These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [CCGCGGACGCGTGGGTTTTTTTTCCGGCATCGTGTATGCTAGCTGGACACATTTTGTTTAAGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAAGAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGCGAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCGTGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAGCTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCAGCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTTCTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGGAAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAACAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCGCATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGTGTGTACATTTATAATGGAATCCCCAAC] [+] EMBL BM575499 [CCGCGGACGCGTGGGTTTTTTTTCCGGCATCGTGTATGCTAGCTGGACACATTTTGTTTAAGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAAGAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGCGAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCGTGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAGCTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCAGCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTTCTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGGAAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAACAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCGCATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGTGTGTACATTTATAATGGAATCCCCAAC] consensusID : consensus_303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CCGCGGACGCGTGGGATCGTGTATGCTAGCTGGACACATTTTGTTTAAGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAAGAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGCGAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCGTGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAGCTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCAGCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTTCTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGGAAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAACAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCGCATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGT] [+] EMBL BM608525 [CCGCGGACGCGTGGGATCGTGTATGCTAGCTGGACACATTTTGTTTAAGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAAGAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGCGAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCGTGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAGCTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCAGCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTTCTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGGAAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAACAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCGCATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_303#0 CCGCGGACGCGTGGGTTTTTTTTCCGGCATCGTGTATGCTAGCTGGACACATTTTGTTTA 60 consensus_303#1 CCGCGGACGCGTGGG-------------ATCGTGTATGCTAGCTGGACACATTTTGTTTA 47 *************** ******************************** consensus_303#0 AGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAA 120 consensus_303#1 AGCCTAACTGATCATGGCTGATACCGCCACCGCTGCCGCTGCTACTAAGAAGCCGGCCAA 107 ************************************************************ consensus_303#0 GAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGC 180 consensus_303#1 GAAGGCCGCGCCAAAGAAGGCCGCCGCTAAGGCCGAGGCTGGTGCCAAGGCTGACGCCGC 167 ************************************************************ consensus_303#0 GAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCG 240 consensus_303#1 GAAGGCTGCCCCGAAGGGAGACCGCAAATCGCGTCAAACTCCGGAAGCGATCCGTGCCCG 227 ************************************************************ consensus_303#0 TGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAG 300 consensus_303#1 TGTCAAGCGTGCGAAGGAGCTGCGCACCCCGAAACCGAACCTGCCGCGCCCGAAGAAGAG 287 ************************************************************ consensus_303#0 CTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCA 360 consensus_303#1 CTTCGGTCGTCTGTGGGCCAAGGCTGTGTTCACCGGCTACAAGCGTGGGCTCCGCAACCA 347 ************************************************************ consensus_303#0 GCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTT 420 consensus_303#1 GCACGAGAAGCACGCTCTGCTGAAGATTGAAGGTTGCCGCAACCGCAAGAACGTCCTGTT 407 ************************************************************ consensus_303#0 CTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGG 480 consensus_303#1 CTACATCGGCAAGCGGTGCGTGTACGTGTACCGCGGTAAGTCCAAGCAGAACCACCCGGG 467 ************************************************************ consensus_303#0 AAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAA 540 consensus_303#1 AAGCAACAAGAAGTCCACCATCCGCGCCATCTGGGGCAAGATTACCCGTTCGCACGGTAA 527 ************************************************************ consensus_303#0 CAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCG 600 consensus_303#1 CAGTGGCAGCGTTCGCGCACGATTCCGCACCAACCTGCCCGGACACGCCATGGGCCATCG 587 ************************************************************ consensus_303#0 CATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGTGTGTACATTTAT 660 consensus_303#1 CATCAGAATCATGCTTTACCCGTCGCGTATTTAAGCGCAGTAAATCGT------------ 635 ************************************************ consensus_303#0 AATGGAATCCCCAAC 675 consensus_303#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||