------------------------------------------------------------
                                                                                  

consensus_3026#0      TGCGTGCCCACCTATCTCCGTATGGATGTTTTTGCTGCTTCCGCTAAGAAAGATCCACGA 659
consensus_3026#1      ------------------------------------------------------------
                                                                                  

consensus_3026#0      AACGTACTACTACCGCATCGAGGGCATACTCTTCCACTGGCTGCTGGCCAACGTGTCGAT 719
consensus_3026#1      ------------------------------------------------------------
                                                                                  

consensus_3026#0      GTGGTCCTGGA 730
consensus_3026#1      -----------