These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [AGATCCCCCGAGGTTTACACGAGGCGTGTATGGNCTCTGCACAGGACCGAACGGTCCGCAGACGACGGTCCGCAGTGGCAATCGTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGCCAATGCGAAAGAGACGCCAGAGAAAGAGACACCAACGGCAGCAATAGCAACGAACTCTAGACTGACGGACATGCAGTCGGTGAAGTTTGAAATTGTGGCACTGTGGGCTGAGATTTGACTCATGGAAGCGAGTTTTCCTTCCAGCGTAGCCCAGCGACCACGCCACACATAAAAGGACAACCTTTAGAACGACATAATATTCGCACCGAAAATGGATGCGAAAGGTGGAAGTGATTGCAATTTTTTANGTGTGCGCGACGAGCGTACTCTCCCTGCCATATTCCAGTGAGATGCGCGATCACCCTCAATGTGACCATTGCAGCAGGAGAAAAACTCGATCANTCGANACCACCTTCTTTGACAACGATGGTCAAACAGTTTTTGAGAGGTTTATCACCAAAATCTGCTCGATGCAGTACTCTGCATGTTTATTGAAAGTATGGGGACACACGATCCCACCGATAACAGACAACCGCGGNTCTTTCGAACGTGGACAGGAGCTCTGGAACGAGTGAACTGGAGGTCGACACTCCTNTCGGCTGTGACGTATGACTAAGGTAAACTACTNTACCGCATACGAACTTGCNGTGACGANATGTGTTACACTATTTGCTGTCCGGCNGTANGCCNGTGATGCTTCACNCAAGTGNNNTCAANTAGGGGAAACGAATGTNG] [+] EMBL AL931742 [AGATCCCCCGAGGTTTACACGAGGCGTGTATGGNCTCTGCACAGGACCGAACGGTCCGCAGACGACGGTCCGCAGTGGCAATCGTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGCCAATGCGAAAGAGACGCCAGAGAAAGAGACACCAACGGCAGCAATAGCAACGAACTCTAGACTGACGGACATGCAGTCGGTGAAGTTTGAAATTGTGGCACTGTGGGCTGAGATTTGACTCATGGAAGCGAGTTTTCCTTCCAGCGTAGCCCAGCGACCACGCCACACATAAAAGGACAACCTTTAGAACGACATAATATTCGCACCGAAAATGGATGCGAAAGGTGGAAGTGATTGCAATTTTTTANGTGTGCGCGACGAGCGTACTCTCCCTGCCATATTCCAGTGAGATGCGCGATCACCCTCAATGTGACCATTGCAGCAGGAGAAAAACTCGATCANTCGANACCACCTTCTTTGACAACGATGGTCAAACAGTTTTTGAGAGGTTTATCACCAAAATCTGCTCGATGCAGTACTCTGCATGTTTATTGAAAGTATGGGGACACACGATCCCACCGATAACAGACAACCGCGGNTCTTTCGAACGTGGACAGGAGCTCTGGAACGAGTGAACTGGAGGTCGACACTCCTNTCGGCTGTGACGTATGACTAAGGTAAACTACTNTACCGCATACGAACTTGCNGTGACGANATGTGTTACACTATTTGCTGTCCGGCNGTANGCCNGTGATGCTTCACNCAAGTGNNNTCAANTAGGGGAAACGAATGTNG] consensusID : consensus_3034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [ATTGGAAATAATTGACATTTGTGTAATGGCTTTTTGAGTGCGCATGGTGTGCGCGGCCATGTAGTTATCTAGGTACAGTGAGATCGGATAAGCAATCGAAGTGCAAGGGAAGCGATATAAACTACCATTACCCCCAAATGGGAACGCAGCAGAAGAGGAGGTAGCGCGAAGAAAATCGAAACGAACAGAGAACTCGAAATTTAAAGCGAAACGACGATCGCCACTCAACGGGCCACATTGTACAAAGAACGGAACTGCAGCGGCAACCCAGTCGAGTGGGTGGATGCATCGCGTATCGTGTATGGCCTCTGCCACAGGACCCGAACGGTCCGCAGACGACGGTCCGCAGTGGCAATCGTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGCCAATGCGAAAGAGACGCCAGAGAAAGAGACACCAACGGCAGCAATAGCAACGAACTCTAGACGACGGACATGCAGTCGGTGAAGTTTGAAATTGTGGCACTGTGGGCGAGATTTGACTCATGGAAGCGAGTTTTCCTTCCAGCGTAGCCCAGCGACCACGCCACACATAAAAGGACAACCTTTAG] [+] EMBL BX620130 [ATTGGAAATAATTGACATTTGTGTAATGGCTTTTTGAGTGCGCATGGTGTGCGCGGCCATGTAGTTATCTAGGTACAGTGAGATCGGATAAGCAATCGAAGTGCAAGGGAAGCGATATAAACTACCATTACCCCCAAATGGGAACGCAGCAGAAGAGGAGGTAGCGCGAAGAAAATCGAAACGAACAGAGAACTCGAAATTTAAAGCGAAACGACGATCGCCACTCAACGGGCCACATTGTACAAAGAACGGAACTGCAGCGGCAACCCAGTCGAGTGGGTGGATGCATCGCGTATCGTGTATGGCCTCTGCCACAGGACCCGAACGGTCCGCAGACGACGGTCCGCAGTGGCAATCGTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGCCAATGCGAAAGAGACGCCAGAGAAAGAGACACCAACGGCAGCAATAGCAACGAACTCTAGACGACGGACATGCAGTCGGTGAAGTTTGAAATTGTGGCACTGTGGGCGAGATTTGACTCATGGAAGCGAGTTTTCCTTCCAGCGTAGCCCAGCGACCACGCCACACATAAAAGGACAACCTTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3034#0 