cluster # 3056

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Anopheles gambiae
cluster # 3056 cluster # 3056 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3056#0 length = 683 sequences # 1

consensus_3056#1 length = 140 sequences # 1

consensusID : consensus_3056#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGATAAAATCATCACCACCGACGCTAATCGGGTTTAAAGGTCGTCGCGAAACTCTTCCAGCTTGTGGTTTCTGCACGATTCCCTTTTTGTTTTTTTTTTGCCTTCATTTCGTTGTAATTTAACGGTATAGTTGCATTTTAGTGAGCAGTTTTCTGGTTTCCCGTTTTCTTTTGACCAACCCCAAACGTCAATCATCGTCCCCTCTTTCTCTTCCTCAGCTCCTAGTATCCAGAGGCGCAGAGCAACCCCTACGCGCGATTAACACATTTAAGGAGTTTTTACCGTAGGCTAGGCGTAAAGGCACGCGTGGAAGTAACGCGTGGAAGTAACAAAGTTATGCATTTTCCCAAGGGCTAGCAATGGTACAAGGGACAACTTTTGGAAGGTAGGTGGGTGCCAAACACATGCCAAATTAGAAGCAGTAGCAGCACTAGCGATCAAAGGATGCATTAAAAGAAAGTTTAATTGATTGTCAAAATTCTCACCAAAGAGACTTATTTTCGTGACCAAAAAAGGTTAGTGAACGAACATAGGGCAGAAATTTGTTTGAAATTTGAAACACTTTCAACACAATTTTCGGTATCAAAACAAACACGTAAAGCAGATCCTCCTTCTTTCACTTCTTTAAAGCAAACTAGAATACAGAGAGAAAAAACAAAACAACCAGCCCTTACAAAAAGGA]

[+] EMBL BM641823             [CCGATAAAATCATCACCACCGACGCTAATCGGGTTTAAAGGTCGTCGCGAAACTCTTCCAGCTTGTGGTTTCTGCACGATTCCCTTTTTGTTTTTTTTTTGCCTTCATTTCGTTGTAATTTAACGGTATAGTTGCATTTTAGTGAGCAGTTTTCTGGTTTCCCGTTTTCTTTTGACCAACCCCAAACGTCAATCATCGTCCCCTCTTTCTCTTCCTCAGCTCCTAGTATCCAGAGGCGCAGAGCAACCCCTACGCGCGATTAACACATTTAAGGAGTTTTTACCGTAGGCTAGGCGTAAAGGCACGCGTGGAAGTAACGCGTGGAAGTAACAAAGTTATGCATTTTCCCAAGGGCTAGCAATGGTACAAGGGACAACTTTTGGAAGGTAGGTGGGTGCCAAACACATGCCAAATTAGAAGCAGTAGCAGCACTAGCGATCAAAGGATGCATTAAAAGAAAGTTTAATTGATTGTCAAAATTCTCACCAAAGAGACTTATTTTCGTGACCAAAAAAGGTTAGTGAACGAACATAGGGCAGAAATTTGTTTGAAATTTGAAACACTTTCAACACAATTTTCGGTATCAAAACAAACACGTAAAGCAGATCCTCCTTCTTTCACTTCTTTAAAGCAAACTAGAATACAGAGAGAAAAAACAAAACAACCAGCCCTTACAAAAAGGA]




>consensus_3056#0
CCGATAAAATCATCACCACCGACGCTAATCGGGTTTAAAGGTCGTCGCGAAACTCTTCCA
GCTTGTGGTTTCTGCACGATTCCCTTTTTGTTTTTTTTTTGCCTTCATTTCGTTGTAATT
TAACGGTATAGTTGCATTTTAGTGAGCAGTTTTCTGGTTTCCCGTTTTCTTTTGACCAAC
CCCAAACGTCAATCATCGTCCCCTCTTTCTCTTCCTCAGCTCCTAGTATCCAGAGGCGCA
GAGCAACCCCTACGCGCGATTAACACATTTAAGGAGTTTTTACCGTAGGCTAGGCGTAAA
GGCACGCGTGGAAGTAACGCGTGGAAGTAACAAAGTTATGCATTTTCCCAAGGGCTAGCA
ATGGTACAAGGGACAACTTTTGGAAGGTAGGTGGGTGCCAAACACATGCCAAATTAGAAG
CAGTAGCAGCACTAGCGATCAAAGGATGCATTAAAAGAAAGTTTAATTGATTGTCAAAAT
TCTCACCAAAGAGACTTATTTTCGTGACCAAAAAAGGTTAGTGAACGAACATAGGGCAGA
AATTTGTTTGAAATTTGAAACACTTTCAACACAATTTTCGGTATCAAAACAAACACGTAA
AGCAGATCCTCCTTCTTTCACTTCTTTAAAGCAAACTAGAATACAGAGAGAAAAAACAAA
ACAACCAGCCCTTACAAAAAGGA

consensusID : consensus_3056#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 140
fasta sequence

