These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [AAGCGGCGCAAGCCGCAATTATACGGATTCTTATGATCACCATGTTATGAGTTGACGAATGGAAAACTACACTTTAAGGGATTTTTTTTTTTATATTACGATGGAATTAGCTGCCATTACTGCAGGCAATGCACTTTGATTTGAGCTTGTTTGGATTGATCCATCCTGTTTGAACACATCCGGACTCCTTCGGGGTCGTCGGGAGTGATCTGGAATCGTCTGCAGCCCTCCAAAGTTGGTCGCGGCATTCTTCCATTCGTCCTTGGACTTGGTTTTGATTCTGAGTAGGATTCAGTGGATATCGGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTACACGCCGTAGCAATTCTGTGTGGTATCAGTACGTCATTTGTAACATAAGGGTGGACACTTCCCAACCCCATGCACCGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATGCTATTGGAATATTCATTGGGCGTAGTGTCTAGTGCAGTGGTCGGCAAACTTTACGGCATAGAGCCAAAATCAGCAACTCATACCGGTCAGAACTGCATGTGTAAGAATCAAATTGATGAACTCACCACTATAATGTATAAT] [+] EMBL BX615646 [AAGCGGCGCAAGCCGCAATTATACGGATTCTTATGATCACCATGTTATGAGTTGACGAATGGAAAACTACACTTTAAGGGATTTTTTTTTTTATATTACGATGGAATTAGCTGCCATTACTGCAGGCAATGCACTTTGATTTGAGCTTGTTTGGATTGATCCATCCTGTTTGAACACATCCGGACTCCTTCGGGGTCGTCGGGAGTGATCTGGAATCGTCTGCAGCCCTCCAAAGTTGGTCGCGGCATTCTTCCATTCGTCCTTGGACTTGGTTTTGATTCTGAGTAGGATTCAGTGGATATCGGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTACACGCCGTAGCAATTCTGTGTGGTATCAGTACGTCATTTGTAACATAAGGGTGGACACTTCCCAACCCCATGCACCGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATGCTATTGGAATATTCATTGGGCGTAGTGTCTAGTGCAGTGGTCGGCAAACTTTACGGCATAGAGCCAAAATCAGCAACTCATACCGGTCAGAACTGCATGTGTAAGAATCAAATTGATGAACTCACCACTATAATGTATAAT] consensusID : consensus_3050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [TAAGCGGCGCAAGCCGCAATTATACGGATGCTTATGATCACCATGTTATGGGTTGACGAATGGAAAACTACACATTTTTATATTACGATGGAATTAGCTGCCATTACTGCAAGCAATGATATGCACTTTGATTTGACCTTGTTTGGATTGATCCATCCTGTTTGAACACATCCAGGCTCATCCAGAGCCGTTCGTAATCAACCGGAATCGCCCGAAGCTAACCGGAATGGTTCGGAGTCATCCGGACTCATTCGGGGTCGTCGGAAGTGATCTGGAATCGTCTGGAGCCCTCCAAAGTTGGTCGCCGCATCCTTCCGGATTCGTCCTTGGACTTGGTTTTGATTCCCATTAGAATTCAGTGGATATCTGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTACACACCGTAACCATTCTGTGTGGTATCTGTACGTCATTTCTAACAGAAGGGTGGACACTTCCCAACCCAATGGAGTGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATCCTATTGGAATATTCATTGGGCGTAGCGTCTAGTGCAGTGGTCGGTAAACTTTACGGCATAAAGAGCCAAA] [+] EMBL BX611130 [TAAGCGGCGCAAGCCGCAATTATACGGATGCTTATGATCACCATGTTATGGGTTGACGAATGGAAAACTACACATTTTTATATTACGATGGAATTAGCTGCCATTACTGCAAGCAATGATATGCACTTTGATTTGACCTTGTTTGGATTGATCCATCCTGTTTGAACACATCCAGGCTCATCCAGAGCCGTTCGTAATCAACCGGAATCGCCCGAAGCTAACCGGAATGGTTCGGAGTCATCCGGACTCATTCGGGGTCGTCGGAAGTGATCTGGAATCGTCTGGAGCCCTCCAAAGTTGGTCGCCGCATCCTTCCGGATTCGTCCTTGGACTTGGTTTTGATTCCCATTAGAATTCAGTGGATATCTGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTACACACCGTAACCATTCTGTGTGGTATCTGTACGTCATTTCTAACAGAAGGGTGGACACTTCCCAACCCAATGGAGTGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATCCTATTGGAATATTCATTGGGCGTAGCGTCTAGTGCAGTGGTCGGTAAACTTTACGGCATAAAGAGCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3050#0 -AAGCGGCGCAAGCCGCAATTATACGGATTCTTATGATCACCATGTTATGAGTTGACGAA 59 consensus_3050#1 TAAGCGGCGCAAGCCGCAATTATACGGATGCTTATGATCACCATGTTATGGGTTGACGAA 60 **************************** ******************** ********* consensus_3050#0 TGGAAAACTACACTTTAAGGGATTTTTTTTTTTATATTACGATGGAATTAGCTGCCATTA 119 consensus_3050#1 TGGAAAACTACACATT--------------TTTATATTACGATGGAATTAGCTGCCATTA 106 ************* ** ****************************** consensus_3050#0 CTGCAGGCAATG-----CACTTTGATTTGAGCTTGTTTGGATTGATCCATCCTGTTTGAA 174 consensus_3050#1 CTGCAAGCAATGATATGCACTTTGATTTGACCTTGTTTGGATTGATCCATCCTGTTTGAA 166 ***** ****** ************* ***************************** consensus_3050#0 CACATCC----------------------------------------------------- 181 consensus_3050#1 CACATCCAGGCTCATCCAGAGCCGTTCGTAATCAACCGGAATCGCCCGAAGCTAACCGGA 226 ******* consensus_3050#0 -----------------GGACTCCTTCGGGGTCGTCGGGAGTGATCTGGAATCGTCTGCA 224 consensus_3050#1 ATGGTTCGGAGTCATCCGGACTCATTCGGGGTCGTCGGAAGTGATCTGGAATCGTCTGGA 286 ****** ************** ******************* * consensus_3050#0 GCCCTCCAAAGTTGGTCGCGGCATTCTTCC--ATTCGTCCTTGGACTTGGTTTTGATTCT 282 consensus_3050#1 GCCCTCCAAAGTTGGTCGCCGCATCCTTCCGGATTCGTCCTTGGACTTGGTTTTGATTCC 346 ******************* **** ***** *************************** consensus_3050#0 GAGTAGGATTCAGTGGATATCGGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTA 342 consensus_3050#1 CATTAGAATTCAGTGGATATCTGAGTGGATCTGCTCCGCATAACACATCACTAATCTCTA 406 * *** ************** ************************************** consensus_3050#0 CACGCCGTAGCAATTCTGTGTGGTATCAGTACGTCATTTGTAACATAAGGGTGGACACTT 402 consensus_3050#1 CACACCGTAACCATTCTGTGTGGTATCTGTACGTCATTTCTAACAGAAGGGTGGACACTT 466 *** ***** * *************** *********** ***** ************** consensus_3050#0 CCCAACCCCATGCACCGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATGCT 462 consensus_3050#1 CCCAACCCAATGGAGTGGGTATTTGTTTGCGGATGTATTTGCGCCCAATCGTAGAATCCT 526 ******** *** * ***************************************** ** consensus_3050#0 ATTGGAATATTCATTGGGCGTAGTGTCTAGTGCAGTGGTCGGCAAACTTTACGGCATA-- 520 consensus_3050#1 ATTGGAATATTCATTGGGCGTAGCGTCTAGTGCAGTGGTCGGTAAACTTTACGGCATAAA 586 *********************** ****************** *************** consensus_3050#0 GAGCCAAAATCAGCAACTCATACCGGTCAGAACTGCATGTGTAAGAATCAAATTGATGAA 580 consensus_3050#1 GAGCCAAA---------------------------------------------------- 594 ******** consensus_3050#0 CTCACCACTATAATGTATAAT 601 consensus_3050#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||