cluster # 3118

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Anopheles gambiae
cluster # 3118 cluster # 3118 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3118#0 length = 676 sequences # 1

consensus_3118#1 length = 600 sequences # 1

consensusID : consensus_3118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [CAAGAATCGCCCGAGGCNGTAAGCGATCGATCATGCACGATTTAAAGTTTGTAAGATATGTAAATCCTCTCTTTCTTTGGTTCTGCGTGCCACACACACACACCCCCCCCCCTTTTCCCCCTTTTTAAAAAAGTCTTTTTCAAAAACGNGTTTTTTTAAAACACCTTTTTTTACGCTCTCTACCGGGGGGGGCGAGTATTTTTCCCCCAGCCCCCCCACGAANTTTTTTCCGCGTTTTACNAGCTTTTCTAGCAAAAAACGCCCCCAAAAAACTTTTTTGGGGTTTTCAATTTACCCCCCTTTTATACTTTTGGGGAAAATTTTTTTTTCCCCCCCACATTTTTTTCGCGGGGGGGGCCCCACCACTTTTTACCCCCCAAAAAAGGCGGACGTCTTCCTGAGATTTTTTCNTTTTCTACACAAAANACACAACCGCCCGCGCGCGGNGACGTGCCACACACACGCGCTTCTCTCTTTTCTGCGGGGGGGGGGCTGCACGCGCGCGGGGGGCGAGGCCACACATNTTTTTTGCGTACTAANCAAACCGTTAACCGGCTACACCACACCATGCACACAAAAACCGGTCACACCCACAACCAGTGNCGCAACAAAAAACAACGCCTCTTTTTTTTTNACTACAAAACAAGACAAAAAAACACGCACAAACAAACCAAAA]

[+] EMBL AL934917             [CAAGAATCGCCCGAGGCNGTAAGCGATCGATCATGCACGATTTAAAGTTTGTAAGATATGTAAATCCTCTCTTTCTTTGGTTCTGCGTGCCACACACACACACCCCCCCCCCTTTTCCCCCTTTTTAAAAAAGTCTTTTTCAAAAACGNGTTTTTTTAAAACACCTTTTTTTACGCTCTCTACCGGGGGGGGCGAGTATTTTTCCCCCAGCCCCCCCACGAANTTTTTTCCGCGTTTTACNAGCTTTTCTAGCAAAAAACGCCCCCAAAAAACTTTTTTGGGGTTTTCAATTTACCCCCCTTTTATACTTTTGGGGAAAATTTTTTTTTCCCCCCCACATTTTTTTCGCGGGGGGGGCCCCACCACTTTTTACCCCCCAAAAAAGGCGGACGTCTTCCTGAGATTTTTTCNTTTTCTACACAAAANACACAACCGCCCGCGCGCGGNGACGTGCCACACACACGCGCTTCTCTCTTTTCTGCGGGGGGGGGGCTGCACGCGCGCGGGGGGCGAGGCCACACATNTTTTTTGCGTACTAANCAAACCGTTAACCGGCTACACCACACCATGCACACAAAAACCGGTCACACCCACAACCAGTGNCGCAACAAAAAACAACGCCTCTTTTTTTTTNACTACAAAACAAGACAAAAAAACACGCACAAACAAACCAAAA]




>consensus_3118#0
CAAGAATCGCCCGAGGCNGTAAGCGATCGATCATGCACGATTTAAAGTTTGTAAGATATG
TAAATCCTCTCTTTCTTTGGTTCTGCGTGCCACACACACACACCCCCCCCCCTTTTCCCC
CTTTTTAAAAAAGTCTTTTTCAAAAACGNGTTTTTTTAAAACACCTTTTTTTACGCTCTC
TACCGGGGGGGGCGAGTATTTTTCCCCCAGCCCCCCCACGAANTTTTTTCCGCGTTTTAC
NAGCTTTTCTAGCAAAAAACGCCCCCAAAAAACTTTTTTGGGGTTTTCAATTTACCCCCC
TTTTATACTTTTGGGGAAAATTTTTTTTTCCCCCCCACATTTTTTTCGCGGGGGGGGCCC
CACCACTTTTTACCCCCCAAAAAAGGCGGACGTCTTCCTGAGATTTTTTCNTTTTCTACA
CAAAANACACAACCGCCCGCGCGCGGNGACGTGCCACACACACGCGCTTCTCTCTTTTCT
GCGGGGGGGGGGCTGCACGCGCGCGGGGGGCGAGGCCACACATNTTTTTTGCGTACTAAN
CAAACCGTTAACCGGCTACACCACACCATGCACACAAAAACCGGTCACACCCACAACCAG
TGNCGCAACAAAAAACAACGCCTCTTTTTTTTTNACTACAAAACAAGACAAAAAAACACG
CACAAACAAACCAAAA

