cluster # 3055

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3055 cluster # 3055 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3055#0 length = 647 sequences # 1

consensus_3055#1 length = 398 sequences # 1

consensusID : consensus_3055#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [GATACATTTGAGCAAAGTTATAATTTAGCGAGATGTTTTCATTCAAAGGACGTCATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCAGTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACAGAAGCAACCACCACCACCAGCACCATCATCTGTAATTCGGCAATCCATCGACACCAAAGCGAAACTGGTAGGCATTAATCGTGCCCTGCACGAACGGCTACAGCAGACCCGCGCCAATCTGCGCCCCTTACAAGCACGAGCCGCACAGTTACAGCACCGCTTCGACGAGTACCAGCGTACCGCCGGCGCACGGCGACCGCCGTCATCCGGGCTTGCTGCCAGGGGGGCTCGCACCGAGCGCAATCAACTGCTCCAGGAAGCCCATCGACTTCGGGCCGCTGTCGAACGAAAGTTACAGGGCTTCGGTACGCTGGACCAGCGCTACCGAAGCATGCGAACGTTACTCGAGCCGAAAACGAAGAGCGCTGGACTGCCCCGGGCATGGCTCGATCGGGATACCGAGCGGCAGATGGAGTTGAACGAGCGCATCTACAAGAACATCATCGACCTGCTAGTGCACCTGATCGAGTGTCCGGTTAACATCATACACGAC]

[+] EMBL BX608354             [GATACATTTGAGCAAAGTTATAATTTAGCGAGATGTTTTCATTCAAAGGACGTCATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCAGTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACAGAAGCAACCACCACCACCAGCACCATCATCTGTAATTCGGCAATCCATCGACACCAAAGCGAAACTGGTAGGCATTAATCGTGCCCTGCACGAACGGCTACAGCAGACCCGCGCCAATCTGCGCCCCTTACAAGCACGAGCCGCACAGTTACAGCACCGCTTCGACGAGTACCAGCGTACCGCCGGCGCACGGCGACCGCCGTCATCCGGGCTTGCTGCCAGGGGGGCTCGCACCGAGCGCAATCAACTGCTCCAGGAAGCCCATCGACTTCGGGCCGCTGTCGAACGAAAGTTACAGGGCTTCGGTACGCTGGACCAGCGCTACCGAAGCATGCGAACGTTACTCGAGCCGAAAACGAAGAGCGCTGGACTGCCCCGGGCATGGCTCGATCGGGATACCGAGCGGCAGATGGAGTTGAACGAGCGCATCTACAAGAACATCATCGACCTGCTAGTGCACCTGATCGAGTGTCCGGTTAACATCATACACGAC]




>consensus_3055#0
GATACATTTGAGCAAAGTTATAATTTAGCGAGATGTTTTCATTCAAAGGACGTCATTTGT
ATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCAGTACATCACAGCAATTACACCAC
AATCGCTGCACCAACTATCACCAATCATCGAACAGAAGCAACCACCACCACCAGCACCAT
CATCTGTAATTCGGCAATCCATCGACACCAAAGCGAAACTGGTAGGCATTAATCGTGCCC
TGCACGAACGGCTACAGCAGACCCGCGCCAATCTGCGCCCCTTACAAGCACGAGCCGCAC
AGTTACAGCACCGCTTCGACGAGTACCAGCGTACCGCCGGCGCACGGCGACCGCCGTCAT
CCGGGCTTGCTGCCAGGGGGGCTCGCACCGAGCGCAATCAACTGCTCCAGGAAGCCCATC
GACTTCGGGCCGCTGTCGAACGAAAGTTACAGGGCTTCGGTACGCTGGACCAGCGCTACC
GAAGCATGCGAACGTTACTCGAGCCGAAAACGAAGAGCGCTGGACTGCCCCGGGCATGGC
TCGATCGGGATACCGAGCGGCAGATGGAGTTGAACGAGCGCATCTACAAGAACATCATCG
ACCTGCTAGTGCACCTGATCGAGTGTCCGGTTAACATCATACACGAC

consensusID : consensus_3055#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [AGATCGGCACGAGGGTTNGACGTATCGAAACTAATTTCCTGTTTTGAGTTGAGATATAAGCTCAACATCAAGGCTGCCATTCGATACAATTGAGCAAAGTTATAATTTAGCAACGATGTTTCCATTCAAAGGACGCAATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCAGTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACANNAAGCAACCACCACCACCAGCACCAGTCATCTGCTAATTCGGCAATCCATCGACAGCCAAAGCGAAACTGGCTAGGCANTTAATCGTGCCCGTGGCACGAACGGCTGCAGCAGACCCGCGGCCAAGTCTGCGCCCCTGTGACAAGGGCACGAGCCGCGAC]

