These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [CACTACAACTGCTGCGCCTCAAATCGACGGCCGATCCGGTGACGTTGGACGACGAGTCGTTTGCCCGCACGATCGAGGGCCATCTGCGGGTGCGGCTGCGGCACGACGAGCGTCGCCATCGAGATGCGATGGAGAGCGACTGTCCGCATCTGGTAGCCGCCGGAAAGTATTAGGCGCTGGATGATCATCTGCAGGAGGCACGCGCGCTGGTCGAAGTTTCGACCGATGAGTACAGTGAGCTGTGTGCGGAGGTTTGGGCACTGCTAGCCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGGGCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGATCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACTATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCGCTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGGTAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGTTTATCGATCCGCGGC] [+] EMBL BX602485 [CACTACAACTGCTGCGCCTCAAATCGACGGCCGATCCGGTGACGTTGGACGACGAGTCGTTTGCCCGCACGATCGAGGGCCATCTGCGGGTGCGGCTGCGGCACGACGAGCGTCGCCATCGAGATGCGATGGAGAGCGACTGTCCGCATCTGGTAGCCGCCGGAAAGTATTAGGCGCTGGATGATCATCTGCAGGAGGCACGCGCGCTGGTCGAAGTTTCGACCGATGAGTACAGTGAGCTGTGTGCGGAGGTTTGGGCACTGCTAGCCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGGGCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGATCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACTATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCGCTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGGTAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGTTTATCGATCCGCGGC] consensusID : consensus_3060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [AATCCCCGAGGTTAACCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGGGCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGATCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACTATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCGCTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGGTAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGTTTATCGATCCGCGGCGGCTGGAAGCGTTCATGGCGATTGCCGGCATACGCATGATGAGCTCTTCGCACGGTCCCATCAACATGTTCGAGCACGTCGACTGGGTGAAGGCACTGGCGCTGCACCTGTGGTACGTGTGCCCACCGACCGCGTCCATTACGGACGCACTGGTGGGCTACG] [+] EMBL AL932266 [AATCCCCGAGGTTAACCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGGGCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGATCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACTATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCGCTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGGTAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGTTTATCGATCCGCGGCGGCTGGAAGCGTTCATGGCGATTGCCGGCATACGCATGATGAGCTCTTCGCACGGTCCCATCAACATGTTCGAGCACGTCGACTGGGTGAAGGCACTGGCGCTGCACCTGTGGTACGTGTGCCCACCGACCGCGTCCATTACGGACGCACTGGTGGGCTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3060#0 CACTACAACTGCTGCGCCTCAAATCGACGGCCGATCCGGTGACGTTGGACGACGAGTCGT 60 consensus_3060#1 ------------------------------------------------------------ consensus_3060#0 TTGCCCGCACGATCGAGGGCCATCTGCGGGTGCGGCTGCGGCACGACGAGCGTCGCCATC 120 consensus_3060#1 ------------------------------------------------------------ consensus_3060#0 GAGATGCGATGGAGAGCGACTGTCCGCATCTGGTAGCCGCCGGAAAGTATTAGGCGCTGG 180 consensus_3060#1 ------------------------------------------------------------ consensus_3060#0 ATGATCATCTGCAGGAGGCACGCGCGCTGGTCGAAGTTTCGACCGATGAGTACAGTGAGC 240 consensus_3060#1 ------------------------------------------------------------ consensus_3060#0 TGTGTGCGGAGGTTTGGGCACTGCTAGCCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGG 300 consensus_3060#1 --------AATCCCCGAG----GTTAACCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGG 48 * * * * ** ********************************* consensus_3060#0 GCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGA 360 consensus_3060#1 GCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGA 108 ************************************************************ consensus_3060#0 TCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACT 420 consensus_3060#1 TCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACT 168 ************************************************************ consensus_3060#0 ATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCG 480 consensus_3060#1 ATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCG 228 ************************************************************ consensus_3060#0 CTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGG 540 consensus_3060#1 CTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGG 288 ************************************************************ consensus_3060#0 TAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGT 600 consensus_3060#1 TAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGT 348 ************************************************************ consensus_3060#0 TTATCGATCCGCGGC--------------------------------------------- 615 consensus_3060#1 TTATCGATCCGCGGCGGCTGGAAGCGTTCATGGCGATTGCCGGCATACGCATGATGAGCT 408 *************** consensus_3060#0 ------------------------------------------------------------ consensus_3060#1 CTTCGCACGGTCCCATCAACATGTTCGAGCACGTCGACTGGGTGAAGGCACTGGCGCTGC 468 consensus_3060#0 --------------------------------------------------------- consensus_3060#1 ACCTGTGGTACGTGTGCCCACCGACCGCGTCCATTACGGACGCACTGGTGGGCTACG 525 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||