consensusID : consensus_3118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [AATGGAGTTAGGTTAAGTTTGGGAACAGCAGAACGGGAGTGTAGGGTTGGCAAAGAAAAACACACACACACACATACTAAAGATAATAAGGCTTGCAGGAGAGGCAACGGTGTTCGTGACTCGGGGAACTTGGGGGTTGGTATAGGGAATTTAAGTAGTACAAGCCGTAAGCGATCGATCATGCACGATTTAAAGTTTGTAAGATATGTAAATCCTCTCTTTCTTTGGTTCTGCGTGCCACACACACACACCTCTATATATTGTCCTTTTGAACATGTTCTTGATCTGCTCAGGTTTCGTGATTAGTGGTTAATAGTAAAAAAAATAAAAACCATGATCACACTCCTCCTACTGCGCTATACTGGGACGGATATCCGGTGAAACCAAACAGACACATACACACACGGTAGAACAGAACATATTAATTACACTGTTTAATAATAATAATCAACCGCAAGCCTGTCCCGCTGTATCGATCAACCAGTTTCCCCTCTTCCTGGCCCCCAGGTCCTTTTGGTTCCTCTTCCTGGTCCCCCAGGTCCTCTTCCCAGGCATGAGGAGAAGAGTATGTGGAATACGGCTTTAAGTTAAGTTGCAAGA]

[+] EMBL BX627116             [AATGGAGTTAGGTTAAGTTTGGGAACAGCAGAACGGGAGTGTAGGGTTGGCAAAGAAAAACACACACACACACATACTAAAGATAATAAGGCTTGCAGGAGAGGCAACGGTGTTCGTGACTCGGGGAACTTGGGGGTTGGTATAGGGAATTTAAGTAGTACAAGCCGTAAGCGATCGATCATGCACGATTTAAAGTTTGTAAGATATGTAAATCCTCTCTTTCTTTGGTTCTGCGTGCCACACACACACACCTCTATATATTGTCCTTTTGAACATGTTCTTGATCTGCTCAGGTTTCGTGATTAGTGGTTAATAGTAAAAAAAATAAAAACCATGATCACACTCCTCCTACTGCGCTATACTGGGACGGATATCCGGTGAAACCAAACAGACACATACACACACGGTAGAACAGAACATATTAATTACACTGTTTAATAATAATAATCAACCGCAAGCCTGTCCCGCTGTATCGATCAACCAGTTTCCCCTCTTCCTGGCCCCCAGGTCCTTTTGGTTCCTCTTCCTGGTCCCCCAGGTCCTCTTCCCAGGCATGAGGAGAAGAGTATGTGGAATACGGCTTTAAGTTAAGTTGCAAGA]




>consensus_3118#1
AATGGAGTTAGGTTAAGTTTGGGAACAGCAGAACGGGAGTGTAGGGTTGGCAAAGAAAAA
CACACACACACACATACTAAAGATAATAAGGCTTGCAGGAGAGGCAACGGTGTTCGTGAC
TCGGGGAACTTGGGGGTTGGTATAGGGAATTTAAGTAGTACAAGCCGTAAGCGATCGATC
ATGCACGATTTAAAGTTTGTAAGATATGTAAATCCTCTCTTTCTTTGGTTCTGCGTGCCA
CACACACACACCTCTATATATTGTCCTTTTGAACATGTTCTTGATCTGCTCAGGTTTCGT
GATTAGTGGTTAATAGTAAAAAAAATAAAAACCATGATCACACTCCTCCTACTGCGCTAT
ACTGGGACGGATATCCGGTGAAACCAAACAGACACATACACACACGGTAGAACAGAACAT
ATTAATTACACTGTTTAATAATAATAATCAACCGCAAGCCTGTCCCGCTGTATCGATCAA
CCAGTTTCCCCTCTTCCTGGCCCCCAGGTCCTTTTGGTTCCTCTTCCTGGTCCCCCAGGT
CCTCTTCCCAGGCATGAGGAGAAGAGTATGTGGAATACGGCTTTAAGTTAAGTTGCAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3118#0      CAAGAATCGCCCGAGGCNGTAAGCGATCGATCATGCACGATTTAAAGTTTGTAAGATATG 60
consensus_3118#1      ----------------------------AATGGAGTTAGGTT--AAGTTTGGGAACAGCA 30
                                                   **   *   * **  *******  *      