[+] EMBL BX466315             [AGATCGGCACGAGGGTTNGACGTATCGAAACTAATTTCCTGTTTTGAGTTGAGATATAAGCTCAACATCAAGGCTGCCATTCGATACAATTGAGCAAAGTTATAATTTAGCAACGATGTTTCCATTCAAAGGACGCAATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCAGTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACANNAAGCAACCACCACCACCAGCACCAGTCATCTGCTAATTCGGCAATCCATCGACAGCCAAAGCGAAACTGGCTAGGCANTTAATCGTGCCCGTGGCACGAACGGCTGCAGCAGACCCGCGGCCAAGTCTGCGCCCCTGTGACAAGGGCACGAGCCGCGAC]




>consensus_3055#1
AGATCGGCACGAGGGTTNGACGTATCGAAACTAATTTCCTGTTTTGAGTTGAGATATAAG
CTCAACATCAAGGCTGCCATTCGATACAATTGAGCAAAGTTATAATTTAGCAACGATGTT
TCCATTCAAAGGACGCAATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCA
GTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACANNA
AGCAACCACCACCACCAGCACCAGTCATCTGCTAATTCGGCAATCCATCGACAGCCAAAG
CGAAACTGGCTAGGCANTTAATCGTGCCCGTGGCACGAACGGCTGCAGCAGACCCGCGGC
CAAGTCTGCGCCCCTGTGACAAGGGCACGAGCCGCGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3055#0      ------------------------------------------------------------
consensus_3055#1      AGATCGGCACGAGGGTTNGACGTATCGAAACTAATTTCCTGTTTTGAGTTGAGATATAAG 60
                                                                                  

consensus_3055#0      ----------------------GATACATTTGAGCAAAGTTATAATTTAGCGA-GATGTT 37
consensus_3055#1      CTCAACATCAAGGCTGCCATTCGATACAATTGAGCAAAGTTATAATTTAGCAACGATGTT 120
                                            ****** ********************** * ******

consensus_3055#0      TTCATTCAAAGGACGTCATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCA 97
consensus_3055#1      TCCATTCAAAGGACGCAATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCA 180
                      * *************  *******************************************

consensus_3055#0      GTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACAGAA 157
consensus_3055#1      GTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACANNA 240
                      *********************************************************  *

consensus_3055#0      -GCAACCACCACCACCAGCACCA-TCATCTG-TAATTCGGCAATCCATCGACA-CCAAAG 213
consensus_3055#1      AGCAACCACCACCACCAGCACCAGTCATCTGCTAATTCGGCAATCCATCGACAGCCAAAG 300
                       ********************** ******* ********************* ******

consensus_3055#0      CGAAACTGG-TAGGCATT-AATCGTGCCCT--GCACGAACGGCTACAGCAGACCCGCGCC 269
consensus_3055#1      CGAAACTGGCTAGGCANTTAATCGTGCCCGTGGCACGAACGGCTGCAGCAGACCCGCGGC 360
                      ********* ****** * **********   ************ ************* *

consensus_3055#0      --AATCTGCGCCCCT----TACAAGCACGAGCCGCACAGTTACAGCACCGCTTCGACGAG 323
consensus_3055#1      CAAGTCTGCGCCCCTGTGACAAGGGCACGAGCCGCGAC---------------------- 398
                        * ***********     *   ***********                         

consensus_3055#0      TACCAGCGTACCGCCGGCGCACGGCGACCGCCGTCATCCGGGCTTGCTGCCAGGGGGGCT 383
consensus_3055#1      ------------------------------------------------------------
                                                                                  

consensus_3055#0      CGCACCGAGCGCAATCAACTGCTCCAGGAAGCCCATCGACTTCGGGCCGCTGTCGAACGA 443
consensus_3055#1      ------------------------------------------------------------
                                                                                  

consensus_3055#0      AAGTTACAGGGCTTCGGTACGCTGGACCAGCGCTACCGAAGCATGCGAACGTTACTCGAG 503
consensus_3055#1      ------------------------------------------------------------
                                                                                  

consensus_3055#0      CCGAAAACGAAGAGCGCTGGACTGCCCCGGGCATGGCTCGATCGGGATACCGAGCGGCAG 563
consensus_3055#1      ------------------------------------------------------------
                                                                                  

consensus_3055#0      ATGGAGTTGAACGAGCGCATCTACAAGAACATCATCGACCTGCTAGTGCACCTGATCGAG 623
consensus_3055#1      ------------------------------------------------------------
                                                                                  

consensus_3055#0      TGTCCGGTTAACATCATACACGAC 647
consensus_3055#1      ------------------------