                              [TTTTGACCAACCCCAAACGGCAATCAACGGCCCCGCATTCTCTTCCTCAGCTCCGAGGATCCAGAGGCGCAGAGCAACCCCTACGCGCGATTAACACACGTAAGGAGTTTTCACCGCAGGCTAGGCGTAAAGGCACGCGG]

[+] EMBL BX618654             [TTTTGACCAACCCCAAACGGCAATCAACGGCCCCGCATTCTCTTCCTCAGCTCCGAGGATCCAGAGGCGCAGAGCAACCCCTACGCGCGATTAACACACGTAAGGAGTTTTCACCGCAGGCTAGGCGTAAAGGCACGCGG]




>consensus_3056#1
TTTTGACCAACCCCAAACGGCAATCAACGGCCCCGCATTCTCTTCCTCAGCTCCGAGGAT
CCAGAGGCGCAGAGCAACCCCTACGCGCGATTAACACACGTAAGGAGTTTTCACCGCAGG
CTAGGCGTAAAGGCACGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3056#0      CCGATAAAATCATCACCACCGACGCTAATCGGGTTTAAAGGTCGTCGCGAAACTCTTCCA 60
consensus_3056#1      ------------------------------------------------------------
                                                                                  

consensus_3056#0      GCTTGTGGTTTCTGCACGATTCCCTTTTTGTTTTTTTTTTGCCTTCATTTCGTTGTAATT 120
consensus_3056#1      ------------------------------------------------------------
                                                                                  

consensus_3056#0      TAACGGTATAGTTGCATTTTAGTGAGCAGTTTTCTGGTTTCCCGTTTTCTTTTGACCAAC 180
consensus_3056#1      -------------------------------------------------TTTTGACCAAC 11
                                                                       ***********

consensus_3056#0      CCCAAACGTCAATCATCGTCCCCTCTTTCTCTTCCTCAGCTCCTAGTATCCAGAGGCGCA 240
consensus_3056#1      CCCAAACGGCAATCAACGGCCCCGCATTCTCTTCCTCAGCTCCGAGGATCCAGAGGCGCA 71
                      ******** ****** ** **** * ***************** ** *************

consensus_3056#0      GAGCAACCCCTACGCGCGATTAACACATTTAAGGAGTTTTTACCGTAGGCTAGGCGTAAA 300
consensus_3056#1      GAGCAACCCCTACGCGCGATTAACACACGTAAGGAGTTTTCACCGCAGGCTAGGCGTAAA 131
                      ***************************  *********** **** **************

consensus_3056#0      GGCACGCGTGGAAGTAACGCGTGGAAGTAACAAAGTTATGCATTTTCCCAAGGGCTAGCA 360
consensus_3056#1      GGCACGCGG--------------------------------------------------- 140
                      ********                                                    

consensus_3056#0      ATGGTACAAGGGACAACTTTTGGAAGGTAGGTGGGTGCCAAACACATGCCAAATTAGAAG 420
consensus_3056#1      ------------------------------------------------------------
                                                                                  

consensus_3056#0      CAGTAGCAGCACTAGCGATCAAAGGATGCATTAAAAGAAAGTTTAATTGATTGTCAAAAT 480
consensus_3056#1      ------------------------------------------------------------
                                                                                  

consensus_3056#0      TCTCACCAAAGAGACTTATTTTCGTGACCAAAAAAGGTTAGTGAACGAACATAGGGCAGA 540
consensus_3056#1      ------------------------------------------------------------
                                                                                  

consensus_3056#0      AATTTGTTTGAAATTTGAAACACTTTCAACACAATTTTCGGTATCAAAACAAACACGTAA 600
consensus_3056#1      ------------------------------------------------------------
                                                                                  

consensus_3056#0      AGCAGATCCTCCTTCTTTCACTTCTTTAAAGCAAACTAGAATACAGAGAGAAAAAACAAA 660
consensus_3056#1      ------------------------------------------------------------
                                                                                  

consensus_3056#0      ACAACCAGCCCTTACAAAAAGGA 683
consensus_3056#1      -----------------------