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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3058 cluster # 3058       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3058#0 length = 461 sequences # 1  
consensus_3058#1 length = 397 sequences # 1  

consensusID : consensus_3058#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence
                              [AATCCCCCGAGGTTAAGTGTTTTGGCGCTGTATCATTAACGCGCTGTTCCATTCGATGATACTGTTTTGGTTGTCGTACAAGATCTACGAAAAGGATGTCATCTGGAAGAACGGACGCGATGGTGGATATTTAGTGTTAGGCAACATAGTTTACACGTACGTAGTCGTGACGGTGTGCTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGGCTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACCAGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGCTGGACTACTGTTAATTCCACTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTACAGAAACTCTAGAAAGGATAATATACTAACACCACCACTGAAGGAAT]

[+] EMBL AL932265             [AATCCCCCGAGGTTAAGTGTTTTGGCGCTGTATCATTAACGCGCTGTTCCATTCGATGATACTGTTTTGGTTGTCGTACAAGATCTACGAAAAGGATGTCATCTGGAAGAACGGACGCGATGGTGGATATTTAGTGTTAGGCAACATAGTTTACACGTACGTAGTCGTGACGGTGTGCTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGGCTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACCAGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGCTGGACTACTGTTAATTCCACTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTACAGAAACTCTAGAAAGGATAATATACTAACACCACCACTGAAGGAAT]


>consensus_3058#0 AATCCCCCGAGGTTAAGTGTTTTGGCGCTGTATCATTAACGCGCTGTTCCATTCGATGAT ACTGTTTTGGTTGTCGTACAAGATCTACGAAAAGGATGTCATCTGGAAGAACGGACGCGA TGGTGGATATTTAGTGTTAGGCAACATAGTTTACACGTACGTAGTCGTGACGGTGTGCTT GAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGGCTC GATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACCAGT GGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGCTGG ACTACTGTTAATTCCACTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTACAGAAA CTCTAGAAAGGATAATATACTAACACCACCACTGAAGGAAT



consensusID : consensus_3058#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence
                              [GCTCAGCAGAATCGCCACGAGGTCTATNGTGGATATTTAGTGTTAGGCCAACATAGTTTACACGTACGTAGTCGTGACGGTGTGCTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGGCTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACCAGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGCTGGACTACTGTGTAATTCCAGCTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTACAGAAACTCTAGAAAGGATAATATACTAACACCAGNCGACTGAAGGAATCCAGATCTTCAGAGACCGAAGGCAT]

[+] EMBL BX466464             [GCTCAGCAGAATCGCCACGAGGTCTATNGTGGATATTTAGTGTTAGGCCAACATAGTTTACACGTACGTAGTCGTGACGGTGTGCTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGGCTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACCAGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGCTGGACTACTGTGTAATTCCAGCTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTACAGAAACTCTAGAAAGGATAATATACTAACACCAGNCGACTGAAGGAATCCAGATCTTCAGAGACCGAAGGCAT]


>consensus_3058#1 GCTCAGCAGAATCGCCACGAGGTCTATNGTGGATATTTAGTGTTAGGCCAACATAGTTTA CACGTACGTAGTCGTGACGGTGTGCTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTG GTTGACCCATTGTTCTATTTGGGGCTCGATACTGCTTTGGTTTATATTTATATTCATTTA CAGCAACATTTGGCCAGCATTACCAGTGGGTGCGGTTTTCACGGGCATGGACGATATGGT CTTTACGACGCCAGTGTTCTGGGCTGGACTACTGTGTAATTCCAGCTATCCGCACTGCTT TTCGACGTGTCTTGGAACGCGTACAGAAACTCTAGAAAGGATAATATACTAACACCAGNC GACTGAAGGAATCCAGATCTTCAGAGACCGAAGGCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3058#0      AATCCCCCGAGGTTAAGTGTTTTGGCGCTGTATCATTAACGCGCTGTTCCATTCGATGAT 60
consensus_3058#1      ------------------------------------------------------------
                                                                                  

consensus_3058#0      ACTGTTTTGGTTGTCGTACAAGATCTACGAAAAGGATGTCATCTGGAAGA--ACGGACGC 118
consensus_3058#1      ------------------------------------GCTCAGCAGAATCGCCACGAGGTC 24
                                                            *** * * *     ***    *

consensus_3058#0      GATGGTGGATATTTAGTGTTAGGC-AACATAGTTTACACGTACGTAGTCGTGACGGTGTG 177
consensus_3058#1      TATNGTGGATATTTAGTGTTAGGCCAACATAGTTTACACGTACGTAGTCGTGACGGTGTG 84
                       ** ******************** ***********************************

consensus_3058#0      CTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGG 237
consensus_3058#1      CTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGG 144
                      ************************************************************

consensus_3058#0      CTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACC 297
consensus_3058#1      CTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACC 204
                      ************************************************************

consensus_3058#0      AGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGC 357
consensus_3058#1      AGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGC 264
                      ************************************************************

consensus_3058#0      TGGACTACTGT-TAATTCCA-CTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTAC 415
consensus_3058#1      TGGACTACTGTGTAATTCCAGCTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTAC 324
                      *********** ******** ***************************************

consensus_3058#0      AGAAACTCTAGAAAGGATAATATACTAACACCACC--ACTGAAGGAAT------------ 461
consensus_3058#1      AGAAACTCTAGAAAGGATAATATACTAACACCAGNCGACTGAAGGAATCCAGATCTTCAG 384
                      *********************************    ***********            

consensus_3058#0      -------------
consensus_3058#1      AGACCGAAGGCAT 397
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)