Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3053 cluster # 3053       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3053#0 length = 735 sequences # 1  
consensus_3053#1 length = 672 sequences # 1  

consensusID : consensus_3053#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 735
fasta sequence
                              [AGGTTATCCGTGGAATTTGTTTTCCACCAGTACGAGGGCACCCTGTTACCGCGAACGGTTAGCAGTTTGTCAGCTACTTCAGGCAGCAAACCAACGCGCGATCCTGCAATCCACCTAGGCGGCAAACGCGTGTAGCCAAAGTAACGCCGACCGGGCGGCAAAATTGCATTATCATAAAGCCAATCTCAAAATTTGCCATTTTCAACCTTTCACCAAGATTGCACGGATTTGGTCATCTTTCGCGAAGCACACTTCCCTCATAAGCATGGGGTATCCGTTTCGCAACCCAACCGTACTCTTCGAGGTTCTTTNTTTCCTTCATTTTACCGTCATCGACGTTGTCGGTGGGGCCATACATTGTCTGCTCATGCATTTCAAATTCTAGCGATTACTGTAGAAGGGACCCTTTNNNGTGCAATAATGAAAGTGGTCGCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAATGGAGATATTATGTCTTACCCGTCTTTCCTGCCTATGTGTCAGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTTCAGTTTGAAATCTAAAACTGCATAATAAAATCTNTACCAATACTACAAAAATAACATAAACACGCATGATTCGGTTCATCAATTACTGGAATCAATANTGAACTTATGTACNGCGTCCTNTACTAGTCTAACAAATCCTCTAAATCTTTATTCCTT]

[+] EMBL AL934864             [AGGTTATCCGTGGAATTTGTTTTCCACCAGTACGAGGGCACCCTGTTACCGCGAACGGTTAGCAGTTTGTCAGCTACTTCAGGCAGCAAACCAACGCGCGATCCTGCAATCCACCTAGGCGGCAAACGCGTGTAGCCAAAGTAACGCCGACCGGGCGGCAAAATTGCATTATCATAAAGCCAATCTCAAAATTTGCCATTTTCAACCTTTCACCAAGATTGCACGGATTTGGTCATCTTTCGCGAAGCACACTTCCCTCATAAGCATGGGGTATCCGTTTCGCAACCCAACCGTACTCTTCGAGGTTCTTTNTTTCCTTCATTTTACCGTCATCGACGTTGTCGGTGGGGCCATACATTGTCTGCTCATGCATTTCAAATTCTAGCGATTACTGTAGAAGGGACCCTTTNNNGTGCAATAATGAAAGTGGTCGCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAATGGAGATATTATGTCTTACCCGTCTTTCCTGCCTATGTGTCAGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTTCAGTTTGAAATCTAAAACTGCATAATAAAATCTNTACCAATACTACAAAAATAACATAAACACGCATGATTCGGTTCATCAATTACTGGAATCAATANTGAACTTATGTACNGCGTCCTNTACTAGTCTAACAAATCCTCTAAATCTTTATTCCTT]


>consensus_3053#0 AGGTTATCCGTGGAATTTGTTTTCCACCAGTACGAGGGCACCCTGTTACCGCGAACGGTT AGCAGTTTGTCAGCTACTTCAGGCAGCAAACCAACGCGCGATCCTGCAATCCACCTAGGC GGCAAACGCGTGTAGCCAAAGTAACGCCGACCGGGCGGCAAAATTGCATTATCATAAAGC CAATCTCAAAATTTGCCATTTTCAACCTTTCACCAAGATTGCACGGATTTGGTCATCTTT CGCGAAGCACACTTCCCTCATAAGCATGGGGTATCCGTTTCGCAACCCAACCGTACTCTT CGAGGTTCTTTNTTTCCTTCATTTTACCGTCATCGACGTTGTCGGTGGGGCCATACATTG TCTGCTCATGCATTTCAAATTCTAGCGATTACTGTAGAAGGGACCCTTTNNNGTGCAATA ATGAAAGTGGTCGCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAATGG AGATATTATGTCTTACCCGTCTTTCCTGCCTATGTGTCAGGGTATTAAACTTCGTGCTTT ACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTTCAGTTTGAAATCTAAAACTGC ATAATAAAATCTNTACCAATACTACAAAAATAACATAAACACGCATGATTCGGTTCATCA ATTACTGGAATCAATANTGAACTTATGTACNGCGTCCTNTACTAGTCTAACAAATCCTCT AAATCTTTATTCCTT