consensus_3118#0      TAAATCCTCTCTTTCTTTGGTTCTGCGTGCCACACACACACACCCCCCCCCCTTTTCCCC 120
consensus_3118#1      GAACGGGAGTGTAGGGTTGGCAAAGAAAAACACACACACACACATACTAAAGATAATAAG 90
                       **      * *    ****    *     *************   *      *      

consensus_3118#0      CTTTTTAAAAAAGTCTTTTTCAAAAACGNGTTTTTTTAAAACACCTTTTTTTACGCTCTC 180
consensus_3118#1      GCTTGCAGGAGAGGC---------AACGG-TGTTCGTGACTCGGGGAACTTGGGGGTTGG 140
                        **  *  * ** *         ****  * **  * *  *       **   * *   

consensus_3118#0      TACCGGGGGGGGCGAGTATTTTTCCCCCAGCCCCCCCACGAANTTTTTTCCGCGTTTTAC 240
consensus_3118#1      TAT-AGGGAATTTAAGTAGTA------CAAGCCGTAAGCGATCGATCATGCACGATTTA- 192
                      **   ***      **** *       **  **     ***    *  * * ** **** 

consensus_3118#0      NAGCTTTTCTAGCAAAAAACGCCCCCAAAAAACTTTTTTGGGGTTTTCAATTTACCCCCC 300
consensus_3118#1      AAGTTTGTAAGATATGTAAATCCTCT------CTTTCTTTGGTTCTGCG---TGCCACAC 243
                       ** ** *     *   **  ** *       **** ** ** * * *    * ** * *

consensus_3118#0      TTTTATACTTTTGGGGAAAATTTTTTTTTCCCCCCCACATTTTTTTCGCGGGGGGGGCCC 360
consensus_3118#1      ACACACACCTCTA---TATATTGTCCTTTTGAACATGTTCTTGATCTGCTCAGGTTTCGT 300
                          * ** * *     * *** *  ***    *      **  *  **   **   *  

consensus_3118#0      CACCACTTTTTACCCCCCAAAAAAGGCGGACGTCTTCCTGAGATTTTTTCNTTTTCTACA 420
consensus_3118#1      GATTAGTGGTTAATAGT-AAAAAAAATAAAAACCATGATCACACTCCTCCTACTGCGCTA 359
                       *  * *  ***      ******     *   * *  * * * *  * *   * *   *

consensus_3118#0      CAAAANACACAACCGCCCGCGCGCGGNGACGTGCCACACACACGCGCTTCTCTCTTTTCT 480
consensus_3118#1      TACTGGG-ACGGATATCCGGTGAAACCAAACAGACACATACACACACGGTAGAACAGAAC 418
                       *      **      ***         *   * **** **** * *             

consensus_3118#0      GCGGGGGGGGGGCTGCACGCGCGCGGGGGGCGAGGCCACACATNTTTTTTGC-GTACTAA 539
consensus_3118#1      ATATTAATTACACTGTTTAATAATAATAATCAA--CCGCAAGCCTGTCCCGCTGTATCGA 476
                                  ***               * *  ** **    * *   ** ***   *

consensus_3118#0      NCAAACCGTTAACCGGCTACACCACACCATGCACACAAAAACCGGTCACACCCACAACCA 599
consensus_3118#1      TC--------AACCAGTTTCCCCTCTTCCTGGCCCCCAGGTCCTTTTGGTTCCTCTTCC- 527
                       *        **** * * * ** *  * **  * * *   **  *     ** *  ** 

consensus_3118#0      GTGNCGCAACAAAAAACAACGCCTCTTTTTTTTTNACTACAAAACAAGACAAAAAAACAC 659
consensus_3118#1      -TGGTCCCCCAGG-----TCCTCTTCCCAGGCATGAGGAGAAGAGTATGTGGAATACGGC 581
                       **   *  **        *  **         * *  * ** *  *     ** *   *

consensus_3118#0      GCACAAACAAACCAAAA-- 676
consensus_3118#1      TTTAAGTTAAGTTGCAAGA 600
                          *   **     **