These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3087#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [GGCAGTGCTGTGCAGCCATCTTCATTATCGTCGTGGCTGCCGAACGGTGTGGCAGCGAGCGATCGAGCGAAAGGCACAAATCGCAAACGGCAGCCACTTTTCCGGTGGAAGGAAACCACCGAAAGGGTTTGTTCCAGTAGCGGCAACGCTTGGAGCGACAAAGCGCGACCAGGAATGGTCTGGAATTTTCCACAGTTGTTAGACCGAACACACGGCCCCACCCCCGTAGCAAGCACATTGAGTGTGTGTGTGTGTGTGAGTGTGTTTAATTGCATTAAAAAAAAAAGACAAAACAATGCACACACTACAATCGAACGGAAAAGCGAACGCTAATTAGTGTCTGTGAGTGTACGCATGTGTATGTGTGTGTACGTTTGTGTTGTGACGTTTGTAGCAAATTCTTAATCACATTAGACAAAAACAGCAAAAAAGGGGCATTTTTCTTCATCAGCGCCAACTTCGATAAGGTTGATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACACAAAAACACTCACACACACAGCATCCTCTTCTACCCCTTCCCCTCACCCTCTAGCATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAACAAACGTCGGTCGTCGTCGCTGACGGGAA] [+] EMBL BX611519 [GGCAGTGCTGTGCAGCCATCTTCATTATCGTCGTGGCTGCCGAACGGTGTGGCAGCGAGCGATCGAGCGAAAGGCACAAATCGCAAACGGCAGCCACTTTTCCGGTGGAAGGAAACCACCGAAAGGGTTTGTTCCAGTAGCGGCAACGCTTGGAGCGACAAAGCGCGACCAGGAATGGTCTGGAATTTTCCACAGTTGTTAGACCGAACACACGGCCCCACCCCCGTAGCAAGCACATTGAGTGTGTGTGTGTGTGTGAGTGTGTTTAATTGCATTAAAAAAAAAAGACAAAACAATGCACACACTACAATCGAACGGAAAAGCGAACGCTAATTAGTGTCTGTGAGTGTACGCATGTGTATGTGTGTGTACGTTTGTGTTGTGACGTTTGTAGCAAATTCTTAATCACATTAGACAAAAACAGCAAAAAAGGGGCATTTTTCTTCATCAGCGCCAACTTCGATAAGGTTGATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACACAAAAACACTCACACACACAGCATCCTCTTCTACCCCTTCCCCTCACCCTCTAGCATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAACAAACGTCGGTCGTCGTCGCTGACGGGAA] consensusID : consensus_3087#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [CNTGGTCGTATGGTGGTCGTGGTAACGTCTGGTGGTTTGTCGACCGTGATGTACGTCAAATTCCTGAATCCACATGTNNCACAAAAACAAGCAAGAAAAGGGGCATTTGNTCTANCATCAGCGCCAACTTCGATNNAGGTTGATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACACAAAAACACTCACACACACAGCATCCTCNTGTCTGACCCCTTCCCCTCAACCCGTCTANNATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAGCAAACGTCGGTCGTCGTCGCTGACGGGAATGTCAAGAAATTGCGTGGTACGAAAAGTGTGCANAATNCCCTCNGGGAACCTCGGGAACTGGGGGGCGGAGGTAAGAGGAGGAAAGCGGGGNGGAAAAGGGGGTGGC] [+] EMBL BX619181 [CNTGGTCGTATGGTGGTCGTGGTAACGTCTGGTGGTTTGTCGACCGTGATGTACGTCAAATTCCTGAATCCACATGTNNCACAAAAACAAGCAAGAAAAGGGGCATTTGNTCTANCATCAGCGCCAACTTCGATNNAGGTTGATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACACAAAAACACTCACACACACAGCATCCTCNTGTCTGACCCCTTCCCCTCAACCCGTCTANNATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAGCAAACGTCGGTCGTCGTCGCTGACGGGAATGTCAAGAAATTGCGTGGTACGAAAAGTGTGCANAATNCCCTCNGGGAACCTCGGGAACTGGGGGGCGGAGGTAAGAGGAGGAAAGCGGGGNGGAAAAGGGGGTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3087#0 GGCAGTGCTGTGCAGCCATCTTCATTATCGTCGTGGCTGCCGAACGGTGTGGCAGCGAGC 60 consensus_3087#1 ------------------------------------------------------------ consensus_3087#0 GATCGAGCGAAAGGCACAAATCGCAAACGGCAGCCACTTTTCCGGTGGAAGGAAACCACC 120 consensus_3087#1 ------------------------------------------------------------ consensus_3087#0 GAAAGGGTTTGTTCCAGTAGCGGCAACGCTTGGAGCGACAAAGCGCGACCAGGAATGGTC 180 consensus_3087#1 ------------------------------------------------------------ consensus_3087#0 TGGAATTTTCCACAGTTGTTAGACCGAACACACGGCCCCACCCCCGTAGCAAGCACATTG 240 consensus_3087#1 ------------------------------------------------------------ consensus_3087#0 AGTGTGTGTGTGTGTGTGAGTGTGTTTAATTGCATTAAAAAAAAAAGACAAAACAATGCA 300 consensus_3087#1 ------------------------------------------------------------ consensus_3087#0 CACACTACAATCGAACGGAAAAGCGAACGCTAATTAGTGTCTGTGAGTGTACGCATGTGT 360 consensus_3087#1 -----------------------------------CNTGGTCGTATG-GTGGTCGTGGTA 24 ** ** * ** * ** consensus_3087#0 ATGTGTGTGTACGTTTGTGTTGTGACGTTTGTAGCAAATTCTTAAT----CACATTAGAC 416 consensus_3087#1 ACGTCTGGTGGTTTGTCGACCGTGATGTACGT--CAAATTCCTGAATCCACATGTNNCAC 82 * ** ** * * **** ** ** ******* * * ** * ** consensus_3087#0 AAAAACA-GCAA-AAAAGGGGCATTT-TTCT-TCATCAGCGCCAACTTCGATAA-GGTTG 471 consensus_3087#1 AAAAACAAGCAAGAAAAGGGGCATTTGNTCTANCATCAGCGCCAACTTCGATNNAGGTTG 142 ******* **** ************* *** ******************* ***** consensus_3087#0 ATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACA 531 consensus_3087#1 ATGAAAAGCGCAATCGATGGCAGCGCTTGTGAGGGAGAAATGCGAAAAAAATAATAAACA 202 ************************************************************ consensus_3087#0 CAAAAACACTCACACACACAGCATCCTCTTCT---ACCCCTTCCCCTCACCC--TCTAGC 586 consensus_3087#1 CAAAAACACTCACACACACAGCATCCTCNTGTCTGACCCCTTCCCCTCAACCCGTCTANN 262 **************************** * * ************** ** **** consensus_3087#0 ATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAACAAACGTCGGTCGTCGTCGCTG 646 consensus_3087#1 ATCGTAGTATGCCCGGCAGTGCGCGCGTCGTGTGCCAGCAAACGTCGGTCGTCGTCGCTG 322 ************************************* ********************** consensus_3087#0 ACGGGAA----------------------------------------------------- 653 consensus_3087#1 ACGGGAATGTCAAGAAATTGCGTGGTACGAAAAGTGTGCANAATNCCCTCNGGGAACCTC 382 ******* consensus_3087#0 ------------------------------------------------------ consensus_3087#1 GGGAACTGGGGGGCGGAGGTAAGAGGAGGAAAGCGGGGNGGAAAAGGGGGTGGC 436 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||