consensusID : consensus_3053#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence
                              [CCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAAATGGAGATATTATGTCTTCCCGTCTTTCCTGCCTATGTGTCGGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTCAGTTTGAAAAATAAAATGATAATAAAATCTTCCAATACTACAAAAATAAATAAACACTCATGATTCGGTTCATCAATTACTGGAATCAATTTTGAATTATGTTTGCGTCCTTTCTTGTTTAAAAATCCTCTAAATCTTTATTCCTTATTGGAAATACTATTGTAATGTTAAACAGTAAGTAGCAAATATAAGCGCCACTGTTTGTAATCTAACAGATTTCCGTACAGACACATTCCACAAAGGGCAAAAATATAACACAAAAATTGTAAAAATATTATAATATGTAAGCTAGTGCTTAAAAATATGTATGATTCATTCTTCTGTAGGTTAAATAATAGCCTCTCTATTTTCTCGCTTACCTTCGCTCACTTTTGTATCTGTTTCGGTGAGATGATATGTATTTATAATAACAATGAGCGTGTAAAGGTCTAGTTTTACTAGCTTGTAAGTACAATACAGGAAGGCCAGCATACATCCTTATTGTAGCGGCTTTGGCCTCTAAGCCGAGAAAGCAGTTTCATACAG]

[+] EMBL BM654918             [CCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAAATGGAGATATTATGTCTTCCCGTCTTTCCTGCCTATGTGTCGGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTCAGTTTGAAAAATAAAATGATAATAAAATCTTCCAATACTACAAAAATAAATAAACACTCATGATTCGGTTCATCAATTACTGGAATCAATTTTGAATTATGTTTGCGTCCTTTCTTGTTTAAAAATCCTCTAAATCTTTATTCCTTATTGGAAATACTATTGTAATGTTAAACAGTAAGTAGCAAATATAAGCGCCACTGTTTGTAATCTAACAGATTTCCGTACAGACACATTCCACAAAGGGCAAAAATATAACACAAAAATTGTAAAAATATTATAATATGTAAGCTAGTGCTTAAAAATATGTATGATTCATTCTTCTGTAGGTTAAATAATAGCCTCTCTATTTTCTCGCTTACCTTCGCTCACTTTTGTATCTGTTTCGGTGAGATGATATGTATTTATAATAACAATGAGCGTGTAAAGGTCTAGTTTTACTAGCTTGTAAGTACAATACAGGAAGGCCAGCATACATCCTTATTGTAGCGGCTTTGGCCTCTAAGCCGAGAAAGCAGTTTCATACAG]


>consensus_3053#1 CCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAAATGGAGATATTATGT CTTCCCGTCTTTCCTGCCTATGTGTCGGGGTATTAAACTTCGTGCTTTACTAAAGGCACT AGGAACAAACACAGTCCAGAAGCATTCAGTTTGAAAAATAAAATGATAATAAAATCTTCC AATACTACAAAAATAAATAAACACTCATGATTCGGTTCATCAATTACTGGAATCAATTTT GAATTATGTTTGCGTCCTTTCTTGTTTAAAAATCCTCTAAATCTTTATTCCTTATTGGAA ATACTATTGTAATGTTAAACAGTAAGTAGCAAATATAAGCGCCACTGTTTGTAATCTAAC AGATTTCCGTACAGACACATTCCACAAAGGGCAAAAATATAACACAAAAATTGTAAAAAT ATTATAATATGTAAGCTAGTGCTTAAAAATATGTATGATTCATTCTTCTGTAGGTTAAAT AATAGCCTCTCTATTTTCTCGCTTACCTTCGCTCACTTTTGTATCTGTTTCGGTGAGATG ATATGTATTTATAATAACAATGAGCGTGTAAAGGTCTAGTTTTACTAGCTTGTAAGTACA ATACAGGAAGGCCAGCATACATCCTTATTGTAGCGGCTTTGGCCTCTAAGCCGAGAAAGC AGTTTCATACAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3053#0      AGGTTATCCGTGGAATTTGTTTTCCACCAGTACGAGGGCACCCTGTTACCGCGAACGGTT 60
consensus_3053#1      ---------CCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAAATGGA- 50
                                 ****  * **     *  **      *** *     *     ** **  

