These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 831 fasta sequence [TTTTTTTTTTTGGATTATGTCTATTTTGTCGCGTCCTTCGTTCCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTTTATCATTAGCTTATCATTTTCACTACTAGCTCCCCTGCCCGAGTCTCCGTTTGCGTCCCGTAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCTTCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGGCCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATGATTGAAAATGGTTCCGCGGTTTGGCTTGTGAATAGAGAAGAACCCCTTTTTTCACTCCAAACACTCCCGCAATGATTGGATGCAGTTTAGTTTCGACAATTAAATGGATTCAATGGAGAAATAAAACAAATCACTTAAAACGTTTAAACCCACGTGACAACAACAAGCAGCTTAGAAGGGGTACGTAAATGCAACTAAAGTAAACTATTCTAATGTGCCCCCGGGAGCCGTCTTACCTACATTGCAATTCGATTCGAATTCTAGCTCCGTATTGCTCTCCTTCCCGACCGTTCTCGTGACAAATTAACGAACGATTCTTCAACATCGAAACCAATGTTGTTTAAACCTGGCTGCAAAATCAAACTCTGCTCTTCAACGATCGGGTGGTGCGCAGTATTTGCTGTGAACTCTTGTGCAACCTCTTGGCATGAGGTGGGGGGGTAGGAGATGTTATGAATGGCCATCGATCCATTCTACCTCCCCAGTTGCCGCCATAT] [+] EMBL CNS08PAA [TTTTTTTTTTTGGATTATGTCTATTTTGTCGCGTCCTTCGTTCCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTTTATCATTAGCTTATCATTTTCACTACTAGCTCCCCTGCCCGAGTCTCCGTTTGCGTCCCGTAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCTTCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGGCCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATGATTGAAAATGGTTCCGCGGTTTGGCTTGTGAATAGAGAAGAACCCCTTTTTTCACTCCAAACACTCCCGCAATGATTGGATGCAGTTTAGTTTCGACAATTAAATGGATTCAATGGAGAAATAAAACAAATCACTTAAAACGTTTAAACCCACGTGACAACAACAAGCAGCTTAGAAGGGGTACGTAAATGCAACTAAAGTAAACTATTCTAATGTGCCCCCGGGAGCCGTCTTACCTACATTGCAATTCGATTCGAATTCTAGCTCCGTATTGCTCTCCTTCCCGACCGTTCTCGTGACAAATTAACGAACGATTCTTCAACATCGAAACCAATGTTGTTTAAACCTGGCTGCAAAATCAAACTCTGCTCTTCAACGATCGGGTGGTGCGCAGTATTTGCTGTGAACTCTTGTGCAACCTCTTGGCATGAGGTGGGGGGGTAGGAGATGTTATGAATGGCCATCGATCCATTCTACCTCCCCAGTTGCCGCCATAT] consensusID : consensus_3070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [TTTTTTTTTTNNTTTTTTTTATTTTTGGAATTTGTGTCTATTTTGTCGCGTCCCTTCGTTCCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTTTATCATTAGCTTATCATTTTCACTACTAGCTCCCTGGCCCGAGTCTCCGTTTGCGTCCCGTAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCTTCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGGCCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATCATTGAAAATGGTTCCGTCGTTTGGCTTGTGAATAGAGATAACCCCCTGTGCCGATCT] [-] EMBL BX466386 [TTTTTTTTTTNNTTTTTTTTATTTTTGGAATTTGTGTCTATTTTGTCGCGTCCCTTCGTTCCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTTTATCATTAGCTTATCATTTTCACTACTAGCTCCCTGGCCCGAGTCTCCGTTTGCGTCCCGTAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCTTCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGGCCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATCATTGAAAATGGTTCCGTCGTTTGGCTTGTGAATAGAGATAACCCCCTGTGCCGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3070#0 ---------------TTTTTTTTTTTGGA--TTATGTCTATTTTGTCGCGTCC-TTCGTT 42 consensus_3070#1 TTTTTTTTTTNNTTTTTTTTATTTTTGGAATTTGTGTCTATTTTGTCGCGTCCCTTCGTT 60 ***** ******** ** ******************* ****** consensus_3070#0 CCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTT 102 consensus_3070#1 CCGCTCAACTTACACACACACGCTGCAAGAAAACGGTGCACAACTTTGTATCGTTTGTTT 120 ************************************************************ consensus_3070#0 TATCATTAGCTTATCATTTTCACTACTAGCTCCCCTGCCCGAGTCTCCGTTTGCGTCCCG 162 consensus_3070#1 TATCATTAGCTTATCATTTTCACTACTAGCTCCCTGGCCCGAGTCTCCGTTTGCGTCCCG 180 ********************************** ************************ consensus_3070#0 TAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCT 222 consensus_3070#1 TAATCATTGAATTCGATACCGTTCACGCAATGGGATGTTGGATAAGTCTTTTTTTGTTCT 240 ************************************************************ consensus_3070#0 TCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGG 282 consensus_3070#1 TCCCTGCACACAATTCTAACCGGTCAAACACATACGACACGATCCCGAAGCTCGTCTTGG 300 ************************************************************ consensus_3070#0 CCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATGATTGAAAA 342 consensus_3070#1 CCTCAAGAATAATTTAAAGAATTAAACCCCTCGCCACACATTCCCGATGATCATTGAAAA 360 *************************************************** ******** consensus_3070#0 TGGTTCCGCGGTTTGGCTTGTGAATAGAGAAGAACCCCTTTTTTCACTCCAAACACTCCC 402 consensus_3070#1 TGGTTCCGTCGTTTGGCTTGTGAATAGAGAT-AACCCCCTGTGCCGATCT---------- 409 ******** ******************** ****** * * * ** consensus_3070#0 GCAATGATTGGATGCAGTTTAGTTTCGACAATTAAATGGATTCAATGGAGAAATAAAACA 462 consensus_3070#1 ------------------------------------------------------------ consensus_3070#0 AATCACTTAAAACGTTTAAACCCACGTGACAACAACAAGCAGCTTAGAAGGGGTACGTAA 522 consensus_3070#1 ------------------------------------------------------------ consensus_3070#0 ATGCAACTAAAGTAAACTATTCTAATGTGCCCCCGGGAGCCGTCTTACCTACATTGCAAT 582 consensus_3070#1 ------------------------------------------------------------ consensus_3070#0 TCGATTCGAATTCTAGCTCCGTATTGCTCTCCTTCCCGACCGTTCTCGTGACAAATTAAC 642 consensus_3070#1 ------------------------------------------------------------ consensus_3070#0 GAACGATTCTTCAACATCGAAACCAATGTTGTTTAAACCTGGCTGCAAAATCAAACTCTG 702 consensus_3070#1 ------------------------------------------------------------ consensus_3070#0 CTCTTCAACGATCGGGTGGTGCGCAGTATTTGCTGTGAACTCTTGTGCAACCTCTTGGCA 762 consensus_3070#1 ------------------------------------------------------------ consensus_3070#0 TGAGGTGGGGGGGTAGGAGATGTTATGAATGGCCATCGATCCATTCTACCTCCCCAGTTG 822 consensus_3070#1 ------------------------------------------------------------ consensus_3070#0 CCGCCATAT 831 consensus_3070#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||