These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [TGGATCGTACGTACTGCTGCTGCCGCTGGAATTGTCGTAAGGATGGCTGCTACCGGTGGCATTCGGCCGTCATAGCAGCTGCTCATAGACACCGCTGTGCTGCTGCAGGATGCCCTGGTCCTGGTACGTCGACGTTGCCTTTCCCGCTGCTTGTGTGTTTGGTGCCCATCCCAACATCGCCCTCACCGCAATCGATCACCCAGATTGAGGCTCCAGCGGTGGAAGTAGTAGGAGCACATTCTCCAAGCCGATTGGGATTTTCCAAGCCTGGTTCTCGGTGTACCATCCTTCTGATGTTCCGCTGGCCGATCCTGGAGAGTCTTCCAAACACGCGGATGTGTGCCTTTGATGGAAACGGTTTATTGCGCGGATTCTAATTACACCTCGTAAAATGGTACCCGTTTTTCGGTCGCGATGTCGAGATGCCGCCGAGATGAAGCGTGCGAATTTGCGAATTGCGATGGCGAGAAATCACCCGATCGCGCACGAATCGCGCAGCTCATTCGCCTCCTCGAACACGAACCAATGTCCCAATGTCCAGCGTCATCTATCGGCGAGATTTAGTACTATTCAGAACCGCTGCATCTTTTACTGTCAACCGAAGCTCTACGCAAGGTGGATGCAATCCGAGATCAGGTGAGGACAGATAGAGACGAAGACTAAGAAATCATTAATTTATTTGCTATTTTCACCTTT] [+] EMBL BX628234 [TGGATCGTACGTACTGCTGCTGCCGCTGGAATTGTCGTAAGGATGGCTGCTACCGGTGGCATTCGGCCGTCATAGCAGCTGCTCATAGACACCGCTGTGCTGCTGCAGGATGCCCTGGTCCTGGTACGTCGACGTTGCCTTTCCCGCTGCTTGTGTGTTTGGTGCCCATCCCAACATCGCCCTCACCGCAATCGATCACCCAGATTGAGGCTCCAGCGGTGGAAGTAGTAGGAGCACATTCTCCAAGCCGATTGGGATTTTCCAAGCCTGGTTCTCGGTGTACCATCCTTCTGATGTTCCGCTGGCCGATCCTGGAGAGTCTTCCAAACACGCGGATGTGTGCCTTTGATGGAAACGGTTTATTGCGCGGATTCTAATTACACCTCGTAAAATGGTACCCGTTTTTCGGTCGCGATGTCGAGATGCCGCCGAGATGAAGCGTGCGAATTTGCGAATTGCGATGGCGAGAAATCACCCGATCGCGCACGAATCGCGCAGCTCATTCGCCTCCTCGAACACGAACCAATGTCCCAATGTCCAGCGTCATCTATCGGCGAGATTTAGTACTATTCAGAACCGCTGCATCTTTTACTGTCAACCGAAGCTCTACGCAAGGTGGATGCAATCCGAGATCAGGTGAGGACAGATAGAGACGAAGACTAAGAAATCATTAATTTATTTGCTATTTTCACCTTT] consensusID : consensus_3115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGGCGCTTTCCGTGCGCGGCCGTGTAGCGGTGGAGTAATTGCGCGATGGGTGTTGTGGGGATCGTACGTACTGCTGCTGCCGCTGGAATTGTCGTAAGGATGGCTGCTACCGGTGGCATTCGGCCGTCATAGCAGCTGCTCATAGACACCGCTGTGCTGCTGCAGGATGCCCTGGTCCTGGTACGTCGACGCTGCCTTTCCCGCTGCTTGTGTGTTTGGTGGTGCATACTATCTCACCACCCGGTATCGTCACTCGCCTGGTGGTGTTTCCCTTTTGTGTCCCGTAAACAGCCCATCCCAACATCGTCCTCACCGCAATCGGTCACCCAGATTGAGGCTCCAGCGGTGGAAGTAGTAGGCGCACGTTCTCCAAGCCGGTTGGGATTCTCGGTGTACCATCCTCCTTCCGCTGGCCGATCCTGGAGAGTCTTCCAAACACGCGGATGTGTGCCTTTGATGGAAACGGTTTATTGCGCGGATTCTAATTACACCTCGTAAAATGGTACCCGTTTTTCGGTCGCGATGTCGAGATGCCGCCGAGATGAAGCGTGCGAATTTGCGAATTGCGATGGCGAATTGCGAATCACCCGATCGCGCACGAATCGCGCAGCTCATTCGCCTCCTCGAACACGAACCAATGTCCCAATGTCCAGCGTCATCTATCGGCGAGATTTAGTACTATTC] [+] EMBL BM590887 [CCGGCGCTTTCCGTGCGCGGCCGTGTAGCGGTGGAGTAATTGCGCGATGGGTGTTGTGGGGATCGTACGTACTGCTGCTGCCGCTGGAATTGTCGTAAGGATGGCTGCTACCGGTGGCATTCGGCCGTCATAGCAGCTGCTCATAGACACCGCTGTGCTGCTGCAGGATGCCCTGGTCCTGGTACGTCGACGCTGCCTTTCCCGCTGCTTGTGTGTTTGGTGGTGCATACTATCTCACCACCCGGTATCGTCACTCGCCTGGTGGTGTTTCCCTTTTGTGTCCCGTAAACAGCCCATCCCAACATCGTCCTCACCGCAATCGGTCACCCAGATTGAGGCTCCAGCGGTGGAAGTAGTAGGCGCACGTTCTCCAAGCCGGTTGGGATTCTCGGTGTACCATCCTCCTTCCGCTGGCCGATCCTGGAGAGTCTTCCAAACACGCGGATGTGTGCCTTTGATGGAAACGGTTTATTGCGCGGATTCTAATTACACCTCGTAAAATGGTACCCGTTTTTCGGTCGCGATGTCGAGATGCCGCCGAGATGAAGCGTGCGAATTTGCGAATTGCGATGGCGAATTGCGAATCACCCGATCGCGCACGAATCGCGCAGCTCATTCGCCTCCTCGAACACGAACCAATGTCCCAATGTCCAGCGTCATCTATCGGCGAGATTTAGTACTATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3115#0 ----------------------------------------------------------TG 2 consensus_3115#1 CCGGCGCTTTCCGTGCGCGGCCGTGTAGCGGTGGAGTAATTGCGCGATGGGTGTTGTGGG 60 * consensus_3115#0 GATCGTACGTACTGCTGCTGCCGCTGGAATTGTCGTAAGGATGGCTGCTACCGGTGGCAT 62 consensus_3115#1 GATCGTACGTACTGCTGCTGCCGCTGGAATTGTCGTAAGGATGGCTGCTACCGGTGGCAT 120 ************************************************************ consensus_3115#0 TCGGCCGTCATAGCAGCTGCTCATAGACACCGCTGTGCTGCTGCAGGATGCCCTGGTCCT 122 consensus_3115#1 TCGGCCGTCATAGCAGCTGCTCATAGACACCGCTGTGCTGCTGCAGGATGCCCTGGTCCT 180 ************************************************************ consensus_3115#0 GGTACGTCGACGTTGCCTTTCCCGCTGCTTGTGTGTTTGGTG------------------ 164 consensus_3115#1 GGTACGTCGACGCTGCCTTTCCCGCTGCTTGTGTGTTTGGTGGTGCATACTATCTCACCA 240 ************ ***************************** consensus_3115#0 ----------------------------------------------------CCCATCCC 172 consensus_3115#1 CCCGGTATCGTCACTCGCCTGGTGGTGTTTCCCTTTTGTGTCCCGTAAACAGCCCATCCC 300 ******** consensus_3115#0 AACATCGCCCTCACCGCAATCGATCACCCAGATTGAGGCTCCAGCGGTGGAAGTAGTAGG 232 consensus_3115#1 AACATCGTCCTCACCGCAATCGGTCACCCAGATTGAGGCTCCAGCGGTGGAAGTAGTAGG 360 ******* ************** ************************************* consensus_3115#0 AGCACATTCTCCAAGCCGATTGGGATTTTCCAAGCCTGGTTCTCGGTGTACCATCCTTCT 292 consensus_3115#1 CGCACGTTCTCCAAGCCGGTTGGGATT--------------CTCGGTGTACCATCCTCCT 406 **** ************ ******** **************** ** consensus_3115#0 GATGTTCCGCTGGCCGATCCTGGAGAGTCTTCCAAACACGCGGATGTGTGCCTTTGATGG 352 consensus_3115#1 -----TCCGCTGGCCGATCCTGGAGAGTCTTCCAAACACGCGGATGTGTGCCTTTGATGG 461 ******************************************************* consensus_3115#0 AAACGGTTTATTGCGCGGATTCTAATTACACCTCGTAAAATGGTACCCGTTTTTCGGTCG 412 consensus_3115#1 AAACGGTTTATTGCGCGGATTCTAATTACACCTCGTAAAATGGTACCCGTTTTTCGGTCG 521 ************************************************************ consensus_3115#0 CGATGTCGAGATGCCGCCGAGATGAAGCGTGCGAATTTGCGAATTGCGATGGCGAG---- 468 consensus_3115#1 CGATGTCGAGATGCCGCCGAGATGAAGCGTGCGAATTTGCGAATTGCGATGGCGAATTGC 581 ******************************************************* consensus_3115#0 AAATCACCCGATCGCGCACGAATCGCGCAGCTCATTCGCCTCCTCGAACACGAACCAATG 528 consensus_3115#1 GAATCACCCGATCGCGCACGAATCGCGCAGCTCATTCGCCTCCTCGAACACGAACCAATG 641 *********************************************************** consensus_3115#0 TCCCAATGTCCAGCGTCATCTATCGGCGAGATTTAGTACTATTCAGAACCGCTGCATCTT 588 consensus_3115#1 TCCCAATGTCCAGCGTCATCTATCGGCGAGATTTAGTACTATTC---------------- 685 ******************************************** consensus_3115#0 TTACTGTCAACCGAAGCTCTACGCAAGGTGGATGCAATCCGAGATCAGGTGAGGACAGAT 648 consensus_3115#1 ------------------------------------------------------------ consensus_3115#0 AGAGACGAAGACTAAGAAATCATTAATTTATTTGCTATTTTCACCTTT 696 consensus_3115#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||