consensus_3053#0      AGCAGTTTGTCAGCTACTTCAGGCAGCAAACCAACGCGCGATCCTGCAATCCAC-CTAGG 119
consensus_3053#1      GATATTATGTCTTCCCGTCTTTCCTGCCTATGTGT-CGGGGTATTAAACTTCGTGCTTTA 109
                         * * ****  *   *     * **  *      ** * *  *  * * *   **   

consensus_3053#0      CGGCAAACGCGTGTAGCCAAAGTAACGCCGACCGGGCGGCAAAATTGCATTATCATAAAG 179
consensus_3053#1      CTAAAGGCACTAGGAACAAACACAGTCCAGA---AGCATTCAGTTTGAAAAAT----AAA 162
                      *   *  * *  * * * **   *   * **    **    *  *** *  **    ** 

consensus_3053#0      CCAATCTCAAAATTTGCCATT--TTCAACCTTTCACCAAGATTGCACGGATTTGGTCATC 237
consensus_3053#1      ATGATAATAAAATCTTCCAATACTACAAAAATAAATAAACACT-CATGATTCGGTTCATC 221
                         **   ***** * *** *  * ***   *  *  ** * * ** *  *  * *****

consensus_3053#0      TTTCGCGAAGCACACTTCCCTCATAAGCATGGGGTATCCGTTTCGCAACCCAACCGTACT 297
consensus_3053#1      AATTACTGGAATCAATTTTGAATTATGTTTGCGTCCTTTCTTGTTTAA-------AAATC 274
                        *  *      ** **      ** *  ** *   *   **    **         *  

consensus_3053#0      CTTCGAGGTTCTTTNTTTCCTTCATTTTACCGTCATCGACGTTGTCGGTGGGGCCATACA 357
consensus_3053#1      CTCTAAATCTTTATTCCTTATTGGAAATACTATTGTAATGTTAAACAGTAAG--TAGCAA 332
                      **   *   * * *   *  **     ***  *  *     *   * **  *   *   *

consensus_3053#0      TTGTCTGCTCATGCATTTCAAATTCTAGCGATTACTGTAGAAGGG-ACCCTTTNNNGTGC 416
consensus_3053#1      ATATAAGCGCCACTGTTTGTAATCTAACAGATTTCCGTACAGACACATTCCACAAAGGGC 392
                       * *  ** *     ***  ***   *  **** * *** *     *  *      * **

consensus_3053#0      AATAATGAAAGTGGTCGCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAA 476
consensus_3053#1      AAAAATATAA-----CACAAAAATTGTAAAAATATTATAA-TATGTAAGCTAGTGCTTAA 446
                      ** ***  **     * *  *** * * *  ** *  * * * ** *         * **

consensus_3053#0      ATGGAGATATTATGTCTTACCCGTCTTTCCTGCCTATGTGTCAGGGTATTAAACTTCGTG 536
consensus_3053#1      AAATATGTATGAT---TCATTCTTCTGTA--GGTTAAATAATAGCCTCTCTATTTTCTCG 501
                      *   *  *** **   * *  * *** *   *  **  *   **  * *  *  ***  *

consensus_3053#0      CTTTACTAAAGGCACTA--GGAACAAACACAGTCCAGAAGCATTTCAGTTTGAAATCTAA 594
consensus_3053#1      CTTACCTTCGCTCACTTTTGTATCTGTTTCGGTGAGATGATATGTATTTATAATAACAAT 561
                      ***  **     ****   * * *     * **        ** *   * * * * * * 

consensus_3053#0      AACTGCATAATAAAAT--CTNTACCAATACTACAAAAATAACATAAACACGCATGATTCG 652
consensus_3053#1      GAGCGTGTAAAGGTCTAGTTTTACTAGC-TTGTAAGTACAATACAGGAAGGCCAGCATAC 620
                       *  *  ***     *   * *** *    *  **  * ** * *   * **  *  *  

consensus_3053#0      GTTCATCAATTACTGGAATCAATANTGAACTTATGTACNGCGTCCTNTACTAGTCTAACA 712
consensus_3053#1      ATCCTTATTGTAGCGGCTTTGGCCTCTAAGCCGAGAAAGCAGTTTCATACAG-------- 672
                       * * *    **  **  *        **     * *    **    ***          

consensus_3053#0      AATCCTCTAAATCTTTATTCCTT 735
consensus_3053#1      -----------------------
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)