AGATCCCCCGAGGTTTACACGAGGCGTGTATGGNCTCTGCACAGGACCGAACGGTCCGCA 60 consensus_3034#1 ------------------------------------------------------------ consensus_3034#0 GACGACGGTCCGCAGTGGCAATCGTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGC 120 consensus_3034#1 ------------------------------------------------------------ consensus_3034#0 CAATGCGAAAGAGACGCCAGAGAAAGAGACACCAACGGCAGCAATAGCAACGAACTCTAG 180 consensus_3034#1 -----------------------ATTGGAAATAATTGACATTTGT-GTAATGGCTTTTTG 36 * ** * * * ** * * ** * * * * consensus_3034#0 ACTGACGGACATGCAGTCGGTGAAGTTTGAAATTGTGGCACTGTGGGCTGAGATTTGACT 240 consensus_3034#1 AGTGCGCATGGTGTGCGCGGCCATGTA-GTTATCTAGGTACAGTGAGATCGGAT------ 89 * ** ** *** * ** * ** ** ** *** * * *** consensus_3034#0 CATGGAAGCGAGTTTTCCTTCCAGCGTAGCCCAGCGACCACGCCACACATAAAAGGACAA 300 consensus_3034#1 -AAGCAATCGAAGTGCAAGGGAAGCG-ATATAAACTACCATTACCCCCAAATGGGAACGC 147 * * ** *** * **** * * * **** * * ** * * ** consensus_3034#0 CCTTTAGAACGACATAATATTCGCACCGAAAATGGATGCGAAAGGTGGAAGTGATTGCAA 360 consensus_3034#1 AGCAGAAGAGGAGGTAG----CGCGAAGAAAATCGAAACGAACAGAGAA------CTCGA 197 * * ** ** *** ****** ** **** * * * * * consensus_3034#0 TTTTTTANGTGTGCGCGACGAGCGT-ACTCTCCCTGCCATATTCCAGTGAGATGCGCGAT 419 consensus_3034#1 AATTTAAAGCG-AAACGACGATCGCCACTCAACGGGCCACATTGTACAAAGA-ACGGAAC 255 *** * * * ****** ** **** * **** *** * *** ** * consensus_3034#0 CACCCTCAATGTGACCATTGCAGCAGGAGAAAAACTCGATCANTCGANACCACCTTCTTT 479 consensus_3034#1 TGCAGCGGCAAC--CCAGTCGAGTGGGTGGATGCATCGCGTATCGTGTATGGCCTCT--- 310 * *** * ** ** * * *** * * *** consensus_3034#0 GACAACGATGGTCAAACAGTTTTTGAGAGGTTTATCACCAAAATCTGCTCGATGCAGTAC 539 consensus_3034#1 -GCCACAGGACCCGAACGGTC--------------CGCAGACGACGGTCCGCAGTGGCAA 355 * ** * *** ** * * * * * ** * * * consensus_3034#0 TCTGCATGTTTATTGAAAGTATGGGGACACACGATCCCACCGATAACAGACAACCGCGGN 599 consensus_3034#1 TC-GTTTTCCCACAAAGCGAATGGCTAATAGCCAGATCGCCAATGCGAAAGAGACGCCAG 414 ** * * * * * **** * * * * ** ** * * * *** consensus_3034#0 TCTTTCGAACGTGGACAGGAGCTCTGGAACGAGTGAACTGGAGGTCGACACTCCTNTCGG 659 consensus_3034#1 AGAAAGAGACACCAACGGCAGCAATAG---CAACGAACTCTAGA-CGACGGACATGCAGT 470 ** ** * *** * * * ***** ** **** * * * consensus_3034#0 CTGTGACGTATGACTAAGGTAAACTACTNTACCGCATACGAACTTGCNGTGACGANATGT 719 consensus_3034#1 CGGTGAAGTTTGA--------AATTGTGGCACTGTGGGCGAGATTTGACTCATGGAA-GC 521 * **** ** *** ** * ** * *** ** * * * * * consensus_3034#0 GTTACACTATTTGCTGTCCGGCNGTANGCCNGTGAT-GCTTCACNCAAGTGNNNTCAANT 778 consensus_3034#1 G------AGTTTTCCTTCCAGCG-TAGCCCAGCGACCACGCCACACATAAAAGGACAACC 574 * *** * *** ** ** ** * ** * *** ** *** consensus_3034#0 AGGGGAAACGAATGTNG 795 consensus_3034#1 TTTAG------------ 579 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||